data_A1AAF # _chem_comp.id A1AAF _chem_comp.name "methyl (1S,2R,3S,4R,5R)-4-{2-[(5-chlorothiophen-2-yl)ethynyl]-6-(methylamino)-9H-purin-9-yl}-2,3-dihydroxybicyclo[3.1.0]hexane-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H18 Cl N5 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-12-13 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.906 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AAF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8VBY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AAF C1 C1 C 0 1 N N N N N N 77.227 88.561 98.328 1.772 5.452 -0.132 C1 A1AAF 1 A1AAF O1 O1 O 0 1 N N N N N N 83.780 94.427 94.940 -2.900 -0.829 2.655 O1 A1AAF 2 A1AAF C2 C2 C 0 1 Y N N N N N 79.097 90.093 97.917 0.385 3.415 -0.009 C2 A1AAF 3 A1AAF C13 C3 C 0 1 N N R N N N 82.570 93.262 96.743 -2.744 -0.352 0.256 C13 A1AAF 4 A1AAF C3 C4 C 0 1 Y N N N N N 79.647 91.238 97.312 -0.863 2.770 0.070 C3 A1AAF 5 A1AAF C4 C5 C 0 1 Y N N N N N 80.089 93.042 96.250 -2.942 2.163 0.185 C4 A1AAF 6 A1AAF C5 C6 C 0 1 Y N N N N N 80.996 91.472 97.507 -0.888 1.364 0.115 C5 A1AAF 7 A1AAF C6 C7 C 0 1 Y N N N N N 81.222 89.658 98.747 1.416 1.342 0.008 C6 A1AAF 8 A1AAF C7 C8 C 0 1 N N N N N N 82.029 88.782 99.527 2.631 0.585 -0.024 C7 A1AAF 9 A1AAF C8 C9 C 0 1 N N N N N N 82.702 88.035 100.184 3.628 -0.036 -0.051 C8 A1AAF 10 A1AAF C9 C10 C 0 1 Y N N N N N 83.488 87.143 100.968 4.843 -0.793 -0.083 C9 A1AAF 11 A1AAF C10 C11 C 0 1 Y N N N N N 84.843 87.270 101.188 4.926 -2.155 -0.044 C10 A1AAF 12 A1AAF C11 C12 C 0 1 Y N N N N N 85.356 86.223 102.012 6.209 -2.648 -0.088 C11 A1AAF 13 A1AAF C12 C13 C 0 1 Y N N N N N 84.362 85.355 102.375 7.174 -1.721 -0.162 C12 A1AAF 14 A1AAF C14 C14 C 0 1 N N S N N N 83.034 93.897 98.032 -3.670 -0.631 -0.946 C14 A1AAF 15 A1AAF C15 C15 C 0 1 N N N N N N 84.288 94.730 98.112 -3.830 -2.079 -1.415 C15 A1AAF 16 A1AAF C16 C16 C 0 1 N N S N N N 82.936 95.398 97.919 -4.831 -1.492 -0.417 C16 A1AAF 17 A1AAF C17 C17 C 0 1 N N R N N N 82.442 95.714 96.525 -4.569 -1.706 1.089 C17 A1AAF 18 A1AAF C18 C18 C 0 1 N N S N N N 82.556 94.405 95.702 -3.665 -0.514 1.490 C18 A1AAF 19 A1AAF C19 C19 C 0 1 N N N N N N 82.324 96.145 99.045 -6.252 -1.246 -0.855 C19 A1AAF 20 A1AAF C20 C20 C 0 1 N N N N N N 82.956 96.701 101.217 -8.587 -1.719 -0.841 C20 A1AAF 21 A1AAF N1 N1 N 0 1 Y N N N N N 79.093 92.226 96.526 -2.149 3.193 0.116 N1 A1AAF 22 A1AAF N2 N2 N 0 1 N N N N N N 77.764 89.776 97.781 0.465 4.796 -0.051 N2 A1AAF 23 A1AAF N3 N3 N 0 1 Y N N N N N 81.261 92.630 96.819 -2.212 1.011 0.188 N3 A1AAF 24 A1AAF N4 N4 N 0 1 Y N N N N N 81.857 90.725 98.215 0.257 0.695 0.083 N4 A1AAF 25 A1AAF N5 N5 N 0 1 Y N N N N N 79.926 89.304 98.644 1.484 2.672 -0.037 N5 A1AAF 26 A1AAF O2 O2 O 0 1 N N N N N N 83.227 96.744 95.945 -3.891 -2.944 1.307 O2 A1AAF 27 A1AAF O3 O3 O 0 1 N N N N N N 81.113 96.163 99.206 -6.498 -0.358 -1.637 O3 A1AAF 28 A1AAF O4 O4 O 0 1 N N N N N N 83.252 96.753 99.822 -7.244 -2.013 -0.376 O4 A1AAF 29 A1AAF S1 S1 S 0 1 Y N N N N N 82.845 85.766 101.753 6.462 -0.114 -0.187 S1 A1AAF 30 A1AAF CL1 CL1 CL 0 0 N N N N N N 84.527 83.959 103.358 8.876 -2.058 -0.229 CL1 A1AAF 31 A1AAF H1 H1 H 0 1 N N N N N N 76.151 88.504 98.108 1.636 6.533 -0.155 H1 A1AAF 32 A1AAF H3 H2 H 0 1 N N N N N N 77.740 87.698 97.878 2.371 5.179 0.737 H3 A1AAF 33 A1AAF H2 H3 H 0 1 N N N N N N 77.380 88.550 99.417 2.284 5.131 -1.040 H2 A1AAF 34 A1AAF H14 H4 H 0 1 N N N N N N 83.748 95.136 94.309 -3.431 -0.941 3.456 H14 A1AAF 35 A1AAF H8 H5 H 0 1 N N N N N N 83.317 92.519 96.428 -1.932 -1.078 0.288 H8 A1AAF 36 A1AAF H5 H6 H 0 1 N N N N N N 79.991 93.932 95.645 -4.020 2.214 0.234 H5 A1AAF 37 A1AAF H6 H7 H 0 1 N N N N N N 85.447 88.069 100.784 4.056 -2.793 0.017 H6 A1AAF 38 A1AAF H7 H8 H 0 1 N N N N N N 86.390 86.129 102.309 6.424 -3.706 -0.064 H7 A1AAF 39 A1AAF H9 H9 H 0 1 N N N N N N 82.676 93.443 98.968 -3.844 0.187 -1.646 H9 A1AAF 40 A1AAF H10 H10 H 0 1 N N N N N N 84.821 94.832 99.069 -4.176 -2.241 -2.436 H10 A1AAF 41 A1AAF H11 H11 H 0 1 N N N N N N 85.015 94.711 97.287 -3.116 -2.811 -1.039 H11 A1AAF 42 A1AAF H12 H12 H 0 1 N N N N N N 81.384 96.012 96.573 -5.506 -1.681 1.645 H12 A1AAF 43 A1AAF H13 H13 H 0 1 N N N N N N 81.679 94.301 95.046 -4.260 0.386 1.649 H13 A1AAF 44 A1AAF H18 H14 H 0 1 N N N N N N 83.750 97.213 101.780 -9.291 -2.411 -0.378 H18 A1AAF 45 A1AAF H16 H15 H 0 1 N N N N N N 81.994 97.199 101.406 -8.850 -0.697 -0.570 H16 A1AAF 46 A1AAF H17 H16 H 0 1 N N N N N N 82.896 95.651 101.540 -8.629 -1.829 -1.925 H17 A1AAF 47 A1AAF H4 H17 H 0 1 N N N N N N 77.578 89.751 96.799 -0.345 5.329 -0.025 H4 A1AAF 48 A1AAF H15 H18 H 0 1 N N N N N N 82.907 96.933 95.071 -3.701 -3.130 2.237 H15 A1AAF 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AAF N1 C3 SING Y N 1 A1AAF N1 C4 DOUB Y N 2 A1AAF C1 N2 SING N N 3 A1AAF N2 C2 SING N N 4 A1AAF C2 C3 DOUB Y N 5 A1AAF C2 N5 SING Y N 6 A1AAF C3 C5 SING Y N 7 A1AAF C4 N3 SING Y N 8 A1AAF N3 C13 SING N N 9 A1AAF N3 C5 SING Y N 10 A1AAF C5 N4 DOUB Y N 11 A1AAF N4 C6 SING Y N 12 A1AAF C6 C7 SING N N 13 A1AAF C6 N5 DOUB Y N 14 A1AAF C7 C8 TRIP N N 15 A1AAF C8 C9 SING N N 16 A1AAF C9 C10 DOUB Y N 17 A1AAF C9 S1 SING Y N 18 A1AAF C10 C11 SING Y N 19 A1AAF C11 C12 DOUB Y N 20 A1AAF C12 CL1 SING N N 21 A1AAF C12 S1 SING Y N 22 A1AAF C13 C14 SING N N 23 A1AAF C13 C18 SING N N 24 A1AAF C14 C16 SING N N 25 A1AAF C14 C15 SING N N 26 A1AAF C15 C16 SING N N 27 A1AAF C16 C19 SING N N 28 A1AAF C16 C17 SING N N 29 A1AAF C17 O2 SING N N 30 A1AAF C17 C18 SING N N 31 A1AAF C18 O1 SING N N 32 A1AAF C19 O3 DOUB N N 33 A1AAF C19 O4 SING N N 34 A1AAF O4 C20 SING N N 35 A1AAF C1 H1 SING N N 36 A1AAF C1 H3 SING N N 37 A1AAF C1 H2 SING N N 38 A1AAF O1 H14 SING N N 39 A1AAF C13 H8 SING N N 40 A1AAF C4 H5 SING N N 41 A1AAF C10 H6 SING N N 42 A1AAF C11 H7 SING N N 43 A1AAF C14 H9 SING N N 44 A1AAF C15 H10 SING N N 45 A1AAF C15 H11 SING N N 46 A1AAF C17 H12 SING N N 47 A1AAF C18 H13 SING N N 48 A1AAF C20 H18 SING N N 49 A1AAF C20 H16 SING N N 50 A1AAF C20 H17 SING N N 51 A1AAF N2 H4 SING N N 52 A1AAF O2 H15 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AAF SMILES ACDLabs 12.01 "Clc1ccc(C#Cc2nc(NC)c3ncn(C4C5CC5(C(=O)OC)C(O)C4O)c3n2)s1" A1AAF InChI InChI 1.06 "InChI=1S/C20H18ClN5O4S/c1-22-17-13-18(25-12(24-17)6-4-9-3-5-11(21)31-9)26(8-23-13)14-10-7-20(10,19(29)30-2)16(28)15(14)27/h3,5,8,10,14-16,27-28H,7H2,1-2H3,(H,22,24,25)/t10?,14?,15?,16?,20-/m0/s1" A1AAF InChIKey InChI 1.06 OXHKHNQYCDYUIU-LJARFEBYSA-N A1AAF SMILES_CANONICAL CACTVS 3.385 "CNc1nc(nc2n(cnc12)[C@H]3[C@H](O)[C@H](O)[C@@]4(C[C@H]34)C(=O)OC)C#Cc5sc(Cl)cc5" A1AAF SMILES CACTVS 3.385 "CNc1nc(nc2n(cnc12)[CH]3[CH](O)[CH](O)[C]4(C[CH]34)C(=O)OC)C#Cc5sc(Cl)cc5" A1AAF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)C#Cc3ccc(s3)Cl)n(cn2)[C@@H]4[C@H]5C[C@]5([C@H]([C@H]4O)O)C(=O)OC" A1AAF SMILES "OpenEye OEToolkits" 2.0.7 "CNc1c2c(nc(n1)C#Cc3ccc(s3)Cl)n(cn2)C4C5CC5(C(C4O)O)C(=O)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AAF "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (1S,2R,3S,4R,5R)-4-{2-[(5-chlorothiophen-2-yl)ethynyl]-6-(methylamino)-9H-purin-9-yl}-2,3-dihydroxybicyclo[3.1.0]hexane-1-carboxylate" A1AAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl (1~{S},2~{R},3~{S},4~{R},5~{S})-4-[2-[2-(5-chloranylthiophen-2-yl)ethynyl]-6-(methylamino)purin-9-yl]-2,3-bis(oxidanyl)bicyclo[3.1.0]hexane-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AAF "Create component" 2023-12-13 RCSB A1AAF "Initial release" 2024-08-07 RCSB #