data_A1A8J # _chem_comp.id A1A8J _chem_comp.name "2-[(2R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-2-yl]-2,3-dihydro-1H-inden-2-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-20 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 320.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A8J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HDL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A8J N2 N1 N 0 1 Y N N N N N 14.934 0.191 4.319 -1.484 0.394 -1.503 N2 A1A8J 1 A1A8J C3 C1 C 0 1 N N N N N N 15.199 0.455 -0.009 0.089 -2.874 -0.708 C3 A1A8J 2 A1A8J C6 C2 C 0 1 Y N N N N N 15.029 1.376 3.622 -1.786 -0.043 -0.285 C6 A1A8J 3 A1A8J C9 C3 C 0 1 Y N N N N N 15.278 2.574 4.378 -2.940 0.459 0.336 C9 A1A8J 4 A1A8J C12 C4 C 0 1 N N N N N N 13.246 -1.672 0.348 1.499 0.510 0.590 C12 A1A8J 5 A1A8J C14 C5 C 0 1 Y N N N N N 12.355 -1.426 -1.936 3.612 2.048 0.895 C14 A1A8J 6 A1A8J C17 C6 C 0 1 Y N N N N N 10.990 0.905 -1.020 4.955 0.189 -0.643 C17 A1A8J 7 A1A8J C19 C7 C 0 1 N N N N N N 12.139 0.305 1.297 2.670 -1.110 -0.749 C19 A1A8J 8 A1A8J C1 C8 C 0 1 N N N N N N 13.374 -0.646 1.499 1.472 -0.988 0.217 C1 A1A8J 9 A1A8J C10 C9 C 0 1 Y N N N N N 15.468 4.005 4.176 -3.600 0.246 1.623 C10 A1A8J 10 A1A8J C11 C10 C 0 1 Y N N N N N 15.647 4.606 5.427 -4.690 1.031 1.635 C11 A1A8J 11 A1A8J C13 C11 C 0 1 Y N N N N N 12.426 -0.950 -0.606 2.942 0.935 0.417 C13 A1A8J 12 A1A8J C15 C12 C 0 1 Y N N N N N 11.543 -0.650 -2.783 4.950 2.231 0.604 C15 A1A8J 13 A1A8J C16 C13 C 0 1 Y N N N N N 10.889 0.460 -2.356 5.623 1.301 -0.166 C16 A1A8J 14 A1A8J C18 C14 C 0 1 Y N N N N N 11.785 0.167 -0.154 3.614 0.004 -0.353 C18 A1A8J 15 A1A8J C2 C15 C 0 1 N N R N N N 14.811 0.022 1.427 0.164 -1.349 -0.490 C2 A1A8J 16 A1A8J C4 C16 C 0 1 N N N N N N 14.852 1.915 -0.088 -1.408 -3.191 -0.448 C4 A1A8J 17 A1A8J C5 C17 C 0 1 N N N N N N 14.995 2.417 1.345 -1.747 -2.193 0.687 C5 A1A8J 18 A1A8J C7 C18 C 0 1 Y N N N N N 15.045 0.181 5.680 -2.249 1.279 -2.118 C7 A1A8J 19 A1A8J C8 C19 C 0 1 Y N N N N N 15.362 2.403 5.780 -3.724 1.400 -0.356 C8 A1A8J 20 A1A8J N1 N2 N 0 1 N N N N N N 14.902 1.269 2.258 -0.984 -0.971 0.355 N1 A1A8J 21 A1A8J N3 N3 N 0 1 Y N N N N N 15.254 1.235 6.467 -3.338 1.777 -1.575 N3 A1A8J 22 A1A8J N4 N4 N 0 1 Y N N N N N 15.585 3.610 6.407 -4.775 1.726 0.456 N4 A1A8J 23 A1A8J O1 O1 O 0 1 N N N N N N 13.296 -1.299 2.756 1.667 -1.803 1.374 O1 A1A8J 24 A1A8J H3 H1 H 0 1 N N N N N N 14.626 -0.118 -0.753 0.365 -3.132 -1.730 H3 A1A8J 25 A1A8J H4 H2 H 0 1 N N N N N N 16.275 0.305 -0.180 0.725 -3.398 0.006 H4 A1A8J 26 A1A8J H13 H3 H 0 1 N N N N N N 12.749 -2.593 0.686 0.854 1.078 -0.081 H13 A1A8J 27 A1A8J H14 H4 H 0 1 N N N N N N 14.229 -1.921 -0.077 1.184 0.648 1.624 H14 A1A8J 28 A1A8J H15 H5 H 0 1 N N N N N N 12.879 -2.309 -2.272 3.088 2.776 1.496 H15 A1A8J 29 A1A8J H18 H6 H 0 1 N N N N N N 10.467 1.788 -0.684 5.482 -0.538 -1.244 H18 A1A8J 30 A1A8J H20 H7 H 0 1 N N N N N N 12.408 1.345 1.533 3.155 -2.079 -0.628 H20 A1A8J 31 A1A8J H19 H8 H 0 1 N N N N N N 11.299 -0.010 1.933 2.339 -0.979 -1.780 H19 A1A8J 32 A1A8J H10 H9 H 0 1 N N N N N N 15.470 4.514 3.224 -3.274 -0.415 2.412 H10 A1A8J 33 A1A8J H11 H10 H 0 1 N N N N N N 15.806 5.659 5.605 -5.395 1.103 2.450 H11 A1A8J 34 A1A8J H16 H11 H 0 1 N N N N N N 11.436 -0.950 -3.815 5.470 3.101 0.978 H16 A1A8J 35 A1A8J H17 H12 H 0 1 N N N N N N 10.278 1.015 -3.053 6.669 1.443 -0.394 H17 A1A8J 36 A1A8J H1 H13 H 0 1 N N N N N N 15.549 -0.710 1.786 0.107 -0.834 -1.449 H1 A1A8J 37 A1A8J H5 H14 H 0 1 N N N N N N 15.546 2.444 -0.757 -2.009 -2.991 -1.336 H5 A1A8J 38 A1A8J H6 H15 H 0 1 N N N N N N 13.821 2.051 -0.447 -1.537 -4.220 -0.115 H6 A1A8J 39 A1A8J H8 H16 H 0 1 N N N N N N 15.970 2.910 1.469 -2.816 -1.981 0.699 H8 A1A8J 40 A1A8J H7 H17 H 0 1 N N N N N N 14.191 3.134 1.568 -1.426 -2.591 1.650 H7 A1A8J 41 A1A8J H9 H18 H 0 1 N N N N N N 14.954 -0.778 6.167 -1.967 1.607 -3.108 H9 A1A8J 42 A1A8J H12 H19 H 0 1 N N N N N N 15.685 3.749 7.392 -5.477 2.356 0.231 H12 A1A8J 43 A1A8J H2 H20 H 0 1 N N N N N N 13.376 -0.657 3.452 2.504 -1.642 1.832 H2 A1A8J 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A8J C15 C16 DOUB Y N 1 A1A8J C15 C14 SING Y N 2 A1A8J C16 C17 SING Y N 3 A1A8J C14 C13 DOUB Y N 4 A1A8J C17 C18 DOUB Y N 5 A1A8J C13 C18 SING Y N 6 A1A8J C13 C12 SING N N 7 A1A8J C18 C19 SING N N 8 A1A8J C4 C3 SING N N 9 A1A8J C4 C5 SING N N 10 A1A8J C3 C2 SING N N 11 A1A8J C12 C1 SING N N 12 A1A8J C19 C1 SING N N 13 A1A8J C5 N1 SING N N 14 A1A8J C2 C1 SING N N 15 A1A8J C2 N1 SING N N 16 A1A8J C1 O1 SING N N 17 A1A8J N1 C6 SING N N 18 A1A8J C6 N2 DOUB Y N 19 A1A8J C6 C9 SING Y N 20 A1A8J C10 C9 SING Y N 21 A1A8J C10 C11 DOUB Y N 22 A1A8J N2 C7 SING Y N 23 A1A8J C9 C8 DOUB Y N 24 A1A8J C11 N4 SING Y N 25 A1A8J C7 N3 DOUB Y N 26 A1A8J C8 N4 SING Y N 27 A1A8J C8 N3 SING Y N 28 A1A8J C3 H3 SING N N 29 A1A8J C3 H4 SING N N 30 A1A8J C12 H13 SING N N 31 A1A8J C12 H14 SING N N 32 A1A8J C14 H15 SING N N 33 A1A8J C17 H18 SING N N 34 A1A8J C19 H20 SING N N 35 A1A8J C19 H19 SING N N 36 A1A8J C10 H10 SING N N 37 A1A8J C11 H11 SING N N 38 A1A8J C15 H16 SING N N 39 A1A8J C16 H17 SING N N 40 A1A8J C2 H1 SING N N 41 A1A8J C4 H5 SING N N 42 A1A8J C4 H6 SING N N 43 A1A8J C5 H8 SING N N 44 A1A8J C5 H7 SING N N 45 A1A8J C7 H9 SING N N 46 A1A8J N4 H12 SING N N 47 A1A8J O1 H2 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A8J SMILES ACDLabs 14.52 "OC1(Cc2ccccc2C1)C1CCCN1c1ncnc2[NH]ccc12" A1A8J InChI InChI 1.06 "InChI=1S/C19H20N4O/c24-19(10-13-4-1-2-5-14(13)11-19)16-6-3-9-23(16)18-15-7-8-20-17(15)21-12-22-18/h1-2,4-5,7-8,12,16,24H,3,6,9-11H2,(H,20,21,22)/t16-/m1/s1" A1A8J InChIKey InChI 1.06 MWZDBDHLXQKPPA-MRXNPFEDSA-N A1A8J SMILES_CANONICAL CACTVS 3.385 "OC1(Cc2ccccc2C1)[C@H]3CCCN3c4ncnc5[nH]ccc45" A1A8J SMILES CACTVS 3.385 "OC1(Cc2ccccc2C1)[CH]3CCCN3c4ncnc5[nH]ccc45" A1A8J SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CC(C2)([C@H]3CCCN3c4c5cc[nH]c5ncn4)O" A1A8J SMILES "OpenEye OEToolkits" 3.1.0.0 "c1ccc2c(c1)CC(C2)(C3CCCN3c4c5cc[nH]c5ncn4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A8J "SYSTEMATIC NAME" ACDLabs 14.52 "2-[(2R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-2-yl]-2,3-dihydro-1H-inden-2-ol" A1A8J "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "2-[(2~{R})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)pyrrolidin-2-yl]-1,3-dihydroinden-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A8J "Create component" 2024-09-20 RCSB A1A8J "Initial release" 2025-06-11 RCSB #