data_A1A98 # _chem_comp.id A1A98 _chem_comp.name "{1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentyl}methanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-24 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.282 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A98 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HES _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A98 N2 N1 N 0 1 Y N N N N N 14.771 -0.227 4.357 0.409 -1.298 -0.658 N2 A1A98 1 A1A98 C3 C1 C 0 1 Y N N N N N 15.031 0.799 3.481 0.463 -0.152 0.015 C3 A1A98 2 A1A98 C6 C2 C 0 1 Y N N N N N 15.317 2.121 4.023 1.718 0.438 0.227 C6 A1A98 3 A1A98 C9 C3 C 0 1 N N N N N N 14.301 -0.208 -0.153 -2.185 -0.213 -1.368 C9 A1A98 4 A1A98 C12 C4 C 0 1 N N N N N N 12.812 -0.670 1.752 -3.132 0.813 0.632 C12 A1A98 5 A1A98 C1 C5 C 0 1 N N N N N N 15.064 -1.966 1.603 -2.155 -1.508 0.805 C1 A1A98 6 A1A98 C10 C6 C 0 1 N N N N N N 12.854 -0.061 -0.649 -2.602 1.230 -1.744 C10 A1A98 7 A1A98 C11 C7 C 0 1 N N N N N N 11.935 -0.232 0.560 -3.514 1.676 -0.583 C11 A1A98 8 A1A98 C2 C8 C 0 1 N N N N N N 14.331 -0.559 1.353 -2.000 -0.126 0.168 C2 A1A98 9 A1A98 C4 C9 C 0 1 Y N N N N N 14.782 0.023 5.705 1.507 -1.870 -1.117 C4 A1A98 10 A1A98 C5 C10 C 0 1 Y N N N N N 15.287 2.195 5.449 2.861 -0.207 -0.282 C5 A1A98 11 A1A98 C7 C11 C 0 1 Y N N N N N 15.647 3.485 3.625 2.195 1.649 0.891 C7 A1A98 12 A1A98 C8 C12 C 0 1 Y N N N N N 15.788 4.272 4.763 3.531 1.667 0.754 C8 A1A98 13 A1A98 N1 N2 N 0 1 N N N N N N 15.030 0.531 2.106 -0.690 0.444 0.495 N1 A1A98 14 A1A98 N3 N3 N 0 1 Y N N N N N 15.020 1.187 6.303 2.704 -1.353 -0.943 N3 A1A98 15 A1A98 N4 N4 N 0 1 Y N N N N N 15.570 3.469 5.874 3.941 0.561 0.055 N4 A1A98 16 A1A98 O1 O1 O 0 1 N N N N N N 14.938 -2.431 2.921 -1.891 -1.418 2.207 O1 A1A98 17 A1A98 H10 H1 H 0 1 N N N N N N 14.797 -1.009 -0.720 -2.973 -0.922 -1.622 H10 A1A98 18 A1A98 H9 H2 H 0 1 N N N N N N 14.835 0.740 -0.313 -1.249 -0.488 -1.855 H9 A1A98 19 A1A98 H16 H3 H 0 1 N N N N N N 12.611 -0.018 2.615 -2.780 1.449 1.445 H16 A1A98 20 A1A98 H15 H4 H 0 1 N N N N N N 12.577 -1.712 2.017 -3.991 0.229 0.961 H15 A1A98 21 A1A98 H2 H5 H 0 1 N N N N N N 14.625 -2.713 0.926 -3.172 -1.868 0.649 H2 A1A98 22 A1A98 H3 H6 H 0 1 N N N N N N 16.134 -1.848 1.375 -1.449 -2.201 0.347 H3 A1A98 23 A1A98 H11 H7 H 0 1 N N N N N N 12.709 0.935 -1.094 -1.726 1.875 -1.810 H11 A1A98 24 A1A98 H12 H8 H 0 1 N N N N N N 12.634 -0.834 -1.400 -3.152 1.235 -2.685 H12 A1A98 25 A1A98 H13 H9 H 0 1 N N N N N N 11.437 0.721 0.791 -4.560 1.509 -0.845 H13 A1A98 26 A1A98 H14 H10 H 0 1 N N N N N N 11.177 -1.001 0.349 -3.348 2.730 -0.361 H14 A1A98 27 A1A98 H5 H11 H 0 1 N N N N N N 14.575 -0.817 6.352 1.418 -2.800 -1.659 H5 A1A98 28 A1A98 H6 H12 H 0 1 N N N N N N 15.763 3.829 2.608 1.589 2.388 1.395 H6 A1A98 29 A1A98 H7 H13 H 0 1 N N N N N N 16.026 5.325 4.779 4.184 2.436 1.138 H7 A1A98 30 A1A98 H4 H14 H 0 1 N N N N N N 15.996 0.410 1.877 -0.632 1.239 1.047 H4 A1A98 31 A1A98 H8 H15 H 0 1 N N N N N N 15.612 3.769 6.827 4.862 0.355 -0.169 H8 A1A98 32 A1A98 H1 H16 H 0 1 N N N N N N 15.389 -3.262 3.008 -1.972 -2.260 2.677 H1 A1A98 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A98 C10 C9 SING N N 1 A1A98 C10 C11 SING N N 2 A1A98 C9 C2 SING N N 3 A1A98 C11 C12 SING N N 4 A1A98 C2 C1 SING N N 5 A1A98 C2 C12 SING N N 6 A1A98 C2 N1 SING N N 7 A1A98 C1 O1 SING N N 8 A1A98 N1 C3 SING N N 9 A1A98 C3 C6 DOUB Y N 10 A1A98 C3 N2 SING Y N 11 A1A98 C7 C6 SING Y N 12 A1A98 C7 C8 DOUB Y N 13 A1A98 C6 C5 SING Y N 14 A1A98 N2 C4 DOUB Y N 15 A1A98 C8 N4 SING Y N 16 A1A98 C5 N4 SING Y N 17 A1A98 C5 N3 DOUB Y N 18 A1A98 C4 N3 SING Y N 19 A1A98 C9 H10 SING N N 20 A1A98 C9 H9 SING N N 21 A1A98 C12 H16 SING N N 22 A1A98 C12 H15 SING N N 23 A1A98 C1 H2 SING N N 24 A1A98 C1 H3 SING N N 25 A1A98 C10 H11 SING N N 26 A1A98 C10 H12 SING N N 27 A1A98 C11 H13 SING N N 28 A1A98 C11 H14 SING N N 29 A1A98 C4 H5 SING N N 30 A1A98 C7 H6 SING N N 31 A1A98 C8 H7 SING N N 32 A1A98 N1 H4 SING N N 33 A1A98 N4 H8 SING N N 34 A1A98 O1 H1 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A98 SMILES ACDLabs 14.52 "OCC1(CCCC1)Nc1ncnc2[NH]ccc21" A1A98 InChI InChI 1.06 "InChI=1S/C12H16N4O/c17-7-12(4-1-2-5-12)16-11-9-3-6-13-10(9)14-8-15-11/h3,6,8,17H,1-2,4-5,7H2,(H2,13,14,15,16)" A1A98 InChIKey InChI 1.06 WBNKWKYRGAWNJC-UHFFFAOYSA-N A1A98 SMILES_CANONICAL CACTVS 3.385 "OCC1(CCCC1)Nc2ncnc3[nH]ccc23" A1A98 SMILES CACTVS 3.385 "OCC1(CCCC1)Nc2ncnc3[nH]ccc23" A1A98 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC3(CCCC3)CO" A1A98 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)NC3(CCCC3)CO" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A98 "SYSTEMATIC NAME" ACDLabs 14.52 "{1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]cyclopentyl}methanol" A1A98 "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "[1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-ylamino)cyclopentyl]methanol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A98 "Create component" 2024-09-24 RCSB A1A98 "Initial release" 2025-06-11 RCSB #