data_A1A6X # _chem_comp.id A1A6X _chem_comp.name "[(8R)-7-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1,4-dioxa-7-azaspiro[4.4]nonan-8-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-16 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A6X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HCZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A6X N2 N1 N 0 1 Y N N N N N 14.989 -0.398 4.610 -1.468 -1.350 0.763 N2 A1A6X 1 A1A6X C3 C1 C 0 1 N N N N N N 14.950 -0.404 0.140 2.424 -1.020 -0.414 C3 A1A6X 2 A1A6X C6 C2 C 0 1 Y N N N N N 15.054 0.680 3.792 -1.099 -0.327 -0.002 C6 A1A6X 3 A1A6X C9 C3 C 0 1 Y N N N N N 15.190 1.994 4.372 -2.024 0.704 -0.226 C9 A1A6X 4 A1A6X C12 C4 C 0 1 N N N N N N 11.734 0.903 -0.396 4.488 1.398 -0.138 C12 A1A6X 5 A1A6X C1 C5 C 0 1 N N N N N N 14.383 -2.026 2.060 0.616 -2.661 -1.093 C1 A1A6X 6 A1A6X C10 C6 C 0 1 Y N N N N N 15.313 3.384 4.016 -2.015 1.959 -0.976 C10 A1A6X 7 A1A6X C11 C7 C 0 1 Y N N N N N 15.426 4.143 5.150 -3.222 2.523 -0.803 C11 A1A6X 8 A1A6X C13 C8 C 0 1 N N N N N N 12.550 2.010 -1.044 4.325 0.626 1.190 C13 A1A6X 9 A1A6X C2 C9 C 0 1 N N R N N N 15.296 -0.781 1.614 0.960 -1.477 -0.186 C2 A1A6X 10 A1A6X C4 C10 C 0 1 N N N N N N 13.968 0.765 0.264 2.393 0.452 0.030 C4 A1A6X 11 A1A6X C5 C11 C 0 1 N N N N N N 14.521 1.507 1.489 0.926 0.886 -0.058 C5 A1A6X 12 A1A6X C7 C12 C 0 1 Y N N N N N 15.050 -0.213 5.970 -2.673 -1.399 1.300 C7 A1A6X 13 A1A6X C8 C13 C 0 1 Y N N N N N 15.242 2.017 5.770 -3.297 0.610 0.368 C8 A1A6X 14 A1A6X N1 N2 N 0 1 N N N N N N 14.982 0.464 2.403 0.165 -0.280 -0.563 N1 A1A6X 15 A1A6X N3 N3 N 0 1 Y N N N N N 15.171 0.935 6.617 -3.572 -0.456 1.117 N3 A1A6X 16 A1A6X N4 N4 N 0 1 Y N N N N N 15.386 3.311 6.302 -3.997 1.725 -0.001 N4 A1A6X 17 A1A6X O1 O1 O 0 1 N N N N N N 14.945 -2.718 3.158 -0.696 -3.135 -0.781 O1 A1A6X 18 A1A6X O2 O2 O 0 1 N N N N N N 12.648 0.364 0.546 3.222 1.255 -0.812 O2 A1A6X 19 A1A6X O3 O3 O 0 1 N N N N N N 13.875 1.551 -0.889 2.886 0.585 1.370 O3 A1A6X 20 A1A6X H5 H1 H 0 1 N N N N N N 14.481 -1.253 -0.379 3.110 -1.596 0.208 H5 A1A6X 21 A1A6X H6 H2 H 0 1 N N N N N N 15.854 -0.096 -0.405 2.694 -1.101 -1.467 H6 A1A6X 22 A1A6X H14 H3 H 0 1 N N N N N N 10.840 1.307 0.102 4.695 2.450 0.059 H14 A1A6X 23 A1A6X H13 H4 H 0 1 N N N N N N 11.431 0.147 -1.135 5.287 0.961 -0.736 H13 A1A6X 24 A1A6X H4 H5 H 0 1 N N N N N N 13.387 -1.655 2.344 0.649 -2.341 -2.134 H4 A1A6X 25 A1A6X H3 H6 H 0 1 N N N N N N 14.287 -2.720 1.212 1.339 -3.461 -0.935 H3 A1A6X 26 A1A6X H10 H7 H 0 1 N N N N N N 15.316 3.769 3.007 -1.196 2.356 -1.557 H10 A1A6X 27 A1A6X H11 H8 H 0 1 N N N N N N 15.530 5.218 5.167 -3.534 3.464 -1.230 H11 A1A6X 28 A1A6X H16 H9 H 0 1 N N N N N N 12.399 2.969 -0.526 4.731 -0.382 1.102 H16 A1A6X 29 A1A6X H15 H10 H 0 1 N N N N N N 12.291 2.123 -2.107 4.800 1.164 2.010 H15 A1A6X 30 A1A6X H1 H11 H 0 1 N N N N N N 16.359 -1.049 1.702 0.796 -1.736 0.861 H1 A1A6X 31 A1A6X H7 H12 H 0 1 N N N N N N 15.357 2.160 1.198 0.562 1.171 0.929 H7 A1A6X 32 A1A6X H8 H13 H 0 1 N N N N N N 13.732 2.111 1.961 0.826 1.724 -0.748 H8 A1A6X 33 A1A6X H9 H14 H 0 1 N N N N N N 14.993 -1.103 6.579 -2.932 -2.249 1.915 H9 A1A6X 34 A1A6X H12 H15 H 0 1 N N N N N N 15.446 3.582 7.263 -4.908 1.923 0.266 H12 A1A6X 35 A1A6X H2 H16 H 0 1 N N N N N N 14.382 -3.446 3.396 -0.980 -3.886 -1.319 H2 A1A6X 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A6X C13 O3 SING N N 1 A1A6X C13 C12 SING N N 2 A1A6X O3 C4 SING N N 3 A1A6X C12 O2 SING N N 4 A1A6X C3 C4 SING N N 5 A1A6X C3 C2 SING N N 6 A1A6X C4 O2 SING N N 7 A1A6X C4 C5 SING N N 8 A1A6X C5 N1 SING N N 9 A1A6X C2 C1 SING N N 10 A1A6X C2 N1 SING N N 11 A1A6X C1 O1 SING N N 12 A1A6X N1 C6 SING N N 13 A1A6X C6 C9 DOUB Y N 14 A1A6X C6 N2 SING Y N 15 A1A6X C10 C9 SING Y N 16 A1A6X C10 C11 DOUB Y N 17 A1A6X C9 C8 SING Y N 18 A1A6X N2 C7 DOUB Y N 19 A1A6X C11 N4 SING Y N 20 A1A6X C8 N4 SING Y N 21 A1A6X C8 N3 DOUB Y N 22 A1A6X C7 N3 SING Y N 23 A1A6X C3 H5 SING N N 24 A1A6X C3 H6 SING N N 25 A1A6X C12 H14 SING N N 26 A1A6X C12 H13 SING N N 27 A1A6X C1 H4 SING N N 28 A1A6X C1 H3 SING N N 29 A1A6X C10 H10 SING N N 30 A1A6X C11 H11 SING N N 31 A1A6X C13 H16 SING N N 32 A1A6X C13 H15 SING N N 33 A1A6X C2 H1 SING N N 34 A1A6X C5 H7 SING N N 35 A1A6X C5 H8 SING N N 36 A1A6X C7 H9 SING N N 37 A1A6X N4 H12 SING N N 38 A1A6X O1 H2 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A6X SMILES ACDLabs 14.52 "OCC1CC2(CN1c1ncnc3[NH]ccc31)OCCO2" A1A6X InChI InChI 1.06 "InChI=1S/C13H16N4O3/c18-6-9-5-13(19-3-4-20-13)7-17(9)12-10-1-2-14-11(10)15-8-16-12/h1-2,8-9,18H,3-7H2,(H,14,15,16)/t9-/m1/s1" A1A6X InChIKey InChI 1.06 KCPPNACDFMGYSX-SECBINFHSA-N A1A6X SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1CC2(CN1c3ncnc4[nH]ccc34)OCCO2" A1A6X SMILES CACTVS 3.385 "OC[CH]1CC2(CN1c3ncnc4[nH]ccc34)OCCO2" A1A6X SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC4(C[C@@H]3CO)OCCO4" A1A6X SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC4(CC3CO)OCCO4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A6X "SYSTEMATIC NAME" ACDLabs 14.52 "[(8R)-7-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)-1,4-dioxa-7-azaspiro[4.4]nonan-8-yl]methanol" A1A6X "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(8~{R})-7-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-1,4-dioxa-7-azaspiro[4.4]nonan-8-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A6X "Create component" 2024-09-16 RCSB A1A6X "Initial release" 2025-06-11 RCSB #