data_A1A9K # _chem_comp.id A1A9K _chem_comp.name "(3aR,6S,6aS)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)octahydrocyclopenta[b]pyrrol-6-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H16 N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-09-23 _chem_comp.pdbx_modified_date 2025-06-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 244.292 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1A9K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7HE8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1A9K N2 N1 N 0 1 Y N N N N N 14.719 -0.112 4.494 -0.605 -1.381 -0.757 N2 A1A9K 1 A1A9K C3 C1 C 0 1 N N N N N N 14.887 -1.302 -0.548 3.985 0.522 -0.670 C3 A1A9K 2 A1A9K C6 C2 C 0 1 N N N N N N 14.566 1.834 1.245 0.514 1.804 -0.401 C6 A1A9K 3 A1A9K C9 C3 C 0 1 Y N N N N N 15.249 2.203 5.720 -3.072 -0.437 -0.153 C9 A1A9K 4 A1A9K C12 C4 C 0 1 Y N N N N N 15.674 4.334 5.126 -3.755 1.426 0.897 C12 A1A9K 5 A1A9K C1 C5 C 0 1 N N S N N N 15.310 -1.727 1.835 2.588 -0.520 1.035 C1 A1A9K 6 A1A9K C10 C6 C 0 1 Y N N N N N 15.198 2.243 4.282 -1.929 0.297 0.213 C10 A1A9K 7 A1A9K C11 C7 C 0 1 Y N N N N N 15.477 3.628 3.955 -2.414 1.498 0.891 C11 A1A9K 8 A1A9K C13 C8 C 0 1 N N S N N N 14.295 -0.536 1.750 1.688 -0.279 -0.201 C13 A1A9K 9 A1A9K C2 C9 C 0 1 N N N N N N 15.267 -2.388 0.444 4.013 -0.557 0.432 C2 A1A9K 10 A1A9K C4 C10 C 0 1 N N R N N N 13.964 -0.350 0.233 2.518 0.674 -1.101 C4 A1A9K 11 A1A9K C5 C11 C 0 1 N N N N N N 14.148 1.130 -0.088 2.011 2.078 -0.687 C5 A1A9K 12 A1A9K C7 C12 C 0 1 Y N N N N N 14.908 0.976 3.676 -0.665 -0.218 -0.114 C7 A1A9K 13 A1A9K C8 C13 C 0 1 Y N N N N N 14.802 0.017 5.864 -1.704 -2.037 -1.082 C8 A1A9K 14 A1A9K N1 N2 N 0 1 N N N N N N 14.807 0.778 2.270 0.489 0.465 0.225 N1 A1A9K 15 A1A9K N3 N3 N 0 1 Y N N N N N 15.062 1.132 6.527 -2.909 -1.592 -0.795 N3 A1A9K 16 A1A9K N4 N4 N 0 1 Y N N N N N 15.542 3.476 6.206 -4.161 0.273 0.275 N4 A1A9K 17 A1A9K O1 O1 O 0 1 N N N N N N 14.962 -2.637 2.888 2.270 -1.767 1.655 O1 A1A9K 18 A1A9K H8 H1 H 0 1 N N N N N N 14.356 -1.734 -1.409 4.358 1.468 -0.276 H8 A1A9K 19 A1A9K H7 H2 H 0 1 N N N N N N 15.783 -0.769 -0.899 4.592 0.206 -1.518 H7 A1A9K 20 A1A9K H12 H3 H 0 1 N N N N N N 15.485 2.417 1.087 0.116 2.551 0.285 H12 A1A9K 21 A1A9K H11 H4 H 0 1 N N N N N N 13.761 2.504 1.582 -0.056 1.800 -1.329 H11 A1A9K 22 A1A9K H15 H5 H 0 1 N N N N N N 15.896 5.389 5.190 -4.415 2.165 1.326 H15 A1A9K 23 A1A9K H1 H6 H 0 1 N N N N N N 16.317 -1.317 2.002 2.490 0.299 1.747 H1 A1A9K 24 A1A9K H14 H7 H 0 1 N N N N N N 15.523 4.041 2.958 -1.810 2.290 1.308 H14 A1A9K 25 A1A9K H3 H8 H 0 1 N N N N N N 13.375 -0.814 2.285 1.429 -1.211 -0.703 H3 A1A9K 26 A1A9K H5 H9 H 0 1 N N N N N N 14.517 -3.192 0.430 4.220 -1.536 0.002 H5 A1A9K 27 A1A9K H6 H10 H 0 1 N N N N N N 16.254 -2.803 0.191 4.754 -0.308 1.191 H6 A1A9K 28 A1A9K H2 H11 H 0 1 N N N N N N 12.916 -0.635 0.058 2.377 0.471 -2.162 H2 A1A9K 29 A1A9K H10 H12 H 0 1 N N N N N N 14.934 1.258 -0.846 2.128 2.791 -1.503 H10 A1A9K 30 A1A9K H9 H13 H 0 1 N N N N N N 13.205 1.556 -0.462 2.522 2.428 0.211 H9 A1A9K 31 A1A9K H13 H14 H 0 1 N N N N N N 14.640 -0.875 6.451 -1.611 -2.978 -1.604 H13 A1A9K 32 A1A9K H16 H15 H 0 1 N N N N N N 15.640 3.727 7.169 -5.084 0.001 0.155 H16 A1A9K 33 A1A9K H4 H16 H 0 1 N N N N N N 15.002 -2.186 3.723 2.829 -1.983 2.414 H4 A1A9K 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1A9K C3 C4 SING N N 1 A1A9K C3 C2 SING N N 2 A1A9K C5 C4 SING N N 3 A1A9K C5 C6 SING N N 4 A1A9K C4 C13 SING N N 5 A1A9K C2 C1 SING N N 6 A1A9K C6 N1 SING N N 7 A1A9K C13 C1 SING N N 8 A1A9K C13 N1 SING N N 9 A1A9K C1 O1 SING N N 10 A1A9K N1 C7 SING N N 11 A1A9K C7 C10 DOUB Y N 12 A1A9K C7 N2 SING Y N 13 A1A9K C11 C10 SING Y N 14 A1A9K C11 C12 DOUB Y N 15 A1A9K C10 C9 SING Y N 16 A1A9K N2 C8 DOUB Y N 17 A1A9K C12 N4 SING Y N 18 A1A9K C9 N4 SING Y N 19 A1A9K C9 N3 DOUB Y N 20 A1A9K C8 N3 SING Y N 21 A1A9K C3 H8 SING N N 22 A1A9K C3 H7 SING N N 23 A1A9K C6 H12 SING N N 24 A1A9K C6 H11 SING N N 25 A1A9K C12 H15 SING N N 26 A1A9K C1 H1 SING N N 27 A1A9K C11 H14 SING N N 28 A1A9K C13 H3 SING N N 29 A1A9K C2 H5 SING N N 30 A1A9K C2 H6 SING N N 31 A1A9K C4 H2 SING N N 32 A1A9K C5 H10 SING N N 33 A1A9K C5 H9 SING N N 34 A1A9K C8 H13 SING N N 35 A1A9K N4 H16 SING N N 36 A1A9K O1 H4 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1A9K SMILES ACDLabs 14.52 "OC1CCC2CCN(c3ncnc4[NH]ccc34)C12" A1A9K InChI InChI 1.06 "InChI=1S/C13H16N4O/c18-10-2-1-8-4-6-17(11(8)10)13-9-3-5-14-12(9)15-7-16-13/h3,5,7-8,10-11,18H,1-2,4,6H2,(H,14,15,16)/t8-,10+,11+/m1/s1" A1A9K InChIKey InChI 1.06 HFJBSPXTGIAUDA-MIMYLULJSA-N A1A9K SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CC[C@@H]2CCN([C@H]12)c3ncnc4[nH]ccc34" A1A9K SMILES CACTVS 3.385 "O[CH]1CC[CH]2CCN([CH]12)c3ncnc4[nH]ccc34" A1A9K SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CC[C@@H]4[C@H]3[C@H](CC4)O" A1A9K SMILES "OpenEye OEToolkits" 3.1.0.0 "c1c[nH]c2c1c(ncn2)N3CCC4C3C(CC4)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1A9K "SYSTEMATIC NAME" ACDLabs 14.52 "(3aR,6S,6aS)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)octahydrocyclopenta[b]pyrrol-6-ol" A1A9K "SYSTEMATIC NAME" "OpenEye OEToolkits" 3.1.0.0 "(3~{a}~{R},6~{S},6~{a}~{S})-1-(7~{H}-pyrrolo[2,3-d]pyrimidin-4-yl)-3,3~{a},4,5,6,6~{a}-hexahydro-2~{H}-cyclopenta[b]pyrrol-6-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1A9K "Create component" 2024-09-23 RCSB A1A9K "Initial release" 2025-06-11 RCSB #