data_A1A9B
#
_chem_comp.id A1A9B
_chem_comp.name "(10S,11R,12S,15S,18S)-15-(2-amino-2-oxoethyl)-10,11,23-trihydroxy-18-{[(3R)-3-methyl-2-oxopentanoyl]amino}-9,14,17-trioxo-N-[(1Z)-prop-1-en-1-yl]-8,13,16-triazatetracyclo[18.3.1.0(2,7).0(6,10)]tetracosa-1(24),2,4,6,20,22-hexaene-12-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H38 N6 O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-09-23
_chem_comp.pdbx_modified_date 2025-03-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 678.689
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1A9B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9AW6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1A9B C10 C1 C 0 1 N N S N N N 58.306 -133.749 33.775 1.883 -1.337 2.535 C10 A1A9B 1
A1A9B C13 C2 C 0 1 Y N N N N N 57.084 -134.558 36.787 2.606 -1.411 -0.175 C13 A1A9B 2
A1A9B C15 C3 C 0 1 Y N N N N N 55.143 -135.949 37.190 3.605 -2.625 -2.009 C15 A1A9B 3
A1A9B C17 C4 C 0 1 Y N N N N N 55.255 -134.567 35.203 4.217 -3.135 0.252 C17 A1A9B 4
A1A9B C20 C5 C 0 1 Y N N N N N 58.195 -136.839 38.823 0.751 -0.219 -2.085 C20 A1A9B 5
A1A9B C21 C6 C 0 1 Y N N N N N 58.807 -137.274 39.992 0.102 0.658 -2.946 C21 A1A9B 6
A1A9B C22 C7 C 0 1 Y N N N N N 58.265 -136.890 41.243 0.619 0.937 -4.189 C22 A1A9B 7
A1A9B C24 C8 C 0 1 Y N N N N N 56.526 -135.598 40.115 2.485 -0.496 -3.746 C24 A1A9B 8
A1A9B C26 C9 C 0 1 N N R N N N 61.460 -137.717 40.030 -0.964 2.617 -1.814 C26 A1A9B 9
A1A9B C01 C10 C 0 1 N N N N N N 60.018 -137.702 31.074 -5.119 -3.541 1.216 C01 A1A9B 10
A1A9B C02 C11 C 0 1 N N N N N N 58.519 -137.952 30.791 -3.691 -3.406 0.684 C02 A1A9B 11
A1A9B C03 C12 C 0 1 N N R N N N 57.934 -136.922 29.817 -2.722 -3.250 1.858 C03 A1A9B 12
A1A9B C04 C13 C 0 1 N N N N N N 56.957 -137.617 28.869 -2.723 -4.531 2.693 C04 A1A9B 13
A1A9B C05 C14 C 0 1 N N N N N N 57.195 -135.837 30.606 -1.333 -2.994 1.332 C05 A1A9B 14
A1A9B C07 C15 C 0 1 N N N N N N 57.985 -134.855 31.509 -0.338 -2.274 2.176 C07 A1A9B 15
A1A9B C11 C16 C 0 1 N N N N N N 57.294 -133.089 34.720 3.289 -1.826 2.184 C11 A1A9B 16
A1A9B C12 C17 C 0 1 Y N N N N N 56.514 -134.102 35.604 3.374 -2.137 0.712 C12 A1A9B 17
A1A9B C14 C18 C 0 1 Y N N N N N 56.413 -135.500 37.567 2.734 -1.639 -1.548 C14 A1A9B 18
A1A9B C16 C19 C 0 1 Y N N N N N 54.568 -135.489 36.000 4.333 -3.382 -1.103 C16 A1A9B 19
A1A9B C19 C20 C 0 1 Y N N N N N 57.068 -135.964 38.885 1.977 -0.776 -2.482 C19 A1A9B 20
A1A9B C23 C21 C 0 1 Y N N N N N 57.127 -136.059 41.296 1.811 0.360 -4.594 C23 A1A9B 21
A1A9B C25 C22 C 0 1 N N S N N N 60.080 -138.217 39.491 -1.125 1.144 -2.207 C25 A1A9B 22
A1A9B C27 C23 C 0 1 N N S N N N 61.819 -136.245 39.747 -1.337 2.786 -0.340 C27 A1A9B 23
A1A9B C29 C24 C 0 1 N N N N N N 61.186 -134.778 37.701 -0.320 2.549 1.836 C29 A1A9B 24
A1A9B C31 C25 C 0 1 N N S N N N 61.362 -134.550 36.185 0.857 2.320 2.746 C31 A1A9B 25
A1A9B C33 C26 C 0 1 N N N N N N 59.465 -134.482 34.490 1.762 0.144 2.292 C33 A1A9B 26
A1A9B C35 C27 C 0 1 N N N N N N 62.632 -133.719 36.015 2.145 2.736 2.033 C35 A1A9B 27
A1A9B C36 C28 C 0 1 N N N N N N 63.032 -133.259 34.595 2.237 4.240 1.998 C36 A1A9B 28
A1A9B C39 C29 C 0 1 N N N N N N 63.258 -136.030 40.214 -2.452 1.834 0.011 C39 A1A9B 29
A1A9B C42 C30 C 0 1 N N N N N N 62.602 -134.294 41.995 -4.337 0.540 -0.622 C42 A1A9B 30
A1A9B C43 C31 C 0 1 N N N N N N 63.079 -133.156 42.522 -5.221 0.192 -1.538 C43 A1A9B 31
A1A9B C44 C32 C 0 1 N N N N N N 64.578 -132.884 42.290 -5.168 0.812 -2.910 C44 A1A9B 32
A1A9B C46 C33 C 0 1 N N N N N N 59.960 -138.117 37.919 -1.167 0.275 -0.965 C46 A1A9B 33
A1A9B N09 N1 N 0 1 N N N N N N 57.580 -134.672 32.914 0.905 -2.045 1.705 N09 A1A9B 34
A1A9B N28 N2 N 0 1 N N N N N N 61.881 -135.939 38.314 -0.147 2.488 0.485 N28 A1A9B 35
A1A9B N32 N3 N 0 1 N N N N N N 60.256 -133.822 35.565 0.923 0.877 3.091 N32 A1A9B 36
A1A9B N38 N4 N 0 1 N N N N N N 64.428 -132.932 34.293 3.295 4.837 1.415 N38 A1A9B 37
A1A9B N41 N5 N 0 1 N N N N N N 63.623 -135.077 41.292 -3.355 1.479 -0.924 N41 A1A9B 38
A1A9B N48 N6 N 0 1 N N N N N N 58.914 -137.343 37.857 0.001 -0.389 -0.923 N48 A1A9B 39
A1A9B O06 O1 O 0 1 N N N N N N 56.013 -135.742 30.523 -1.027 -3.372 0.226 O06 A1A9B 40
A1A9B O08 O2 O 0 1 N N N N N N 58.916 -134.259 31.072 -0.645 -1.894 3.286 O08 A1A9B 41
A1A9B O18 O3 O 0 1 N N N N N N 54.449 -136.878 37.991 3.740 -2.844 -3.343 O18 A1A9B 42
A1A9B O30 O4 O 0 1 N N N N N N 60.533 -134.037 38.359 -1.415 2.787 2.301 O30 A1A9B 43
A1A9B O34 O5 O 0 1 N N N N N N 59.743 -135.591 34.162 2.394 0.678 1.406 O34 A1A9B 44
A1A9B O37 O6 O 0 1 N N N N N N 62.201 -133.161 33.752 1.359 4.912 2.495 O37 A1A9B 45
A1A9B O40 O7 O 0 1 N N N N N N 64.126 -136.637 39.679 -2.536 1.388 1.136 O40 A1A9B 46
A1A9B O45 O8 O 0 1 N N N N N N 61.481 -137.916 41.407 0.393 3.019 -2.014 O45 A1A9B 47
A1A9B O47 O9 O 0 1 N N N N N N 60.618 -138.599 37.052 -2.076 0.196 -0.166 O47 A1A9B 48
A1A9B O49 O10 O 0 1 N N N N N N 59.901 -139.415 39.861 -2.293 0.983 -3.006 O49 A1A9B 49
A1A9B H101 H1 H 0 0 N N N N N N 58.748 -132.958 33.151 1.682 -1.547 3.586 H101 A1A9B 50
A1A9B H131 H2 H 0 0 N N N N N N 58.046 -134.183 37.102 1.910 -0.671 0.189 H131 A1A9B 51
A1A9B H171 H3 H 0 0 N N N N N N 54.816 -134.215 34.281 4.789 -3.722 0.955 H171 A1A9B 52
A1A9B H221 H4 H 0 0 N N N N N N 58.724 -137.234 42.158 0.094 1.608 -4.852 H221 A1A9B 53
A1A9B H241 H5 H 0 0 N N N N N N 55.652 -134.966 40.159 3.411 -0.949 -4.065 H241 A1A9B 54
A1A9B H261 H6 H 0 0 N N N N N N 62.236 -138.340 39.561 -1.621 3.232 -2.429 H261 A1A9B 55
A1A9B H013 H7 H 0 0 N N N N N N 60.391 -138.463 31.775 -5.380 -2.650 1.787 H013 A1A9B 56
A1A9B H011 H8 H 0 0 N N N N N N 60.584 -137.762 30.133 -5.810 -3.652 0.380 H011 A1A9B 57
A1A9B H012 H9 H 0 0 N N N N N N 60.146 -136.703 31.516 -5.185 -4.417 1.861 H012 A1A9B 58
A1A9B H021 H10 H 0 0 N N N N N N 58.403 -138.956 30.357 -3.430 -4.297 0.113 H021 A1A9B 59
A1A9B H022 H11 H 0 0 N N N N N N 57.965 -137.897 31.740 -3.625 -2.529 0.039 H022 A1A9B 60
A1A9B H031 H12 H 0 0 N N N N N N 58.748 -136.464 29.236 -3.036 -2.411 2.479 H031 A1A9B 61
A1A9B H042 H13 H 0 0 N N N N N N 56.536 -136.879 28.170 -2.409 -5.370 2.072 H042 A1A9B 62
A1A9B H043 H14 H 0 0 N N N N N N 57.487 -138.397 28.304 -2.033 -4.420 3.530 H043 A1A9B 63
A1A9B H041 H15 H 0 0 N N N N N N 56.144 -138.075 29.452 -3.728 -4.716 3.074 H041 A1A9B 64
A1A9B H111 H16 H 0 0 N N N N N N 57.836 -132.396 35.381 4.014 -1.050 2.432 H111 A1A9B 65
A1A9B H112 H17 H 0 0 N N N N N N 56.569 -132.526 34.114 3.513 -2.726 2.756 H112 A1A9B 66
A1A9B H161 H18 H 0 0 N N N N N N 53.595 -135.845 35.697 4.988 -4.164 -1.456 H161 A1A9B 67
A1A9B H231 H19 H 0 0 N N N N N N 56.715 -135.775 42.253 2.213 0.578 -5.573 H231 A1A9B 68
A1A9B H271 H20 H 0 0 N N N N N N 61.131 -135.570 40.278 -1.661 3.811 -0.160 H271 A1A9B 69
A1A9B H311 H21 H 0 0 N N N N N N 61.498 -135.523 35.690 0.735 2.908 3.656 H311 A1A9B 70
A1A9B H352 H22 H 0 0 N N N N N N 62.511 -132.813 36.627 3.004 2.332 2.569 H352 A1A9B 71
A1A9B H351 H23 H 0 0 N N N N N N 63.466 -134.318 36.409 2.138 2.349 1.014 H351 A1A9B 72
A1A9B H421 H24 H 0 0 N N N N N N 61.570 -134.602 42.080 -4.375 0.095 0.362 H421 A1A9B 73
A1A9B H431 H25 H 0 0 N N N N N N 62.451 -132.473 43.075 -5.983 -0.537 -1.303 H431 A1A9B 74
A1A9B H443 H26 H 0 0 N N N N N N 64.856 -131.931 42.763 -5.971 0.405 -3.524 H443 A1A9B 75
A1A9B H442 H27 H 0 0 N N N N N N 65.171 -133.699 42.731 -5.287 1.892 -2.826 H442 A1A9B 76
A1A9B H441 H28 H 0 0 N N N N N N 64.778 -132.829 41.210 -4.207 0.587 -3.373 H441 A1A9B 77
A1A9B H091 H29 H 0 0 N N N N N N 56.802 -135.184 33.278 1.151 -2.349 0.818 H091 A1A9B 78
A1A9B H281 H30 H 0 0 N N N N N N 62.417 -136.541 37.721 0.709 2.262 0.088 H281 A1A9B 79
A1A9B H321 H31 H 0 0 N N N N N N 60.034 -132.893 35.859 0.417 0.487 3.821 H321 A1A9B 80
A1A9B H382 H32 H 0 0 N N N N N N 64.683 -132.626 33.376 3.998 4.299 1.018 H382 A1A9B 81
A1A9B H381 H33 H 0 0 N N N N N N 65.126 -133.015 35.004 3.355 5.805 1.393 H381 A1A9B 82
A1A9B H411 H34 H 0 0 N N N N N N 64.584 -134.967 41.544 -3.321 1.878 -1.807 H411 A1A9B 83
A1A9B H481 H35 H 0 0 N N N N N N 58.618 -137.099 36.933 0.290 -0.927 -0.169 H481 A1A9B 84
A1A9B H181 H36 H 0 0 N N N N N N 54.970 -137.088 38.757 4.434 -2.315 -3.760 H181 A1A9B 85
A1A9B H451 H37 H 0 0 N N N N N N 61.262 -138.820 41.600 0.567 3.942 -1.786 H451 A1A9B 86
A1A9B H491 H38 H 0 0 N N N N N N 60.632 -139.949 39.572 -2.454 0.072 -3.289 H491 A1A9B 87
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1A9B C02 C01 SING N N 1
A1A9B C03 C02 SING N N 2
A1A9B C04 C03 SING N N 3
A1A9B C05 C03 SING N N 4
A1A9B O06 C05 DOUB N N 5
A1A9B C07 C05 SING N N 6
A1A9B O08 C07 DOUB N N 7
A1A9B N09 C07 SING N N 8
A1A9B C10 N09 SING N N 9
A1A9B C11 C10 SING N N 10
A1A9B C12 C11 SING N N 11
A1A9B C13 C12 DOUB Y N 12
A1A9B C14 C13 SING Y N 13
A1A9B C17 C16 DOUB Y N 14
A1A9B C16 C15 SING Y N 15
A1A9B O18 C15 SING N N 16
A1A9B C15 C14 DOUB Y N 17
A1A9B C19 C14 SING N N 18
A1A9B C20 C19 DOUB Y N 19
A1A9B C21 C20 SING Y N 20
A1A9B C23 C22 SING Y N 21
A1A9B C24 C23 DOUB Y N 22
A1A9B C22 C21 DOUB Y N 23
A1A9B C25 C21 SING N N 24
A1A9B C29 N28 SING N N 25
A1A9B O30 C29 DOUB N N 26
A1A9B C31 C29 SING N N 27
A1A9B C33 N32 SING N N 28
A1A9B O34 C33 DOUB N N 29
A1A9B N32 C31 SING N N 30
A1A9B C35 C31 SING N N 31
A1A9B C36 C35 SING N N 32
A1A9B O37 C36 DOUB N N 33
A1A9B N38 C36 SING N N 34
A1A9B N28 C27 SING N N 35
A1A9B C39 C27 SING N N 36
A1A9B O40 C39 DOUB N N 37
A1A9B N41 C39 SING N N 38
A1A9B C42 N41 SING N N 39
A1A9B C43 C42 DOUB N Z 40
A1A9B C44 C43 SING N N 41
A1A9B C27 C26 SING N N 42
A1A9B O45 C26 SING N N 43
A1A9B C26 C25 SING N N 44
A1A9B O47 C46 DOUB N N 45
A1A9B N48 C46 SING N N 46
A1A9B C46 C25 SING N N 47
A1A9B O49 C25 SING N N 48
A1A9B C10 C33 SING N N 49
A1A9B C12 C17 SING Y N 50
A1A9B C19 C24 SING Y N 51
A1A9B C20 N48 SING N N 52
A1A9B C10 H101 SING N N 53
A1A9B C13 H131 SING N N 54
A1A9B C17 H171 SING N N 55
A1A9B C22 H221 SING N N 56
A1A9B C24 H241 SING N N 57
A1A9B C26 H261 SING N N 58
A1A9B C01 H013 SING N N 59
A1A9B C01 H011 SING N N 60
A1A9B C01 H012 SING N N 61
A1A9B C02 H021 SING N N 62
A1A9B C02 H022 SING N N 63
A1A9B C03 H031 SING N N 64
A1A9B C04 H042 SING N N 65
A1A9B C04 H043 SING N N 66
A1A9B C04 H041 SING N N 67
A1A9B C11 H111 SING N N 68
A1A9B C11 H112 SING N N 69
A1A9B C16 H161 SING N N 70
A1A9B C23 H231 SING N N 71
A1A9B C27 H271 SING N N 72
A1A9B C31 H311 SING N N 73
A1A9B C35 H352 SING N N 74
A1A9B C35 H351 SING N N 75
A1A9B C42 H421 SING N N 76
A1A9B C43 H431 SING N N 77
A1A9B C44 H443 SING N N 78
A1A9B C44 H442 SING N N 79
A1A9B C44 H441 SING N N 80
A1A9B N09 H091 SING N N 81
A1A9B N28 H281 SING N N 82
A1A9B N32 H321 SING N N 83
A1A9B N38 H382 SING N N 84
A1A9B N38 H381 SING N N 85
A1A9B N41 H411 SING N N 86
A1A9B N48 H481 SING N N 87
A1A9B O18 H181 SING N N 88
A1A9B O45 H451 SING N N 89
A1A9B O49 H491 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1A9B InChI InChI 1.06 "InChI=1S/C33H38N6O10/c1-4-11-35-30(46)25-27(43)33(49)19-8-6-7-17(24(19)39-32(33)48)18-12-16(9-10-22(18)40)13-20(37-31(47)26(42)15(3)5-2)28(44)36-21(14-23(34)41)29(45)38-25/h4,6-12,15,20-21,25,27,40,43,49H,5,13-14H2,1-3H3,(H2,34,41)(H,35,46)(H,36,44)(H,37,47)(H,38,45)(H,39,48)/b11-4-/t15-,20+,21+,25+,27-,33+/m1/s1"
A1A9B InChIKey InChI 1.06 ZIAXNZCTODBCKW-NKGUOCGVSA-N
A1A9B SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](C)C(=O)C(=O)N[C@H]1Cc2ccc(O)c(c2)c3cccc4c3NC(=O)[C@@]4(O)[C@H](O)[C@H](NC(=O)[C@H](CC(N)=O)NC1=O)C(=O)N\C=C/C"
A1A9B SMILES CACTVS 3.385 "CC[CH](C)C(=O)C(=O)N[CH]1Cc2ccc(O)c(c2)c3cccc4c3NC(=O)[C]4(O)[CH](O)[CH](NC(=O)[CH](CC(N)=O)NC1=O)C(=O)NC=CC"
A1A9B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](C)C(=O)C(=O)N[C@H]1Cc2ccc(c(c2)-c3cccc4c3NC(=O)[C@]4([C@@H]([C@H](NC(=O)[C@@H](NC1=O)CC(=O)N)C(=O)N/C=C\C)O)O)O"
A1A9B SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(=O)C(=O)NC1Cc2ccc(c(c2)-c3cccc4c3NC(=O)C4(C(C(NC(=O)C(NC1=O)CC(=O)N)C(=O)NC=CC)O)O)O"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1A9B "Create component" 2024-09-23 RCSB
A1A9B "Initial release" 2025-03-19 RCSB
#