data_A1A7T # _chem_comp.id A1A7T _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[3-(thiophen-2-ylcarbonylamino)pyridin-1-yl]oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N7 O14 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2024-09-17 _chem_comp.pdbx_modified_date 2024-11-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 746.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A7T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9DMU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A7T C13 C1 C 0 1 N N R N N N 180.224 131.496 123.525 5.364 0.885 -1.944 C13 A1A7T 1 A1A7T C24 C2 C 0 1 N N N N N N 177.453 135.532 119.922 -1.839 -3.407 0.909 C24 A1A7T 2 A1A7T C02 C3 C 0 1 Y N N N N N 186.484 131.225 126.896 10.494 1.748 2.920 C02 A1A7T 3 A1A7T C04 C4 C 0 1 Y N N N N N 185.514 129.041 126.550 9.884 3.829 2.129 C04 A1A7T 4 A1A7T C06 C5 C 0 1 Y N N N N N 184.097 130.800 126.198 8.776 2.018 1.250 C06 A1A7T 5 A1A7T C07 C6 C 0 1 Y N N N N N 185.149 131.723 126.528 9.543 1.167 2.063 C07 A1A7T 6 A1A7T C09 C7 C 0 1 Y N N N N N 183.315 132.924 126.039 8.207 -0.084 0.900 C09 A1A7T 7 A1A7T C11 C8 C 0 1 N N R N N N 181.569 131.113 125.482 6.951 1.630 -0.461 C11 A1A7T 8 A1A7T C14 C9 C 0 1 N N N N N N 180.462 132.714 122.425 4.688 -0.365 -2.509 C14 A1A7T 9 A1A7T C25 C10 C 0 1 N N R N N N 178.343 135.340 118.593 -2.847 -2.504 1.623 C25 A1A7T 10 A1A7T C27 C11 C 0 1 N N R N N N 179.709 136.715 117.151 -4.744 -1.244 1.332 C27 A1A7T 11 A1A7T C29 C12 C 0 1 Y N N N N N 181.584 138.612 117.060 -5.801 -1.424 -0.817 C29 A1A7T 12 A1A7T C30 C13 C 0 1 Y N N N N N 182.153 139.864 117.470 -6.723 -1.042 -1.773 C30 A1A7T 13 A1A7T C31 C14 C 0 1 Y N N N N N 181.495 140.651 118.438 -7.590 0.003 -1.498 C31 A1A7T 14 A1A7T C32 C15 C 0 1 Y N N N N N 180.242 140.238 119.049 -7.496 0.632 -0.259 C32 A1A7T 15 A1A7T C34 C16 C 0 1 N N N N N N 178.065 141.087 120.374 -9.606 1.718 -0.420 C34 A1A7T 16 A1A7T C36 C17 C 0 1 Y N N N N N 177.436 142.005 121.497 -10.462 2.883 -0.177 C36 A1A7T 17 A1A7T C37 C18 C 0 1 Y N N N N N 178.051 142.929 122.299 -11.749 3.027 -0.614 C37 A1A7T 18 A1A7T C38 C19 C 0 1 Y N N N N N 177.161 143.636 123.273 -12.318 4.221 -0.243 C38 A1A7T 19 A1A7T C39 C20 C 0 1 Y N N N N N 175.852 143.271 123.240 -11.528 5.029 0.474 C39 A1A7T 20 A1A7T C41 C21 C 0 1 Y N N N N N 179.738 138.971 118.585 -6.543 0.191 0.649 C41 A1A7T 21 A1A7T C42 C22 C 0 1 N N R N N N 180.547 135.475 117.696 -5.241 -2.505 2.073 C42 A1A7T 22 A1A7T C44 C23 C 0 1 N N S N N N 179.766 134.968 118.980 -3.965 -3.353 2.269 C44 A1A7T 23 A1A7T C46 C24 C 0 1 N N S N N N 179.479 131.942 124.868 6.547 1.311 -2.842 C46 A1A7T 24 A1A7T C48 C25 C 0 1 N N R N N N 180.570 132.192 125.968 7.615 1.812 -1.844 C48 A1A7T 25 A1A7T N01 N1 N 0 1 N N N N N N 187.595 132.038 127.239 11.279 0.961 3.744 N01 A1A7T 26 A1A7T N03 N2 N 0 1 Y N N N N N 186.610 129.841 126.889 10.625 3.070 2.916 N03 A1A7T 27 A1A7T N05 N3 N 0 1 Y N N N N N 184.266 129.427 126.204 8.982 3.329 1.311 N05 A1A7T 28 A1A7T N08 N4 N 0 1 Y N N N N N 184.607 133.037 126.413 9.146 -0.101 1.801 N08 A1A7T 29 A1A7T N10 N5 N 0 1 Y N N N N N 182.946 131.567 125.894 7.943 1.201 0.528 N10 A1A7T 30 A1A7T N28 N6 N 1 1 Y N N N N N 180.402 138.195 117.619 -5.737 -0.807 0.347 N28 A1A7T 31 A1A7T N33 N7 N 0 1 N N N N N N 179.537 141.050 120.067 -8.349 1.692 0.065 N33 A1A7T 32 A1A7T O12 O1 O 0 1 N N N N N N 181.453 130.958 124.065 5.960 0.598 -0.660 O12 A1A7T 33 A1A7T O15 O2 O 0 1 N N N N N N 179.892 133.891 122.801 3.530 -0.674 -1.732 O15 A1A7T 34 A1A7T O17 O3 O 0 1 N N N N N N 182.190 135.193 122.312 3.382 -3.171 -2.071 O17 A1A7T 35 A1A7T O18 O4 O 0 1 N N N N N N 180.814 135.808 124.385 1.862 -1.722 -3.473 O18 A1A7T 36 A1A7T O19 O5 O 0 1 N N N N N N 180.078 136.658 121.953 1.450 -2.048 -0.897 O19 A1A7T 37 A1A7T O21 O6 O 0 1 N N N N N N 177.704 136.097 122.959 -0.006 -4.003 -1.552 O21 A1A7T 38 A1A7T O22 O7 O 0 1 N N N N N N 178.239 138.503 122.326 1.322 -4.217 0.584 O22 A1A7T 39 A1A7T O23 O8 O 0 1 N N N N N N 177.580 136.767 120.431 -0.755 -2.615 0.418 O23 A1A7T 40 A1A7T O26 O9 O 0 1 N N N N N N 178.505 136.629 117.781 -3.530 -1.660 0.670 O26 A1A7T 41 A1A7T O35 O10 O 0 1 N N N N N N 177.357 140.358 119.705 -10.031 0.774 -1.060 O35 A1A7T 42 A1A7T O43 O11 O 0 1 N N N N N N 180.470 134.454 116.762 -5.807 -2.152 3.338 O43 A1A7T 43 A1A7T O45 O12 O 0 1 N N N N N N 179.823 133.606 119.251 -3.703 -3.550 3.660 O45 A1A7T 44 A1A7T O47 O13 O 0 1 N N N N N N 178.667 130.921 125.340 6.152 2.364 -3.724 O47 A1A7T 45 A1A7T O49 O14 O 0 1 N N N N N N 180.195 131.938 127.290 7.912 3.189 -2.079 O49 A1A7T 46 A1A7T P16 P1 P 0 1 N N N N N N 180.874 135.454 122.944 2.574 -1.931 -2.044 P16 A1A7T 47 A1A7T P20 P2 P 0 1 N N N N N N 178.459 137.051 122.096 0.492 -3.238 -0.387 P20 A1A7T 48 A1A7T S40 S1 S 0 1 Y N N N N N 175.687 142.015 121.974 -10.000 4.315 0.731 S40 A1A7T 49 A1A7T H1 H1 H 0 1 N N N N N N 179.632 130.707 123.038 4.643 1.698 -1.855 H1 A1A7T 50 A1A7T H2 H2 H 0 1 N N N N N N 176.396 135.357 119.672 -1.458 -4.151 1.608 H2 A1A7T 51 A1A7T H3 H3 H 0 1 N N N N N N 177.777 134.800 120.677 -2.328 -3.909 0.074 H3 A1A7T 52 A1A7T H4 H4 H 0 1 N N N N N N 185.688 127.975 126.567 10.024 4.899 2.158 H4 A1A7T 53 A1A7T H5 H5 H 0 1 N N N N N N 182.651 133.759 125.873 7.711 -0.958 0.505 H5 A1A7T 54 A1A7T H6 H6 H 0 1 N N N N N N 181.335 130.165 125.988 6.476 2.558 -0.143 H6 A1A7T 55 A1A7T H7 H7 H 0 1 N N N N N N 181.544 132.871 122.305 4.394 -0.184 -3.543 H7 A1A7T 56 A1A7T H8 H8 H 0 1 N N N N N N 180.028 132.406 121.462 5.385 -1.203 -2.471 H8 A1A7T 57 A1A7T H9 H9 H 0 1 N N N N N N 177.897 134.551 117.970 -2.346 -1.899 2.378 H9 A1A7T 58 A1A7T H10 H10 H 0 1 N N N N N N 179.644 136.680 116.053 -4.535 -0.444 2.042 H10 A1A7T 59 A1A7T H11 H11 H 0 1 N N N N N N 182.081 138.004 116.319 -5.126 -2.241 -1.024 H11 A1A7T 60 A1A7T H12 H12 H 0 1 N N N N N N 183.083 140.203 117.038 -6.767 -1.553 -2.724 H12 A1A7T 61 A1A7T H13 H13 H 0 1 N N N N N N 181.936 141.591 118.735 -8.321 0.322 -2.227 H13 A1A7T 62 A1A7T H14 H14 H 0 1 N N N N N N 179.109 143.134 122.233 -12.266 2.277 -1.195 H14 A1A7T 63 A1A7T H15 H15 H 0 1 N N N N N N 177.534 144.385 123.956 -13.330 4.489 -0.511 H15 A1A7T 64 A1A7T H16 H16 H 0 1 N N N N N N 175.060 143.664 123.860 -11.820 6.001 0.843 H16 A1A7T 65 A1A7T H17 H17 H 0 1 N N N N N N 178.811 138.601 118.997 -6.461 0.672 1.613 H17 A1A7T 66 A1A7T H18 H18 H 0 1 N N N N N N 181.573 135.776 117.952 -5.968 -3.044 1.466 H18 A1A7T 67 A1A7T H19 H19 H 0 1 N N N N N N 180.082 135.567 119.847 -4.060 -4.311 1.759 H19 A1A7T 68 A1A7T H20 H20 H 0 1 N N N N N N 178.920 132.871 124.683 6.922 0.458 -3.407 H20 A1A7T 69 A1A7T H21 H21 H 0 1 N N N N N N 181.005 133.194 125.841 8.519 1.207 -1.916 H21 A1A7T 70 A1A7T H22 H22 H 0 1 N N N N N N 188.382 131.457 127.446 11.176 -0.004 3.735 H22 A1A7T 71 A1A7T H23 H23 H 0 1 N N N N N N 187.817 132.639 126.472 11.932 1.373 4.331 H23 A1A7T 72 A1A7T H24 H24 H 0 1 N N N N N N 180.113 141.651 120.621 -8.036 2.408 0.638 H24 A1A7T 73 A1A7T H25 H25 H 0 1 N N N N N N 181.693 135.823 124.745 1.315 -0.927 -3.527 H25 A1A7T 74 A1A7T H26 H26 H 0 1 N N N N N N 177.613 138.621 123.031 1.680 -3.782 1.370 H26 A1A7T 75 A1A7T H27 H27 H 0 1 N N N N N N 180.965 133.704 117.070 -6.135 -2.906 3.846 H27 A1A7T 76 A1A7T H28 H28 H 0 1 N N N N N N 180.710 133.368 119.493 -4.373 -4.077 4.116 H28 A1A7T 77 A1A7T H29 H29 H 0 1 N N N N N N 178.233 131.203 126.137 6.857 2.670 -4.311 H29 A1A7T 78 A1A7T H30 H30 H 0 1 N N N N N N 179.583 132.604 127.580 8.331 3.361 -2.934 H30 A1A7T 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A7T C13 C14 SING N N 1 A1A7T C13 C46 SING N N 2 A1A7T C13 O12 SING N N 3 A1A7T C24 C25 SING N N 4 A1A7T C24 O23 SING N N 5 A1A7T C02 C07 DOUB Y N 6 A1A7T C02 N01 SING N N 7 A1A7T C02 N03 SING Y N 8 A1A7T C04 N03 DOUB Y N 9 A1A7T C04 N05 SING Y N 10 A1A7T C06 C07 SING Y N 11 A1A7T C06 N05 DOUB Y N 12 A1A7T C06 N10 SING Y N 13 A1A7T C07 N08 SING Y N 14 A1A7T C09 N08 DOUB Y N 15 A1A7T C09 N10 SING Y N 16 A1A7T C11 C48 SING N N 17 A1A7T C11 N10 SING N N 18 A1A7T C11 O12 SING N N 19 A1A7T C14 O15 SING N N 20 A1A7T C25 C44 SING N N 21 A1A7T C25 O26 SING N N 22 A1A7T C27 C42 SING N N 23 A1A7T C27 O26 SING N N 24 A1A7T C29 C30 DOUB Y N 25 A1A7T C29 N28 SING Y N 26 A1A7T C30 C31 SING Y N 27 A1A7T C31 C32 DOUB Y N 28 A1A7T C32 C41 SING Y N 29 A1A7T C32 N33 SING N N 30 A1A7T C34 C36 SING N N 31 A1A7T C34 N33 SING N N 32 A1A7T C34 O35 DOUB N N 33 A1A7T C36 C37 DOUB Y N 34 A1A7T C36 S40 SING Y N 35 A1A7T C37 C38 SING Y N 36 A1A7T C38 C39 DOUB Y N 37 A1A7T C39 S40 SING Y N 38 A1A7T C41 N28 DOUB Y N 39 A1A7T C42 C44 SING N N 40 A1A7T C42 O43 SING N N 41 A1A7T C44 O45 SING N N 42 A1A7T C46 C48 SING N N 43 A1A7T C46 O47 SING N N 44 A1A7T C48 O49 SING N N 45 A1A7T O15 P16 SING N N 46 A1A7T O17 P16 DOUB N N 47 A1A7T O18 P16 SING N N 48 A1A7T O19 P16 SING N N 49 A1A7T O19 P20 SING N N 50 A1A7T O21 P20 DOUB N N 51 A1A7T O22 P20 SING N N 52 A1A7T O23 P20 SING N N 53 A1A7T C27 N28 SING N N 54 A1A7T C13 H1 SING N N 55 A1A7T C24 H2 SING N N 56 A1A7T C24 H3 SING N N 57 A1A7T C04 H4 SING N N 58 A1A7T C09 H5 SING N N 59 A1A7T C11 H6 SING N N 60 A1A7T C14 H7 SING N N 61 A1A7T C14 H8 SING N N 62 A1A7T C25 H9 SING N N 63 A1A7T C27 H10 SING N N 64 A1A7T C29 H11 SING N N 65 A1A7T C30 H12 SING N N 66 A1A7T C31 H13 SING N N 67 A1A7T C37 H14 SING N N 68 A1A7T C38 H15 SING N N 69 A1A7T C39 H16 SING N N 70 A1A7T C41 H17 SING N N 71 A1A7T C42 H18 SING N N 72 A1A7T C44 H19 SING N N 73 A1A7T C46 H20 SING N N 74 A1A7T C48 H21 SING N N 75 A1A7T N01 H22 SING N N 76 A1A7T N01 H23 SING N N 77 A1A7T N33 H24 SING N N 78 A1A7T O18 H25 SING N N 79 A1A7T O22 H26 SING N N 80 A1A7T O43 H27 SING N N 81 A1A7T O45 H28 SING N N 82 A1A7T O47 H29 SING N N 83 A1A7T O49 H30 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A7T SMILES ACDLabs 14.52 "O=C(Nc1ccc[n+](c1)C1OC(COP(=O)(O)OP(=O)(O)OCC2OC(n3cnc4c(N)ncnc43)C(O)C2O)C(O)C1O)c1cccs1" A1A7T InChI InChI 1.06 "InChI=1S/C25H29N7O14P2S/c26-21-16-22(28-10-27-21)32(11-29-16)25-20(36)18(34)14(45-25)9-43-48(40,41)46-47(38,39)42-8-13-17(33)19(35)24(44-13)31-5-1-3-12(7-31)30-23(37)15-4-2-6-49-15/h1-7,10-11,13-14,17-20,24-25,33-36H,8-9H2,(H4-,26,27,28,30,37,38,39,40,41)/p+1/t13-,14-,17-,18-,19-,20-,24-,25-/m1/s1" A1A7T InChIKey InChI 1.06 DPLWQOAIFYMWQG-DLOVRGRYSA-O A1A7T SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)[n+]5cccc(NC(=O)c6sccc6)c5)[C@@H](O)[C@H]3O" A1A7T SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)[n+]5cccc(NC(=O)c6sccc6)c5)[CH](O)[CH]3O" A1A7T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)NC(=O)c6cccs6" A1A7T SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)NC(=O)c6cccs6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A7T "SYSTEMATIC NAME" ACDLabs 14.52 "1-[(2R,3R,4S,5R)-5-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-3,4-dihydroxyoxolan-2-yl]-3-[(thiophene-2-carbonyl)amino]pyridin-1-ium (non-preferred name)" A1A7T "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-[3-(thiophen-2-ylcarbonylamino)pyridin-1-ium-1-yl]oxolan-2-yl]methyl hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A7T "Create component" 2024-09-17 RCSB A1A7T "Initial release" 2024-11-27 RCSB #