data_A1AA0 # _chem_comp.id A1AA0 _chem_comp.name "4,6,7-trifluoro-N-{(2S)-1-[(3R,5'R)-5'-(iminomethyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidin]-1'-yl]-4-methyl-1-oxopentan-2-yl}-N-methyl-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms EDP-235 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.549 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AA0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8VDJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AA0 C4 C1 C 0 1 N N N N N N 15.778 13.104 -1.294 -0.848 1.503 1.386 C4 A1AA0 1 A1AA0 C5 C2 C 0 1 N N S N N N 15.475 12.809 -2.769 -0.468 0.155 0.770 C5 A1AA0 2 A1AA0 C7 C3 C 0 1 N N N N N N 17.195 14.327 -3.775 1.306 1.271 -0.660 C7 A1AA0 3 A1AA0 C8 C4 C 0 1 N N N N N N 17.206 11.861 -4.198 1.811 -0.701 0.678 C8 A1AA0 4 A1AA0 C10 C5 C 0 1 Y N N N N N 18.440 11.979 -5.038 3.223 -0.561 0.294 C10 A1AA0 5 A1AA0 C13 C6 C 0 1 Y N N N N N 21.414 13.023 -6.877 6.718 -1.465 -0.057 C13 A1AA0 6 A1AA0 C15 C7 C 0 1 Y N N N N N 22.251 12.278 -7.676 7.712 -0.707 -0.634 C15 A1AA0 7 A1AA0 C20 C8 C 0 1 Y N N N N N 20.031 11.137 -6.391 5.118 0.300 -0.541 C20 A1AA0 8 A1AA0 C22 C9 C 0 1 N N N N N N 14.312 13.691 -3.250 -1.400 -0.156 -0.373 C22 A1AA0 9 A1AA0 C26 C10 C 0 1 N N R N N N 13.255 12.658 -6.616 -4.980 -0.942 -0.442 C26 A1AA0 10 A1AA0 C28 C11 C 0 1 N N S N N N 12.457 14.093 -4.802 -3.230 -0.819 1.210 C28 A1AA0 11 A1AA0 C1 C12 C 0 1 N N N N N N 17.528 13.052 0.474 1.429 1.923 2.324 C1 A1AA0 12 A1AA0 C2 C13 C 0 1 N N N N N N 16.909 12.291 -0.678 -0.047 1.720 2.671 C2 A1AA0 13 A1AA0 C3 C14 C 0 1 N N N N N N 16.420 10.935 -0.209 -0.575 2.959 3.398 C3 A1AA0 14 A1AA0 N6 N1 N 0 1 N N N N N N 16.650 12.980 -3.635 0.909 0.215 0.274 N6 A1AA0 15 A1AA0 O9 O1 O 0 1 N N N N N N 16.711 10.753 -4.045 1.457 -1.644 1.360 O9 A1AA0 16 A1AA0 C11 C15 C 0 1 Y N N N N N 19.289 13.018 -5.332 4.195 -1.486 0.514 C11 A1AA0 17 A1AA0 C12 C16 C 0 1 Y N N N N N 20.302 12.503 -6.212 5.406 -0.970 -0.004 C12 A1AA0 18 A1AA0 C16 C17 C 0 1 Y N N N N N 21.955 10.944 -7.825 7.424 0.546 -1.163 C16 A1AA0 19 A1AA0 C18 C18 C 0 1 Y N N N N N 20.864 10.371 -7.202 6.137 1.046 -1.126 C18 A1AA0 20 A1AA0 N21 N2 N 0 1 Y N N N N N 18.895 10.832 -5.659 3.773 0.529 -0.354 N21 A1AA0 21 A1AA0 O23 O2 O 0 1 N N N N N N 14.008 14.696 -2.625 -1.038 0.021 -1.516 O23 A1AA0 22 A1AA0 N24 N3 N 0 1 N N N N N N 13.609 13.297 -4.334 -2.636 -0.631 -0.124 N24 A1AA0 23 A1AA0 C25 C19 C 0 1 N N N N N N 13.874 12.168 -5.236 -3.619 -1.049 -1.144 C25 A1AA0 24 A1AA0 C27 C20 C 0 1 N N N N N N 12.005 13.401 -6.096 -4.663 -1.359 1.004 C27 A1AA0 25 A1AA0 C29 C21 C 0 1 N N N N N N 11.367 14.217 -3.790 -2.416 -1.813 1.997 C29 A1AA0 26 A1AA0 N30 N4 N 0 1 N N N N N N 10.775 15.355 -3.599 -1.363 -2.328 1.483 N30 A1AA0 27 A1AA0 C31 C22 C 0 1 N N N N N N 12.903 11.488 -7.513 -6.011 -1.834 -1.069 C31 A1AA0 28 A1AA0 O32 O3 O 0 1 N N N N N N 12.212 10.534 -7.202 -5.940 -3.036 -1.213 O32 A1AA0 29 A1AA0 N33 N5 N 0 1 N N N N N N 13.491 11.687 -8.718 -7.032 -1.035 -1.440 N33 A1AA0 30 A1AA0 C34 C23 C 0 1 Y N N N N N 14.215 12.868 -8.750 -6.792 0.306 -1.129 C34 A1AA0 31 A1AA0 C35 C24 C 0 1 Y N N N N N 14.124 13.501 -7.519 -5.549 0.443 -0.515 C35 A1AA0 32 A1AA0 C36 C25 C 0 1 Y N N N N N 14.767 14.712 -7.322 -5.096 1.681 -0.120 C36 A1AA0 33 A1AA0 C37 C26 C 0 1 Y N N N N N 15.501 15.270 -8.357 -5.878 2.804 -0.327 C37 A1AA0 34 A1AA0 C38 C27 C 0 1 Y N N N N N 15.593 14.628 -9.582 -7.114 2.680 -0.934 C38 A1AA0 35 A1AA0 C39 C28 C 0 1 Y N N N N N 14.949 13.418 -9.793 -7.571 1.441 -1.335 C39 A1AA0 36 A1AA0 F14 F1 F 0 1 N N N N N N 21.686 14.340 -6.720 7.005 -2.682 0.455 F14 A1AA0 37 A1AA0 F17 F2 F 0 1 N N N N N N 22.741 10.159 -8.602 8.410 1.278 -1.725 F17 A1AA0 38 A1AA0 F19 F3 F 0 1 N N N N N N 20.609 9.062 -7.378 5.870 2.266 -1.644 F19 A1AA0 39 A1AA0 H4B H1 H 0 1 N N N N N N 14.864 12.905 -0.715 -0.623 2.301 0.678 H4B A1AA0 40 A1AA0 H4A H2 H 0 1 N N N N N N 16.042 14.169 -1.209 -1.913 1.510 1.615 H4A A1AA0 41 A1AA0 H5 H3 H 0 1 N N N N N N 15.145 11.762 -2.836 -0.548 -0.626 1.527 H5 A1AA0 42 A1AA0 H7A H4 H 0 1 N N N N N N 18.065 14.303 -4.447 1.763 2.092 -0.108 H7A A1AA0 43 A1AA0 H7B H5 H 0 1 N N N N N N 16.426 14.992 -4.195 2.023 0.871 -1.377 H7B A1AA0 44 A1AA0 H7C H6 H 0 1 N N N N N N 17.505 14.702 -2.788 0.426 1.635 -1.192 H7C A1AA0 45 A1AA0 H15 H7 H 0 1 N N N N N N 23.105 12.723 -8.165 8.722 -1.088 -0.676 H15 A1AA0 46 A1AA0 H28 H8 H 0 1 N N N N N N 12.808 15.102 -5.062 -3.263 0.134 1.738 H28 A1AA0 47 A1AA0 H1B H9 H 0 1 N N N N N N 17.878 14.033 0.120 1.995 2.108 3.237 H1B A1AA0 48 A1AA0 H1A H10 H 0 1 N N N N N N 16.777 13.194 1.265 1.814 1.028 1.834 H1A A1AA0 49 A1AA0 H1C H11 H 0 1 N N N N N N 18.379 12.482 0.875 1.531 2.777 1.654 H1C A1AA0 50 A1AA0 H2 H12 H 0 1 N N N N N N 17.681 12.135 -1.446 -0.152 0.848 3.316 H2 A1AA0 51 A1AA0 H3B H13 H 0 1 N N N N N N 15.973 10.393 -1.055 -0.470 3.831 2.752 H3B A1AA0 52 A1AA0 H3C H14 H 0 1 N N N N N N 17.267 10.358 0.190 -1.627 2.814 3.645 H3C A1AA0 53 A1AA0 H3A H15 H 0 1 N N N N N N 15.665 11.070 0.580 -0.005 3.114 4.313 H3A A1AA0 54 A1AA0 H11 H16 H 0 1 N N N N N N 19.210 14.032 -4.970 4.066 -2.443 0.997 H11 A1AA0 55 A1AA0 H21 H17 H 0 1 N N N N N N 18.473 9.928 -5.591 3.293 1.327 -0.626 H21 A1AA0 56 A1AA0 H25A H18 H 0 0 N N N N N N 14.954 11.983 -5.331 -3.432 -2.077 -1.454 H25A A1AA0 57 A1AA0 H25B H19 H 0 0 N N N N N N 13.375 11.254 -4.882 -3.582 -0.380 -2.003 H25B A1AA0 58 A1AA0 H27A H20 H 0 0 N N N N N N 11.664 14.144 -6.832 -5.357 -0.890 1.702 H27A A1AA0 59 A1AA0 H27B H21 H 0 0 N N N N N N 11.192 12.690 -5.889 -4.686 -2.444 1.107 H27B A1AA0 60 A1AA0 H29 H22 H 0 1 N Y N N N N 11.069 13.354 -3.213 -2.721 -2.091 2.995 H29 A1AA0 61 A1AA0 H30 H23 H 0 1 N N N N N N 10.067 15.296 -2.895 -0.839 -2.968 1.990 H30 A1AA0 62 A1AA0 H33 H24 H 0 1 N N N N N N 13.412 11.057 -9.491 -7.840 -1.354 -1.873 H33 A1AA0 63 A1AA0 H36 H25 H 0 1 N N N N N N 14.697 15.217 -6.370 -4.130 1.777 0.354 H36 A1AA0 64 A1AA0 H37 H26 H 0 1 N N N N N N 16.006 16.213 -8.208 -5.523 3.776 -0.016 H37 A1AA0 65 A1AA0 H38 H27 H 0 1 N N N N N N 16.171 15.074 -10.378 -7.724 3.556 -1.096 H38 A1AA0 66 A1AA0 H39 H28 H 0 1 N N N N N N 15.017 12.915 -10.746 -8.537 1.352 -1.809 H39 A1AA0 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AA0 C1 C2 SING N N 1 A1AA0 C2 C3 SING N N 2 A1AA0 C2 C4 SING N N 3 A1AA0 C4 C5 SING N N 4 A1AA0 C5 N6 SING N N 5 A1AA0 N6 C7 SING N N 6 A1AA0 N6 C8 SING N N 7 A1AA0 C8 O9 DOUB N N 8 A1AA0 C8 C10 SING N N 9 A1AA0 C10 C11 DOUB Y N 10 A1AA0 C11 C12 SING Y N 11 A1AA0 C12 C13 DOUB Y N 12 A1AA0 C13 F14 SING N N 13 A1AA0 C13 C15 SING Y N 14 A1AA0 C15 C16 DOUB Y N 15 A1AA0 C16 F17 SING N N 16 A1AA0 C16 C18 SING Y N 17 A1AA0 C18 F19 SING N N 18 A1AA0 C18 C20 DOUB Y N 19 A1AA0 C20 N21 SING Y N 20 A1AA0 C5 C22 SING N N 21 A1AA0 C22 O23 DOUB N N 22 A1AA0 C22 N24 SING N N 23 A1AA0 N24 C25 SING N N 24 A1AA0 C25 C26 SING N N 25 A1AA0 C26 C27 SING N N 26 A1AA0 C27 C28 SING N N 27 A1AA0 C28 C29 SING N N 28 A1AA0 C29 N30 DOUB N N 29 A1AA0 C26 C31 SING N N 30 A1AA0 C31 O32 DOUB N N 31 A1AA0 C31 N33 SING N N 32 A1AA0 N33 C34 SING N N 33 A1AA0 C34 C35 DOUB Y N 34 A1AA0 C35 C36 SING Y N 35 A1AA0 C36 C37 DOUB Y N 36 A1AA0 C37 C38 SING Y N 37 A1AA0 C38 C39 DOUB Y N 38 A1AA0 N21 C10 SING Y N 39 A1AA0 C28 N24 SING N N 40 A1AA0 C39 C34 SING Y N 41 A1AA0 C20 C12 SING Y N 42 A1AA0 C35 C26 SING N N 43 A1AA0 C4 H4B SING N N 44 A1AA0 C4 H4A SING N N 45 A1AA0 C5 H5 SING N N 46 A1AA0 C7 H7A SING N N 47 A1AA0 C7 H7B SING N N 48 A1AA0 C7 H7C SING N N 49 A1AA0 C15 H15 SING N N 50 A1AA0 C28 H28 SING N N 51 A1AA0 C1 H1B SING N N 52 A1AA0 C1 H1A SING N N 53 A1AA0 C1 H1C SING N N 54 A1AA0 C2 H2 SING N N 55 A1AA0 C3 H3B SING N N 56 A1AA0 C3 H3C SING N N 57 A1AA0 C3 H3A SING N N 58 A1AA0 C11 H11 SING N N 59 A1AA0 N21 H21 SING N N 60 A1AA0 C25 H25A SING N N 61 A1AA0 C25 H25B SING N N 62 A1AA0 C27 H27A SING N N 63 A1AA0 C27 H27B SING N N 64 A1AA0 C29 H29 SING N N 65 A1AA0 N30 H30 SING N N 66 A1AA0 N33 H33 SING N N 67 A1AA0 C36 H36 SING N N 68 A1AA0 C37 H37 SING N N 69 A1AA0 C38 H38 SING N N 70 A1AA0 C39 H39 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AA0 SMILES ACDLabs 12.01 "Fc1cc(F)c(F)c2[NH]c(cc12)C(=O)N(C)C(CC(C)C)C(=O)N1CC2(CC1C=N)c1ccccc1NC2=O" A1AA0 InChI InChI 1.06 "InChI=1S/C28H28F3N5O3/c1-14(2)8-22(35(3)25(37)21-9-16-18(29)10-19(30)23(31)24(16)33-21)26(38)36-13-28(11-15(36)12-32)17-6-4-5-7-20(17)34-27(28)39/h4-7,9-10,12,14-15,22,32-33H,8,11,13H2,1-3H3,(H,34,39)/b32-12+/t15-,22+,28+/m1/s1" A1AA0 InChIKey InChI 1.06 HTIJRVKDMBVLCG-RAAJOXOESA-N A1AA0 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N(C)C(=O)c1[nH]c2c(F)c(F)cc(F)c2c1)C(=O)N3C[C@]4(C[C@H]3C=N)C(=O)Nc5ccccc45" A1AA0 SMILES CACTVS 3.385 "CC(C)C[CH](N(C)C(=O)c1[nH]c2c(F)c(F)cc(F)c2c1)C(=O)N3C[C]4(C[CH]3C=N)C(=O)Nc5ccccc45" A1AA0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C/[C@@H]1C[C@]2(CN1C(=O)[C@H](CC(C)C)N(C)C(=O)c3cc4c(cc(c(c4[nH]3)F)F)F)c5ccccc5NC2=O" A1AA0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)N1CC2(CC1C=N)c3ccccc3NC2=O)N(C)C(=O)c4cc5c(cc(c(c5[nH]4)F)F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AA0 "SYSTEMATIC NAME" ACDLabs 12.01 "4,6,7-trifluoro-N-{(2S)-1-[(3R,5'R)-5'-(iminomethyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidin]-1'-yl]-4-methyl-1-oxopentan-2-yl}-N-methyl-1H-indole-2-carboxamide" A1AA0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4,6,7-tris(fluoranyl)-~{N}-[(2~{S})-1-[(2'~{S},3~{R})-2'-(iminomethyl)-2-oxidanylidene-spiro[1~{H}-indole-3,4'-pyrrolidine]-1'-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-~{N}-methyl-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AA0 "Create component" 2024-01-03 RCSB A1AA0 "Initial release" 2024-08-14 RCSB A1AA0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1AA0 _pdbx_chem_comp_synonyms.name EDP-235 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type "company code name" # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AA0 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C29 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.first_instance_model_db_code 8VDJ #