data_A1ABG # _chem_comp.id A1ABG _chem_comp.name "N-benzyl-N'-methyl-N-[(pyridin-3-yl)methyl]thiourea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H17 N3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-04 _chem_comp.pdbx_modified_date 2024-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 271.381 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ABG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GT0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ABG C10 C1 C 0 1 Y N N N N N -52.820 25.040 -6.851 4.674 1.341 0.601 C10 A1ABG 1 A1ABG C13 C2 C 0 1 N N N N N N -53.611 30.532 -6.411 -0.821 0.580 1.019 C13 A1ABG 2 A1ABG C15 C3 C 0 1 Y N N N N N -52.526 32.653 -7.487 -3.211 -0.114 0.682 C15 A1ABG 3 A1ABG C17 C4 C 0 1 Y N N N N N -53.929 34.310 -8.676 -4.668 1.298 -0.576 C17 A1ABG 4 A1ABG C01 C5 C 0 1 N N N N N N -56.120 31.991 -3.046 -0.716 -3.639 0.981 C01 A1ABG 5 A1ABG C03 C6 C 0 1 N N N N N N -55.791 30.362 -4.971 -0.005 -1.502 0.051 C03 A1ABG 6 A1ABG C06 C7 C 0 1 N N N N N N -55.389 28.677 -6.994 0.771 0.576 -0.957 C06 A1ABG 7 A1ABG C07 C8 C 0 1 Y N N N N N -54.492 27.372 -6.970 2.148 0.846 -0.407 C07 A1ABG 8 A1ABG C08 C9 C 0 1 Y N N N N N -54.706 26.290 -7.850 2.397 2.013 0.291 C08 A1ABG 9 A1ABG C09 C10 C 0 1 Y N N N N N -53.878 25.129 -7.784 3.658 2.258 0.800 C09 A1ABG 10 A1ABG C11 C11 C 0 1 Y N N N N N -52.600 26.143 -5.968 4.428 0.180 -0.107 C11 A1ABG 11 A1ABG C12 C12 C 0 1 Y N N N N N -53.420 27.271 -6.031 3.165 -0.068 -0.611 C12 A1ABG 12 A1ABG C14 C13 C 0 1 Y N N N N N -53.693 31.880 -7.215 -2.203 0.812 0.465 C14 A1ABG 13 A1ABG C16 C14 C 0 1 Y N N N N N -52.649 33.880 -8.227 -4.466 0.139 0.149 C16 A1ABG 14 A1ABG C19 C15 C 0 1 Y N N N N N -54.938 32.369 -7.692 -2.480 1.952 -0.267 C19 A1ABG 15 A1ABG N02 N1 N 0 1 N N N N N N -55.310 31.440 -4.189 -0.730 -2.174 0.967 N02 A1ABG 16 A1ABG N05 N2 N 0 1 N N N N N N -54.953 29.875 -6.062 -0.018 -0.154 0.038 N05 A1ABG 17 A1ABG N18 N3 N 0 1 Y N N N N N -55.038 33.546 -8.395 -3.688 2.162 -0.754 N18 A1ABG 18 A1ABG S04 S1 S 0 1 N N N N N N -57.260 29.683 -4.609 0.933 -2.360 -1.095 S04 A1ABG 19 A1ABG H101 H1 H 0 0 N N N N N N -52.194 24.161 -6.806 5.661 1.535 0.995 H101 A1ABG 20 A1ABG H132 H2 H 0 0 N N N N N N -53.032 29.816 -7.013 -0.348 1.539 1.231 H132 A1ABG 21 A1ABG H131 H3 H 0 0 N N N N N N -53.080 30.734 -5.469 -0.891 -0.001 1.939 H131 A1ABG 22 A1ABG H151 H4 H 0 0 N N N N N N -51.559 32.320 -7.141 -3.023 -1.013 1.249 H151 A1ABG 23 A1ABG H171 H5 H 0 0 N N N N N N -54.029 35.230 -9.233 -5.643 1.505 -0.991 H171 A1ABG 24 A1ABG H012 H6 H 0 0 N N N N N N -55.571 32.818 -2.572 -1.084 -4.015 0.026 H012 A1ABG 25 A1ABG H013 H7 H 0 0 N N N N N N -57.084 32.360 -3.425 0.303 -3.991 1.143 H013 A1ABG 26 A1ABG H011 H8 H 0 0 N N N N N N -56.297 31.197 -2.306 -1.357 -4.001 1.785 H011 A1ABG 27 A1ABG H062 H9 H 0 0 N N N N N N -55.400 29.051 -8.028 0.280 1.522 -1.187 H062 A1ABG 28 A1ABG H061 H10 H 0 0 N N N N N N -56.407 28.383 -6.699 0.853 -0.021 -1.865 H061 A1ABG 29 A1ABG H081 H11 H 0 0 N N N N N N -55.502 26.341 -8.579 1.603 2.729 0.447 H081 A1ABG 30 A1ABG H091 H12 H 0 0 N N N N N N -54.063 24.305 -8.458 3.851 3.165 1.353 H091 A1ABG 31 A1ABG H111 H13 H 0 0 N N N N N N -51.795 26.103 -5.249 5.222 -0.534 -0.266 H111 A1ABG 32 A1ABG H121 H14 H 0 0 N N N N N N -53.239 28.090 -5.351 2.970 -0.979 -1.157 H121 A1ABG 33 A1ABG H161 H15 H 0 0 N N N N N N -51.772 34.473 -8.441 -5.275 -0.561 0.298 H161 A1ABG 34 A1ABG H191 H16 H 0 0 N N N N N N -55.834 31.799 -7.496 -1.700 2.678 -0.440 H191 A1ABG 35 A1ABG H021 H17 H 0 0 N N N N N N -54.419 31.841 -4.399 -1.262 -1.688 1.616 H021 A1ABG 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ABG C17 N18 DOUB Y N 1 A1ABG C17 C16 SING Y N 2 A1ABG N18 C19 SING Y N 3 A1ABG C16 C15 DOUB Y N 4 A1ABG C08 C09 DOUB Y N 5 A1ABG C08 C07 SING Y N 6 A1ABG C09 C10 SING Y N 7 A1ABG C19 C14 DOUB Y N 8 A1ABG C15 C14 SING Y N 9 A1ABG C14 C13 SING N N 10 A1ABG C06 C07 SING N N 11 A1ABG C06 N05 SING N N 12 A1ABG C07 C12 DOUB Y N 13 A1ABG C10 C11 DOUB Y N 14 A1ABG C13 N05 SING N N 15 A1ABG N05 C03 SING N N 16 A1ABG C12 C11 SING Y N 17 A1ABG C03 S04 DOUB N N 18 A1ABG C03 N02 SING N N 19 A1ABG N02 C01 SING N N 20 A1ABG C10 H101 SING N N 21 A1ABG C13 H132 SING N N 22 A1ABG C13 H131 SING N N 23 A1ABG C15 H151 SING N N 24 A1ABG C17 H171 SING N N 25 A1ABG C01 H012 SING N N 26 A1ABG C01 H013 SING N N 27 A1ABG C01 H011 SING N N 28 A1ABG C06 H062 SING N N 29 A1ABG C06 H061 SING N N 30 A1ABG C08 H081 SING N N 31 A1ABG C09 H091 SING N N 32 A1ABG C11 H111 SING N N 33 A1ABG C12 H121 SING N N 34 A1ABG C16 H161 SING N N 35 A1ABG C19 H191 SING N N 36 A1ABG N02 H021 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ABG SMILES ACDLabs 12.01 "CNC(=S)N(Cc1ccccc1)Cc1cccnc1" A1ABG InChI InChI 1.06 "InChI=1S/C15H17N3S/c1-16-15(19)18(11-13-6-3-2-4-7-13)12-14-8-5-9-17-10-14/h2-10H,11-12H2,1H3,(H,16,19)" A1ABG InChIKey InChI 1.06 DSMRJWBOXYJVMG-UHFFFAOYSA-N A1ABG SMILES_CANONICAL CACTVS 3.385 "CNC(=S)N(Cc1ccccc1)Cc2cccnc2" A1ABG SMILES CACTVS 3.385 "CNC(=S)N(Cc1ccccc1)Cc2cccnc2" A1ABG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=S)N(Cc1ccccc1)Cc2cccnc2" A1ABG SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=S)N(Cc1ccccc1)Cc2cccnc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ABG "SYSTEMATIC NAME" ACDLabs 12.01 "N-benzyl-N'-methyl-N-[(pyridin-3-yl)methyl]thiourea" A1ABG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-methyl-1-(phenylmethyl)-1-(pyridin-3-ylmethyl)thiourea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ABG "Create component" 2024-01-04 RCSB A1ABG "Initial release" 2024-01-24 RCSB #