data_A1A6A # _chem_comp.id A1A6A _chem_comp.name "(2S)-phenyl{(3S)-3-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy]pyrrolidin-1-yl}acetic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H31 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-11 _chem_comp.pdbx_modified_date 2024-11-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 409.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A6A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9CZ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A6A C15 C1 C 0 1 Y N N N N N 13.880 -46.918 -23.889 5.407 1.198 0.367 C15 A1A6A 1 A1A6A C17 C2 C 0 1 Y N N N N N 15.006 -45.764 -25.548 6.850 -0.589 0.101 C17 A1A6A 2 A1A6A C18 C3 C 0 1 Y N N N N N 14.363 -46.502 -26.542 7.767 0.206 -0.572 C18 A1A6A 3 A1A6A C19 C4 C 0 1 N N N N N N 14.658 -46.235 -28.054 9.065 -0.349 -1.093 C19 A1A6A 4 A1A6A C21 C5 C 0 1 N N N N N N 16.480 -44.742 -27.211 8.206 -2.585 -0.410 C21 A1A6A 5 A1A6A C20 C6 C 0 1 N N N N N N 15.416 -44.930 -28.257 9.420 -1.647 -0.367 C20 A1A6A 6 A1A6A C13 C7 C 0 1 N N N N N N 12.074 -47.109 -22.085 2.946 0.898 0.326 C13 A1A6A 7 A1A6A C14 C8 C 0 1 N N N N N N 13.601 -47.148 -22.377 4.099 1.731 0.890 C14 A1A6A 8 A1A6A C12 C9 C 0 1 N N N N N N 11.693 -46.106 -20.973 1.618 1.440 0.858 C12 A1A6A 9 A1A6A C11 C10 C 0 1 N N N N N N 10.140 -45.979 -20.827 0.465 0.606 0.294 C11 A1A6A 10 A1A6A C23 C11 C 0 1 Y N N N N N 13.437 -47.487 -26.197 7.480 1.547 -0.768 C23 A1A6A 11 A1A6A C02 C12 C 0 1 N N N N N N 5.578 -44.498 -15.760 -4.764 -1.697 0.484 C02 A1A6A 12 A1A6A C04 C13 C 0 1 N N S N N N 5.846 -45.126 -17.101 -5.311 -0.341 0.851 C04 A1A6A 13 A1A6A C06 C14 C 0 1 N N N N N N 7.627 -43.606 -17.743 -3.965 0.624 -0.926 C06 A1A6A 14 A1A6A C07 C15 C 0 1 N N N N N N 8.737 -43.633 -18.527 -2.475 1.045 -0.977 C07 A1A6A 15 A1A6A C08 C16 C 0 1 N N R N N N 8.616 -44.876 -19.397 -1.923 0.401 0.321 C08 A1A6A 16 A1A6A C09 C17 C 0 1 N N N N N N 7.598 -45.802 -18.616 -3.100 0.544 1.309 C09 A1A6A 17 A1A6A C24 C18 C 0 1 Y N N N N N 13.200 -47.689 -24.836 6.277 2.047 -0.288 C24 A1A6A 18 A1A6A C25 C19 C 0 1 Y N N N N N 5.338 -46.601 -17.093 -6.589 -0.094 0.091 C25 A1A6A 19 A1A6A C26 C20 C 0 1 Y N N N N N 5.881 -47.545 -16.220 -7.755 0.195 0.775 C26 A1A6A 20 A1A6A C27 C21 C 0 1 Y N N N N N 5.408 -48.861 -16.233 -8.927 0.422 0.078 C27 A1A6A 21 A1A6A C28 C22 C 0 1 Y N N N N N 4.392 -49.227 -17.112 -8.933 0.360 -1.303 C28 A1A6A 22 A1A6A C29 C23 C 0 1 Y N N N N N 3.843 -48.285 -17.979 -7.767 0.072 -1.987 C29 A1A6A 23 A1A6A C30 C24 C 0 1 Y N N N N N 4.318 -46.969 -17.968 -6.594 -0.149 -1.290 C30 A1A6A 24 A1A6A N05 N1 N 0 1 N N N N N N 7.285 -45.046 -17.408 -4.328 0.694 0.506 N05 A1A6A 25 A1A6A N16 N2 N 0 1 Y N N N N N 14.746 -45.993 -24.257 5.710 -0.073 0.544 N16 A1A6A 26 A1A6A N22 N3 N 0 1 N N N N N N 15.982 -44.714 -25.872 7.111 -1.939 0.326 N22 A1A6A 27 A1A6A O01 O1 O 0 1 N N N N N N 6.510 -44.402 -14.903 -5.495 -2.799 0.710 O01 A1A6A 28 A1A6A O03 O2 O 0 1 N N N N N N 4.429 -44.068 -15.491 -3.667 -1.791 -0.013 O03 A1A6A 29 A1A6A O10 O3 O 0 1 N N N N N N 9.846 -45.475 -19.511 -0.776 1.112 0.790 O10 A1A6A 30 A1A6A H192 H1 H 0 0 N N N N N N 13.704 -46.182 -28.600 8.970 -0.548 -2.161 H192 A1A6A 31 A1A6A H191 H2 H 0 0 N N N N N N 15.262 -47.064 -28.451 9.859 0.380 -0.931 H191 A1A6A 32 A1A6A H211 H3 H 0 0 N N N N N N 17.198 -45.571 -27.295 7.906 -2.753 -1.444 H211 A1A6A 33 A1A6A H212 H4 H 0 0 N N N N N N 16.994 -43.790 -27.408 8.458 -3.536 0.060 H212 A1A6A 34 A1A6A H201 H5 H 0 0 N N N N N N 15.889 -44.942 -29.250 10.267 -2.123 -0.862 H201 A1A6A 35 A1A6A H202 H6 H 0 0 N N N N N N 14.706 -44.092 -28.199 9.676 -1.428 0.670 H202 A1A6A 36 A1A6A H131 H7 H 0 0 N N N N N N 11.751 -48.114 -21.775 2.954 0.957 -0.762 H131 A1A6A 37 A1A6A H132 H8 H 0 0 N N N N N N 11.549 -46.824 -23.008 3.064 -0.141 0.635 H132 A1A6A 38 A1A6A H142 H9 H 0 0 N N N N N N 14.100 -46.360 -21.794 4.092 1.672 1.978 H142 A1A6A 39 A1A6A H141 H10 H 0 0 N N N N N N 14.000 -48.130 -22.082 3.981 2.770 0.582 H141 A1A6A 40 A1A6A H122 H11 H 0 0 N N N N N N 12.111 -45.119 -21.222 1.610 1.380 1.946 H122 A1A6A 41 A1A6A H121 H12 H 0 0 N N N N N N 12.115 -46.453 -20.018 1.500 2.478 0.549 H121 A1A6A 42 A1A6A H111 H13 H 0 0 N N N N N N 9.673 -46.966 -20.960 0.472 0.665 -0.794 H111 A1A6A 43 A1A6A H112 H14 H 0 0 N N N N N N 9.751 -45.284 -21.586 0.583 -0.433 0.602 H112 A1A6A 44 A1A6A H231 H15 H 0 0 N N N N N N 12.926 -48.068 -26.950 8.176 2.190 -1.286 H231 A1A6A 45 A1A6A H041 H16 H 0 0 N N N N N N 5.282 -44.575 -17.868 -5.513 -0.309 1.921 H041 A1A6A 46 A1A6A H061 H17 H 0 0 N N N N N N 6.793 -43.136 -18.285 -4.575 1.317 -1.505 H061 A1A6A 47 A1A6A H062 H18 H 0 0 N N N N N N 7.830 -43.042 -16.821 -4.088 -0.392 -1.299 H062 A1A6A 48 A1A6A H072 H19 H 0 0 N N N N N N 8.781 -42.731 -19.155 -1.983 0.631 -1.858 H072 A1A6A 49 A1A6A H071 H20 H 0 0 N N N N N N 9.642 -43.691 -17.904 -2.374 2.130 -0.949 H071 A1A6A 50 A1A6A H081 H21 H 0 0 N N N N N N 8.188 -44.611 -20.375 -1.683 -0.650 0.159 H081 A1A6A 51 A1A6A H092 H22 H 0 0 N N N N N N 6.691 -45.976 -19.214 -3.171 -0.346 1.933 H092 A1A6A 52 A1A6A H091 H23 H 0 0 N N N N N N 8.062 -46.767 -18.364 -2.954 1.425 1.934 H091 A1A6A 53 A1A6A H241 H24 H 0 0 N N N N N N 12.493 -48.440 -24.516 6.025 3.088 -0.426 H241 A1A6A 54 A1A6A H261 H25 H 0 0 N N N N N N 6.666 -47.259 -15.535 -7.750 0.243 1.854 H261 A1A6A 55 A1A6A H271 H26 H 0 0 N N N N N N 5.831 -49.593 -15.561 -9.838 0.647 0.612 H271 A1A6A 56 A1A6A H281 H27 H 0 0 N N N N N N 4.029 -50.244 -17.122 -9.849 0.537 -1.847 H281 A1A6A 57 A1A6A H291 H28 H 0 0 N N N N N N 3.053 -48.570 -18.658 -7.772 0.023 -3.066 H291 A1A6A 58 A1A6A H301 H29 H 0 0 N N N N N N 3.893 -46.237 -18.639 -5.681 -0.370 -1.825 H301 A1A6A 59 A1A6A H221 H31 H 0 0 N N N N N N 16.759 -44.811 -25.250 6.578 -2.445 0.960 H221 A1A6A 60 A1A6A H1 H32 H 0 1 N N N N N N 6.177 -43.985 -14.117 -5.101 -3.646 0.458 H1 A1A6A 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A6A C02 O01 SING N N 1 A1A6A O03 C02 DOUB N N 2 A1A6A C04 C02 SING N N 3 A1A6A C06 N05 SING N N 4 A1A6A C07 C06 SING N N 5 A1A6A C08 C07 SING N N 6 A1A6A C09 C08 SING N N 7 A1A6A O10 C08 SING N N 8 A1A6A C11 O10 SING N N 9 A1A6A C12 C11 SING N N 10 A1A6A C13 C12 SING N N 11 A1A6A C14 C13 SING N N 12 A1A6A C15 C14 SING N N 13 A1A6A N16 C15 DOUB Y N 14 A1A6A C17 N16 SING Y N 15 A1A6A C18 C17 DOUB Y N 16 A1A6A C20 C19 SING N N 17 A1A6A C21 C20 SING N N 18 A1A6A N22 C21 SING N N 19 A1A6A C19 C18 SING N N 20 A1A6A C23 C18 SING Y N 21 A1A6A C24 C23 DOUB Y N 22 A1A6A N05 C04 SING N N 23 A1A6A C25 C04 SING N N 24 A1A6A C26 C25 DOUB Y N 25 A1A6A C27 C26 SING Y N 26 A1A6A C28 C27 DOUB Y N 27 A1A6A C29 C28 SING Y N 28 A1A6A C30 C29 DOUB Y N 29 A1A6A N05 C09 SING N N 30 A1A6A C15 C24 SING Y N 31 A1A6A C17 N22 SING N N 32 A1A6A C25 C30 SING Y N 33 A1A6A C19 H192 SING N N 34 A1A6A C19 H191 SING N N 35 A1A6A C21 H211 SING N N 36 A1A6A C21 H212 SING N N 37 A1A6A C20 H201 SING N N 38 A1A6A C20 H202 SING N N 39 A1A6A C13 H131 SING N N 40 A1A6A C13 H132 SING N N 41 A1A6A C14 H142 SING N N 42 A1A6A C14 H141 SING N N 43 A1A6A C12 H122 SING N N 44 A1A6A C12 H121 SING N N 45 A1A6A C11 H111 SING N N 46 A1A6A C11 H112 SING N N 47 A1A6A C23 H231 SING N N 48 A1A6A C04 H041 SING N N 49 A1A6A C06 H061 SING N N 50 A1A6A C06 H062 SING N N 51 A1A6A C07 H072 SING N N 52 A1A6A C07 H071 SING N N 53 A1A6A C08 H081 SING N N 54 A1A6A C09 H092 SING N N 55 A1A6A C09 H091 SING N N 56 A1A6A C24 H241 SING N N 57 A1A6A C26 H261 SING N N 58 A1A6A C27 H271 SING N N 59 A1A6A C28 H281 SING N N 60 A1A6A C29 H291 SING N N 61 A1A6A C30 H301 SING N N 62 A1A6A N22 H221 SING N N 63 A1A6A O01 H1 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A6A SMILES ACDLabs 14.52 "OC(=O)C(c1ccccc1)N1CCC(OCCCCc2ccc3CCCNc3n2)C1" A1A6A InChI InChI 1.06 "InChI=1S/C24H31N3O3/c28-24(29)22(18-7-2-1-3-8-18)27-15-13-21(17-27)30-16-5-4-10-20-12-11-19-9-6-14-25-23(19)26-20/h1-3,7-8,11-12,21-22H,4-6,9-10,13-17H2,(H,25,26)(H,28,29)/t21?,22-/m0/s1" A1A6A InChIKey InChI 1.06 QINAXTDOZGVHAX-KEKNWZKVSA-N A1A6A SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@H](N1CC[C@H](C1)OCCCCc2ccc3CCCNc3n2)c4ccccc4" A1A6A SMILES CACTVS 3.385 "OC(=O)[CH](N1CC[CH](C1)OCCCCc2ccc3CCCNc3n2)c4ccccc4" A1A6A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@@H](C(=O)O)N2CC[C@H](C2)OCCCCc3ccc4c(n3)NCCC4" A1A6A SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(C(=O)O)N2CCC(C2)OCCCCc3ccc4c(n3)NCCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A6A "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-phenyl{(3S)-3-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy]pyrrolidin-1-yl}acetic acid" A1A6A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-phenyl-2-[(3~{R})-3-[4-(5,6,7,8-tetrahydro-1,8-naphthyridin-2-yl)butoxy]pyrrolidin-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A6A "Create component" 2024-09-11 RCSB A1A6A "Initial release" 2024-11-13 RCSB #