data_A1A62 # _chem_comp.id A1A62 _chem_comp.name "[(3S)-2-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-2-azaspiro[4.4]nonan-3-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-16 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 272.346 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A62 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HD4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A62 N2 N1 N 0 1 Y N N N N N 14.803 -0.207 4.173 -1.663 -1.394 -0.742 N2 A1A62 1 A1A62 C3 C1 C 0 1 N N N N N N 13.739 -0.381 0.042 2.332 -1.422 -0.568 C3 A1A62 2 A1A62 C6 C2 C 0 1 N N N N N N 12.249 1.501 -2.257 4.051 1.623 0.775 C6 A1A62 3 A1A62 C9 C3 C 0 1 N N N N N N 14.572 1.702 0.948 1.049 0.626 -0.361 C9 A1A62 4 A1A62 C12 C4 C 0 1 Y N N N N N 15.363 2.131 5.347 -3.187 0.779 -0.196 C12 A1A62 5 A1A62 C14 C5 C 0 1 Y N N N N N 15.505 3.553 3.549 -1.577 2.024 0.865 C14 A1A62 6 A1A62 C1 C6 C 0 1 N N N N N N 15.278 -1.927 1.688 0.816 -2.781 0.910 C1 A1A62 7 A1A62 C10 C7 C 0 1 Y N N N N N 14.923 0.890 3.349 -1.073 -0.390 -0.100 C10 A1A62 8 A1A62 C11 C8 C 0 1 Y N N N N N 14.938 -0.091 5.529 -2.934 -1.325 -1.094 C11 A1A62 9 A1A62 C13 C9 C 0 1 Y N N N N N 15.242 2.160 3.934 -1.836 0.749 0.197 C13 A1A62 10 A1A62 C15 C10 C 0 1 Y N N N N N 15.742 4.262 4.728 -2.727 2.717 0.838 C15 A1A62 11 A1A62 C2 C11 C 0 1 N N S N N N 14.193 -0.670 1.520 0.865 -1.733 -0.204 C2 A1A62 12 A1A62 C4 C12 C 0 1 N N N N N N 13.526 1.165 -0.093 2.485 0.083 -0.325 C4 A1A62 13 A1A62 C5 C13 C 0 1 N N N N N N 13.654 1.627 -1.588 3.169 0.380 1.010 C5 A1A62 14 A1A62 C7 C14 C 0 1 N N N N N N 11.230 1.391 -1.099 3.840 2.040 -0.696 C7 A1A62 15 A1A62 C8 C15 C 0 1 N N N N N N 12.068 1.667 0.172 3.360 0.743 -1.400 C8 A1A62 16 A1A62 N1 N2 N 0 1 N N N N N N 14.765 0.674 2.003 0.258 -0.468 0.267 N1 A1A62 17 A1A62 N3 N3 N 0 1 Y N N N N N 15.224 1.044 6.136 -3.687 -0.277 -0.836 N3 A1A62 18 A1A62 N4 N4 N 0 1 Y N N N N N 15.655 3.386 5.763 -3.698 1.982 0.207 N4 A1A62 19 A1A62 O1 O1 O 0 1 N N N N N N 15.046 -2.721 2.894 -0.543 -3.147 1.159 O1 A1A62 20 A1A62 H5 H1 H 0 1 N N N N N N 12.798 -0.910 -0.172 3.010 -1.982 0.076 H5 A1A62 21 A1A62 H6 H2 H 0 1 N N N N N N 14.516 -0.716 -0.661 2.522 -1.660 -1.615 H6 A1A62 22 A1A62 H10 H3 H 0 1 N N N N N N 12.037 2.390 -2.869 3.743 2.430 1.440 H10 A1A62 23 A1A62 H9 H4 H 0 1 N N N N N N 12.207 0.602 -2.889 5.098 1.375 0.947 H9 A1A62 24 A1A62 H16 H5 H 0 1 N N N N N N 15.529 1.898 0.443 0.969 1.543 0.223 H16 A1A62 25 A1A62 H15 H6 H 0 1 N N N N N N 14.199 2.632 1.401 0.724 0.795 -1.388 H15 A1A62 26 A1A62 H18 H7 H 0 1 N N N N N N 15.513 3.952 2.546 -0.641 2.346 1.296 H18 A1A62 27 A1A62 H4 H8 H 0 1 N N N N N N 15.190 -2.586 0.812 1.379 -3.663 0.604 H4 A1A62 28 A1A62 H3 H9 H 0 1 N N N N N N 16.295 -1.510 1.733 1.253 -2.367 1.818 H3 A1A62 29 A1A62 H17 H10 H 0 1 N N N N N N 14.803 -0.975 6.134 -3.374 -2.162 -1.615 H17 A1A62 30 A1A62 H19 H11 H 0 1 N N N N N N 15.956 5.318 4.804 -2.867 3.704 1.253 H19 A1A62 31 A1A62 H1 H12 H 0 1 N N N N N N 13.304 -0.918 2.118 0.334 -2.099 -1.082 H1 A1A62 32 A1A62 H7 H13 H 0 1 N N N N N N 14.377 0.987 -2.115 3.787 -0.466 1.311 H7 A1A62 33 A1A62 H8 H14 H 0 1 N N N N N N 13.993 2.673 -1.627 2.422 0.590 1.775 H8 A1A62 34 A1A62 H11 H15 H 0 1 N N N N N N 10.431 2.139 -1.210 3.078 2.816 -0.767 H11 A1A62 35 A1A62 H12 H16 H 0 1 N N N N N N 10.787 0.385 -1.063 4.778 2.385 -1.133 H12 A1A62 36 A1A62 H14 H17 H 0 1 N N N N N N 12.078 2.746 0.386 4.206 0.106 -1.655 H14 A1A62 37 A1A62 H13 H18 H 0 1 N N N N N N 11.637 1.127 1.028 2.771 0.979 -2.286 H13 A1A62 38 A1A62 H20 H19 H 0 1 N N N N N N 15.791 3.639 6.721 -4.612 2.273 0.066 H20 A1A62 39 A1A62 H2 H20 H 0 1 N N N N N N 15.688 -3.420 2.942 -0.651 -3.810 1.855 H2 A1A62 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A62 C6 C5 SING N N 1 A1A62 C6 C7 SING N N 2 A1A62 C5 C4 SING N N 3 A1A62 C7 C8 SING N N 4 A1A62 C4 C3 SING N N 5 A1A62 C4 C8 SING N N 6 A1A62 C4 C9 SING N N 7 A1A62 C3 C2 SING N N 8 A1A62 C9 N1 SING N N 9 A1A62 C2 C1 SING N N 10 A1A62 C2 N1 SING N N 11 A1A62 C1 O1 SING N N 12 A1A62 N1 C10 SING N N 13 A1A62 C10 C13 DOUB Y N 14 A1A62 C10 N2 SING Y N 15 A1A62 C14 C13 SING Y N 16 A1A62 C14 C15 DOUB Y N 17 A1A62 C13 C12 SING Y N 18 A1A62 N2 C11 DOUB Y N 19 A1A62 C15 N4 SING Y N 20 A1A62 C12 N4 SING Y N 21 A1A62 C12 N3 DOUB Y N 22 A1A62 C11 N3 SING Y N 23 A1A62 C3 H5 SING N N 24 A1A62 C3 H6 SING N N 25 A1A62 C6 H10 SING N N 26 A1A62 C6 H9 SING N N 27 A1A62 C9 H16 SING N N 28 A1A62 C9 H15 SING N N 29 A1A62 C14 H18 SING N N 30 A1A62 C1 H4 SING N N 31 A1A62 C1 H3 SING N N 32 A1A62 C11 H17 SING N N 33 A1A62 C15 H19 SING N N 34 A1A62 C2 H1 SING N N 35 A1A62 C5 H7 SING N N 36 A1A62 C5 H8 SING N N 37 A1A62 C7 H11 SING N N 38 A1A62 C7 H12 SING N N 39 A1A62 C8 H14 SING N N 40 A1A62 C8 H13 SING N N 41 A1A62 N4 H20 SING N N 42 A1A62 O1 H2 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A62 SMILES ACDLabs 14.52 "OCC1CC2(CCCC2)CN1c1ncnc2[NH]ccc21" A1A62 InChI InChI 1.06 "InChI=1S/C15H20N4O/c20-8-11-7-15(4-1-2-5-15)9-19(11)14-12-3-6-16-13(12)17-10-18-14/h3,6,10-11,20H,1-2,4-5,7-9H2,(H,16,17,18)/t11-/m0/s1" A1A62 InChIKey InChI 1.06 GRQCHKLBIAKMOS-NSHDSACASA-N A1A62 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1CC2(CCCC2)CN1c3ncnc4[nH]ccc34" A1A62 SMILES CACTVS 3.385 "OC[CH]1CC2(CCCC2)CN1c3ncnc4[nH]ccc34" A1A62 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC4(CCCC4)C[C@H]3CO" A1A62 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC4(CCCC4)CC3CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A62 "SYSTEMATIC NAME" ACDLabs 14.52 "[(3S)-2-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-2-azaspiro[4.4]nonan-3-yl]methanol" A1A62 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(3~{S})-2-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-2-azaspiro[4.4]nonan-3-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A62 "Create component" 2024-09-16 RCSB A1A62 "Initial release" 2025-06-11 RCSB #