data_A1A61 # _chem_comp.id A1A61 _chem_comp.name "[(3S)-2-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-8-oxa-2-azaspiro[4.5]decan-3-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-16 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.345 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A61 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HD3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A61 N2 N1 N 0 1 Y N N N N N 14.941 -0.251 4.208 -1.467 -1.160 -1.026 N2 A1A61 1 A1A61 C3 C1 C 0 1 N N N N N N 14.085 -0.353 -0.089 2.195 -1.039 0.551 C3 A1A61 2 A1A61 C6 C2 C 0 1 N N N N N N 12.526 1.044 -2.372 4.498 0.919 0.497 C6 A1A61 3 A1A61 C9 C3 C 0 1 N N N N N N 14.716 1.710 0.951 0.644 0.814 0.751 C9 A1A61 4 A1A61 C12 C4 C 0 1 Y N N N N N 15.406 2.105 5.397 -3.395 0.673 -0.513 C12 A1A61 5 A1A61 C14 C5 C 0 1 Y N N N N N 15.649 3.505 3.590 -2.407 1.657 1.309 C14 A1A61 6 A1A61 C1 C6 C 0 1 N N N N N N 15.471 -1.918 1.564 0.482 -2.825 1.072 C1 A1A61 7 A1A61 C10 C7 C 0 1 Y N N N N N 15.132 0.819 3.357 -1.267 -0.348 0.008 C10 A1A61 8 A1A61 C11 C8 C 0 1 Y N N N N N 14.993 -0.102 5.586 -2.560 -1.069 -1.763 C11 A1A61 9 A1A61 C13 C9 C 0 1 Y N N N N N 15.381 2.112 3.964 -2.248 0.612 0.299 C13 A1A61 10 A1A61 C15 C10 C 0 1 Y N N N N N 15.804 4.236 4.774 -3.582 2.259 1.063 C15 A1A61 11 A1A61 C2 C11 C 0 1 N N S N N N 14.448 -0.677 1.406 0.751 -1.538 0.289 C2 A1A61 12 A1A61 C4 C12 C 0 1 N N N N N N 13.637 1.131 -0.065 2.059 0.472 0.260 C4 A1A61 13 A1A61 C5 C13 C 0 1 N N N N N N 13.620 1.708 -1.493 3.106 1.256 1.040 C5 A1A61 14 A1A61 C7 C14 C 0 1 N N N N N N 11.146 1.675 -0.537 3.621 0.419 -1.681 C7 A1A61 15 A1A61 C8 C15 C 0 1 N N N N N N 12.235 1.448 0.524 2.189 0.734 -1.235 C8 A1A61 16 A1A61 N1 N2 N 0 1 N N N N N N 15.059 0.601 1.958 -0.122 -0.448 0.777 N1 A1A61 17 A1A61 N3 N3 N 0 1 Y N N N N N 15.214 1.038 6.213 -3.504 -0.184 -1.527 N3 A1A61 18 A1A61 N4 N4 N 0 1 Y N N N N N 15.655 3.368 5.793 -4.183 1.679 -0.024 N4 A1A61 19 A1A61 O1 O1 O 0 1 N N N N N N 15.203 -2.646 2.764 -0.809 -3.331 0.728 O1 A1A61 20 A1A61 O2 O2 O 0 1 N N N N N N 11.316 0.826 -1.656 4.538 1.194 -0.905 O2 A1A61 21 A1A61 H5 H1 H 0 1 N N N N N N 13.268 -1.000 -0.440 2.486 -1.212 1.587 H5 A1A61 22 A1A61 H6 H2 H 0 1 N N N N N N 14.962 -0.484 -0.740 2.900 -1.507 -0.135 H6 A1A61 23 A1A61 H9 H3 H 0 1 N N N N N N 12.902 0.076 -2.734 5.245 1.526 1.008 H9 A1A61 24 A1A61 H10 H4 H 0 1 N N N N N N 12.316 1.699 -3.230 4.709 -0.137 0.667 H10 A1A61 25 A1A61 H16 H5 H 0 1 N N N N N N 15.621 2.011 0.403 0.692 1.240 1.753 H16 A1A61 26 A1A61 H15 H6 H 0 1 N N N N N N 14.302 2.581 1.480 0.172 1.521 0.069 H15 A1A61 27 A1A61 H18 H7 H 0 1 N N N N N N 15.715 3.895 2.585 -1.713 1.898 2.101 H18 A1A61 28 A1A61 H4 H8 H 0 1 N N N N N N 15.358 -2.591 0.701 1.241 -3.567 0.823 H4 A1A61 29 A1A61 H3 H9 H 0 1 N N N N N N 16.501 -1.534 1.597 0.517 -2.614 2.141 H3 A1A61 30 A1A61 H17 H10 H 0 1 N N N N N N 14.841 -0.984 6.190 -2.682 -1.748 -2.594 H17 A1A61 31 A1A61 H19 H11 H 0 1 N N N N N N 16.005 5.294 4.855 -3.992 3.078 1.636 H19 A1A61 32 A1A61 H1 H12 H 0 1 N N N N N N 13.525 -0.914 1.956 0.594 -1.704 -0.776 H1 A1A61 33 A1A61 H8 H13 H 0 1 N N N N N N 14.602 1.537 -1.958 3.051 0.987 2.095 H8 A1A61 34 A1A61 H7 H14 H 0 1 N N N N N N 13.424 2.789 -1.438 2.920 2.324 0.927 H7 A1A61 35 A1A61 H11 H15 H 0 1 N N N N N N 11.190 2.721 -0.874 3.824 -0.641 -1.532 H11 A1A61 36 A1A61 H12 H16 H 0 1 N N N N N N 10.163 1.476 -0.086 3.737 0.667 -2.736 H12 A1A61 37 A1A61 H14 H17 H 0 1 N N N N N N 12.315 2.358 1.137 1.491 0.098 -1.779 H14 A1A61 38 A1A61 H13 H18 H 0 1 N N N N N N 11.928 0.604 1.159 1.965 1.781 -1.442 H13 A1A61 39 A1A61 H20 H19 H 0 1 N N N N N N 15.723 3.636 6.754 -5.040 1.944 -0.393 H20 A1A61 40 A1A61 H2 H20 H 0 1 N N N N N N 15.814 -3.370 2.839 -1.047 -4.148 1.188 H2 A1A61 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A61 C6 O2 SING N N 1 A1A61 C6 C5 SING N N 2 A1A61 O2 C7 SING N N 3 A1A61 C5 C4 SING N N 4 A1A61 C7 C8 SING N N 5 A1A61 C3 C4 SING N N 6 A1A61 C3 C2 SING N N 7 A1A61 C4 C8 SING N N 8 A1A61 C4 C9 SING N N 9 A1A61 C9 N1 SING N N 10 A1A61 C2 C1 SING N N 11 A1A61 C2 N1 SING N N 12 A1A61 C1 O1 SING N N 13 A1A61 N1 C10 SING N N 14 A1A61 C10 C13 DOUB Y N 15 A1A61 C10 N2 SING Y N 16 A1A61 C14 C13 SING Y N 17 A1A61 C14 C15 DOUB Y N 18 A1A61 C13 C12 SING Y N 19 A1A61 N2 C11 DOUB Y N 20 A1A61 C15 N4 SING Y N 21 A1A61 C12 N4 SING Y N 22 A1A61 C12 N3 DOUB Y N 23 A1A61 C11 N3 SING Y N 24 A1A61 C3 H5 SING N N 25 A1A61 C3 H6 SING N N 26 A1A61 C6 H9 SING N N 27 A1A61 C6 H10 SING N N 28 A1A61 C9 H16 SING N N 29 A1A61 C9 H15 SING N N 30 A1A61 C14 H18 SING N N 31 A1A61 C1 H4 SING N N 32 A1A61 C1 H3 SING N N 33 A1A61 C11 H17 SING N N 34 A1A61 C15 H19 SING N N 35 A1A61 C2 H1 SING N N 36 A1A61 C5 H8 SING N N 37 A1A61 C5 H7 SING N N 38 A1A61 C7 H11 SING N N 39 A1A61 C7 H12 SING N N 40 A1A61 C8 H14 SING N N 41 A1A61 C8 H13 SING N N 42 A1A61 N4 H20 SING N N 43 A1A61 O1 H2 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A61 SMILES ACDLabs 14.52 "OCC1CC2(CN1c1ncnc3[NH]ccc31)CCOCC2" A1A61 InChI InChI 1.06 "InChI=1S/C15H20N4O2/c20-8-11-7-15(2-5-21-6-3-15)9-19(11)14-12-1-4-16-13(12)17-10-18-14/h1,4,10-11,20H,2-3,5-9H2,(H,16,17,18)/t11-/m0/s1" A1A61 InChIKey InChI 1.06 SUOQSJFVCUYJSL-NSHDSACASA-N A1A61 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1CC2(CCOCC2)CN1c3ncnc4[nH]ccc34" A1A61 SMILES CACTVS 3.385 "OC[CH]1CC2(CCOCC2)CN1c3ncnc4[nH]ccc34" A1A61 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC4(CCOCC4)C[C@H]3CO" A1A61 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC4(CCOCC4)CC3CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A61 "SYSTEMATIC NAME" ACDLabs 14.52 "[(3S)-2-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-8-oxa-2-azaspiro[4.5]decan-3-yl]methanol" A1A61 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(3~{S})-2-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-8-oxa-2-azaspiro[4.5]decan-3-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A61 "Create component" 2024-09-16 RCSB A1A61 "Initial release" 2025-06-11 RCSB #