data_A1A77 # _chem_comp.id A1A77 _chem_comp.name "[(2R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-yl]methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-18 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 247.296 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A77 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HDF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A77 O1 O1 O 0 1 N N N N N N 10.826 1.332 3.316 -3.067 2.052 -0.363 O1 A1A77 1 A1A77 C1 C1 C 0 1 N N N N N N 13.582 -2.106 -0.737 -3.491 -0.595 -1.132 C1 A1A77 2 A1A77 C2 C2 C 0 1 N N N N N N 14.538 -0.052 0.207 -2.011 -2.182 -0.058 C2 A1A77 3 A1A77 C3 C3 C 0 1 N N N N N N 14.570 0.961 1.366 -0.765 -1.378 -0.435 C3 A1A77 4 A1A77 C4 C4 C 0 1 Y N N N N N 14.343 0.750 3.840 0.684 0.301 0.351 C4 A1A77 5 A1A77 C5 C5 C 0 1 Y N N N N N 14.696 0.007 6.014 1.791 2.300 0.039 C5 A1A77 6 A1A77 C6 C6 C 0 1 Y N N N N N 15.308 2.106 5.574 3.050 0.382 -0.133 C6 A1A77 7 A1A77 C7 C7 C 0 1 Y N N N N N 14.886 2.011 4.217 1.894 -0.374 0.134 C7 A1A77 8 A1A77 C8 C8 C 0 1 Y N N N N N 15.156 3.281 3.591 2.309 -1.776 0.111 C8 A1A77 9 A1A77 C10 C9 C 0 1 N N R N N N 12.532 -0.098 2.388 -1.613 0.518 0.809 C10 A1A77 10 A1A77 C11 C10 C 0 1 N N N N N N 11.471 0.986 2.109 -1.871 1.281 -0.492 C11 A1A77 11 A1A77 C12 C11 C 0 1 N N N N N N 12.549 -1.209 1.308 -2.859 -0.287 1.185 C12 A1A77 12 A1A77 C9 C12 C 0 1 Y N N N N N 15.714 4.091 4.549 3.625 -1.786 -0.156 C9 A1A77 13 A1A77 N1 N1 N 0 1 N N N N N N 13.864 0.483 2.545 -0.479 -0.398 0.623 N1 A1A77 14 A1A77 N2 N2 N 0 1 Y N N N N N 14.260 -0.230 4.773 0.683 1.629 0.294 N2 A1A77 15 A1A77 N3 N3 N 0 1 Y N N N N N 15.232 1.123 6.514 2.948 1.710 -0.170 N3 A1A77 16 A1A77 N4 N4 N 0 1 Y N N N N N 15.803 3.383 5.737 4.080 -0.502 -0.305 N4 A1A77 17 A1A77 N5 N5 N 0 1 N N N N N N 13.799 -1.314 0.495 -3.145 -1.266 0.128 N5 A1A77 18 A1A77 H15 H1 H 0 1 N N N N N N 10.172 2.000 3.146 -3.234 2.646 -1.107 H15 A1A77 19 A1A77 H2 H2 H 0 1 N N N N N N 13.036 -3.028 -0.489 -4.320 -1.118 -1.607 H2 A1A77 20 A1A77 H3 H3 H 0 1 N N N N N N 12.995 -1.514 -1.455 -3.781 0.436 -0.927 H3 A1A77 21 A1A77 H4 H4 H 0 1 N N N N N N 14.554 -2.364 -1.183 -2.627 -0.603 -1.797 H4 A1A77 22 A1A77 H5 H5 H 0 1 N N N N N N 15.576 -0.314 -0.046 -2.241 -2.890 -0.855 H5 A1A77 23 A1A77 H6 H6 H 0 1 N N N N N N 14.061 0.433 -0.657 -1.826 -2.725 0.869 H6 A1A77 24 A1A77 H7 H7 H 0 1 N N N N N N 15.619 1.154 1.637 0.085 -2.052 -0.545 H7 A1A77 25 A1A77 H8 H8 H 0 1 N N N N N N 14.100 1.897 1.029 -0.939 -0.856 -1.376 H8 A1A77 26 A1A77 H9 H9 H 0 1 N N N N N N 14.602 -0.816 6.707 1.747 3.379 0.001 H9 A1A77 27 A1A77 H10 H10 H 0 1 N N N N N N 14.957 3.545 2.563 1.679 -2.637 0.276 H10 A1A77 28 A1A77 H1 H11 H 0 1 N N N N N N 12.258 -0.579 3.338 -1.382 1.225 1.605 H1 A1A77 29 A1A77 H14 H12 H 0 1 N N N N N N 11.959 1.876 1.685 -1.982 0.572 -1.313 H14 A1A77 30 A1A77 H13 H13 H 0 1 N N N N N N 10.730 0.599 1.395 -1.031 1.945 -0.697 H13 A1A77 31 A1A77 H17 H14 H 0 1 N N N N N N 11.714 -1.020 0.618 -2.684 -0.808 2.126 H17 A1A77 32 A1A77 H16 H15 H 0 1 N N N N N N 12.395 -2.173 1.815 -3.708 0.388 1.296 H16 A1A77 33 A1A77 H11 H16 H 0 1 N N N N N N 16.032 5.113 4.401 4.235 -2.674 -0.241 H11 A1A77 34 A1A77 H12 H17 H 0 1 N N N N N N 16.174 3.747 6.592 4.997 -0.255 -0.502 H12 A1A77 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A77 C1 N5 SING N N 1 A1A77 C2 N5 SING N N 2 A1A77 C2 C3 SING N N 3 A1A77 N5 C12 SING N N 4 A1A77 C12 C10 SING N N 5 A1A77 C3 N1 SING N N 6 A1A77 C11 C10 SING N N 7 A1A77 C11 O1 SING N N 8 A1A77 C10 N1 SING N N 9 A1A77 N1 C4 SING N N 10 A1A77 C8 C7 SING Y N 11 A1A77 C8 C9 DOUB Y N 12 A1A77 C4 C7 DOUB Y N 13 A1A77 C4 N2 SING Y N 14 A1A77 C7 C6 SING Y N 15 A1A77 C9 N4 SING Y N 16 A1A77 N2 C5 DOUB Y N 17 A1A77 C6 N4 SING Y N 18 A1A77 C6 N3 DOUB Y N 19 A1A77 C5 N3 SING Y N 20 A1A77 O1 H15 SING N N 21 A1A77 C1 H2 SING N N 22 A1A77 C1 H3 SING N N 23 A1A77 C1 H4 SING N N 24 A1A77 C2 H5 SING N N 25 A1A77 C2 H6 SING N N 26 A1A77 C3 H7 SING N N 27 A1A77 C3 H8 SING N N 28 A1A77 C5 H9 SING N N 29 A1A77 C8 H10 SING N N 30 A1A77 C10 H1 SING N N 31 A1A77 C11 H14 SING N N 32 A1A77 C11 H13 SING N N 33 A1A77 C12 H17 SING N N 34 A1A77 C12 H16 SING N N 35 A1A77 C9 H11 SING N N 36 A1A77 N4 H12 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A77 SMILES ACDLabs 14.52 "CN1CC(CO)N(CC1)c1ncnc2[NH]ccc12" A1A77 InChI InChI 1.06 "InChI=1S/C12H17N5O/c1-16-4-5-17(9(6-16)7-18)12-10-2-3-13-11(10)14-8-15-12/h2-3,8-9,18H,4-7H2,1H3,(H,13,14,15)/t9-/m1/s1" A1A77 InChIKey InChI 1.06 AHSJKXMQYAVIME-SECBINFHSA-N A1A77 SMILES_CANONICAL CACTVS 3.385 "CN1CCN([C@@H](CO)C1)c2ncnc3[nH]ccc23" A1A77 SMILES CACTVS 3.385 "CN1CCN([CH](CO)C1)c2ncnc3[nH]ccc23" A1A77 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CN1CCN([C@H](C1)CO)c2c3cc[nH]c3ncn2" A1A77 SMILES "OpenEye OEToolkits" 3.1.0.0 "CN1CCN(C(C1)CO)c2c3cc[nH]c3ncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A77 "SYSTEMATIC NAME" ACDLabs 14.52 "[(2R)-4-methyl-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-yl]methanol" A1A77 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[(2~{R})-4-methyl-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)piperazin-2-yl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A77 "Create component" 2024-09-18 RCSB A1A77 "Initial release" 2025-06-11 RCSB #