data_A1A86 # _chem_comp.id A1A86 _chem_comp.name "(2S)-4,4-dimethyl-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pentan-1-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-22 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.324 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A86 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HDX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A86 N2 N1 N 0 1 Y N N N N N 15.003 -0.163 3.864 -0.938 -1.168 -1.204 N2 A1A86 1 A1A86 C3 C1 C 0 1 N N N N N N 12.034 -0.847 1.741 4.276 1.805 -0.110 C3 A1A86 2 A1A86 C6 C2 C 0 1 N N S N N N 14.951 -0.421 0.879 1.604 -0.963 -0.047 C6 A1A86 3 A1A86 C9 C3 C 0 1 Y N N N N N 14.975 -0.068 5.247 -2.113 -1.305 -1.793 C9 A1A86 4 A1A86 C12 C4 C 0 1 Y N N N N N 15.816 3.594 3.480 -2.173 1.234 1.438 C12 A1A86 5 A1A86 C1 C5 C 0 1 N N N N N N 12.218 1.564 1.102 1.796 2.019 0.110 C1 A1A86 6 A1A86 C10 C6 C 0 1 Y N N N N N 15.446 2.140 5.208 -3.148 0.129 -0.320 C10 A1A86 7 A1A86 C11 C7 C 0 1 Y N N N N N 15.504 2.196 3.766 -1.917 0.306 0.339 C11 A1A86 8 A1A86 C13 C8 C 0 1 Y N N N N N 15.918 4.274 4.687 -3.477 1.550 1.384 C13 A1A86 9 A1A86 C2 C9 C 0 1 N N N N N N 12.299 0.108 0.565 2.934 1.125 -0.387 C2 A1A86 10 A1A86 C4 C10 C 0 1 N N N N N N 11.230 -0.053 -0.538 2.780 0.894 -1.892 C4 A1A86 11 A1A86 C5 C11 C 0 1 N N N N N N 13.699 -0.217 -0.072 2.883 -0.219 0.343 C5 A1A86 12 A1A86 C7 C12 C 0 1 N N N N N N 16.204 -0.837 0.024 1.633 -2.373 0.546 C7 A1A86 13 A1A86 C8 C13 C 0 1 Y N N N N N 15.262 0.944 3.086 -0.791 -0.380 -0.143 C8 A1A86 14 A1A86 N1 N2 N 0 1 N N N N N N 15.283 0.800 1.676 0.440 -0.239 0.471 N1 A1A86 15 A1A86 N3 N3 N 0 1 Y N N N N N 15.181 1.036 5.974 -3.194 -0.683 -1.376 N3 A1A86 16 A1A86 N4 N4 N 0 1 Y N N N N N 15.697 3.373 5.676 -4.071 0.895 0.336 N4 A1A86 17 A1A86 O1 O1 O 0 1 N N N N N N 17.181 -1.463 0.818 1.837 -2.291 1.958 O1 A1A86 18 A1A86 H7 H1 H 0 1 N N N N N N 12.810 -0.709 2.508 4.385 1.970 0.962 H7 A1A86 19 A1A86 H6 H2 H 0 1 N N N N N N 11.047 -0.629 2.175 5.086 1.168 -0.465 H6 A1A86 20 A1A86 H5 H3 H 0 1 N N N N N N 12.055 -1.886 1.381 4.312 2.763 -0.630 H5 A1A86 21 A1A86 H1 H4 H 0 1 N N N N N N 14.720 -1.247 1.568 1.538 -1.027 -1.133 H1 A1A86 22 A1A86 H17 H5 H 0 1 N N N N N N 14.766 -0.977 5.792 -2.188 -1.954 -2.652 H17 A1A86 23 A1A86 H18 H6 H 0 1 N N N N N N 15.945 4.025 2.498 -1.452 1.596 2.156 H18 A1A86 24 A1A86 H2 H7 H 0 1 N N N N N N 12.971 1.707 1.891 1.918 3.023 -0.297 H2 A1A86 25 A1A86 H4 H8 H 0 1 N N N N N N 12.411 2.269 0.280 0.841 1.608 -0.217 H4 A1A86 26 A1A86 H3 H9 H 0 1 N N N N N N 11.215 1.747 1.515 1.818 2.063 1.199 H3 A1A86 27 A1A86 H19 H10 H 0 1 N N N N N N 16.133 5.325 4.814 -3.982 2.219 2.065 H19 A1A86 28 A1A86 H9 H11 H 0 1 N N N N N N 10.236 0.169 -0.121 2.816 1.851 -2.412 H9 A1A86 29 A1A86 H8 H12 H 0 1 N N N N N N 11.446 0.643 -1.362 3.590 0.257 -2.246 H8 A1A86 30 A1A86 H10 H13 H 0 1 N N N N N N 11.247 -1.086 -0.917 1.824 0.409 -2.089 H10 A1A86 31 A1A86 H12 H14 H 0 1 N N N N N N 13.581 -1.144 -0.652 2.890 -0.048 1.419 H12 A1A86 32 A1A86 H11 H15 H 0 1 N N N N N N 13.943 0.612 -0.752 3.750 -0.817 0.064 H11 A1A86 33 A1A86 H13 H16 H 0 1 N N N N N N 16.639 0.063 -0.435 0.685 -2.872 0.344 H13 A1A86 34 A1A86 H14 H17 H 0 1 N N N N N N 15.884 -1.533 -0.765 2.446 -2.941 0.094 H14 A1A86 35 A1A86 H16 H18 H 0 1 N N N N N N 16.219 1.032 1.410 0.534 0.339 1.244 H16 A1A86 36 A1A86 H20 H19 H 0 1 N N N N N N 15.719 3.602 6.649 -5.008 0.965 0.096 H20 A1A86 37 A1A86 H15 H20 H 0 1 N N N N N N 17.924 -1.703 0.277 1.866 -3.150 2.401 H15 A1A86 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A86 C4 C2 SING N N 1 A1A86 C5 C2 SING N N 2 A1A86 C5 C6 SING N N 3 A1A86 C7 O1 SING N N 4 A1A86 C7 C6 SING N N 5 A1A86 C2 C1 SING N N 6 A1A86 C2 C3 SING N N 7 A1A86 C6 N1 SING N N 8 A1A86 N1 C8 SING N N 9 A1A86 C8 C11 DOUB Y N 10 A1A86 C8 N2 SING Y N 11 A1A86 C12 C11 SING Y N 12 A1A86 C12 C13 DOUB Y N 13 A1A86 C11 C10 SING Y N 14 A1A86 N2 C9 DOUB Y N 15 A1A86 C13 N4 SING Y N 16 A1A86 C10 N4 SING Y N 17 A1A86 C10 N3 DOUB Y N 18 A1A86 C9 N3 SING Y N 19 A1A86 C3 H7 SING N N 20 A1A86 C3 H6 SING N N 21 A1A86 C3 H5 SING N N 22 A1A86 C6 H1 SING N N 23 A1A86 C9 H17 SING N N 24 A1A86 C12 H18 SING N N 25 A1A86 C1 H2 SING N N 26 A1A86 C1 H4 SING N N 27 A1A86 C1 H3 SING N N 28 A1A86 C13 H19 SING N N 29 A1A86 C4 H9 SING N N 30 A1A86 C4 H8 SING N N 31 A1A86 C4 H10 SING N N 32 A1A86 C5 H12 SING N N 33 A1A86 C5 H11 SING N N 34 A1A86 C7 H13 SING N N 35 A1A86 C7 H14 SING N N 36 A1A86 N1 H16 SING N N 37 A1A86 N4 H20 SING N N 38 A1A86 O1 H15 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A86 SMILES ACDLabs 14.52 "CC(C)(C)CC(CO)Nc1ncnc2[NH]ccc21" A1A86 InChI InChI 1.06 "InChI=1S/C13H20N4O/c1-13(2,3)6-9(7-18)17-12-10-4-5-14-11(10)15-8-16-12/h4-5,8-9,18H,6-7H2,1-3H3,(H2,14,15,16,17)/t9-/m0/s1" A1A86 InChIKey InChI 1.06 VNBBVLLBKKRQPG-VIFPVBQESA-N A1A86 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)C[C@@H](CO)Nc1ncnc2[nH]ccc12" A1A86 SMILES CACTVS 3.385 "CC(C)(C)C[CH](CO)Nc1ncnc2[nH]ccc12" A1A86 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C)C[C@@H](CO)Nc1c2cc[nH]c2ncn1" A1A86 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC(C)(C)CC(CO)Nc1c2cc[nH]c2ncn1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A86 "SYSTEMATIC NAME" ACDLabs 14.52 "(2S)-4,4-dimethyl-2-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]pentan-1-ol" A1A86 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(2~{S})-4,4-dimethyl-2-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)pentan-1-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A86 "Create component" 2024-09-22 RCSB A1A86 "Initial release" 2025-06-11 RCSB #