data_A1ACB # _chem_comp.id A1ACB _chem_comp.name "5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 Cl N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-09 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.771 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ACB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GXA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ACB C2 C1 C 0 1 Y N N N N N 27.403 -10.430 11.983 3.823 0.112 -0.232 C2 A1ACB 1 A1ACB N1 N1 N 0 1 N N N N N N 26.361 -10.630 15.523 0.601 1.831 0.069 N1 A1ACB 2 A1ACB C1 C2 C 0 1 Y N N N N N 25.441 -9.263 12.385 2.126 -1.402 0.153 C1 A1ACB 3 A1ACB C3 C3 C 0 1 Y N N N N N 27.483 -10.724 13.346 2.903 1.143 -0.197 C3 A1ACB 4 A1ACB C4 C4 C 0 1 Y N N N N N 26.454 -10.245 14.222 1.559 0.829 0.025 C4 A1ACB 5 A1ACB C5 C5 C 0 1 Y N N N N N 25.420 -10.207 16.503 -0.755 1.498 0.170 C5 A1ACB 6 A1ACB N2 N2 N 0 1 N N N N N N 22.238 -9.699 19.213 -4.740 0.306 0.332 N2 A1ACB 7 A1ACB C6 C6 C 0 1 Y N N N N N 24.770 -8.949 16.541 -1.621 2.313 0.887 C6 A1ACB 8 A1ACB N3 N3 N 0 1 Y N N N N N 25.421 -9.527 13.700 1.213 -0.443 0.194 N3 A1ACB 9 A1ACB C7 C7 C 0 1 Y N N N N N 23.729 -8.673 17.441 -2.958 1.987 0.988 C7 A1ACB 10 A1ACB C8 C8 C 0 1 Y N N N N N 23.303 -9.708 18.286 -3.449 0.838 0.372 C8 A1ACB 11 A1ACB C9 C9 C 0 1 N N N N N N 22.127 -10.958 19.836 -4.798 -0.834 -0.378 C9 A1ACB 12 A1ACB O O1 O 0 1 N N N N N N 21.257 -11.214 20.649 -5.786 -1.508 -0.578 O A1ACB 13 A1ACB C10 C10 C 0 1 N N N N N N 23.236 -11.877 19.277 -3.399 -1.117 -0.881 C10 A1ACB 14 A1ACB C11 C11 C 0 1 Y N N N N N 23.912 -11.004 18.253 -2.574 0.029 -0.343 C11 A1ACB 15 A1ACB C12 C12 C 0 1 Y N N N N N 24.953 -11.283 17.370 -1.242 0.354 -0.452 C12 A1ACB 16 A1ACB CL CL1 CL 0 0 N N N N N N 28.779 -11.578 13.923 3.405 2.789 -0.423 CL A1ACB 17 A1ACB N N4 N 0 1 Y N N N N N 26.377 -9.686 11.476 3.407 -1.134 -0.061 N A1ACB 18 A1ACB S S1 S 0 1 N N N N N N 24.157 -8.261 11.730 1.625 -3.076 0.381 S A1ACB 19 A1ACB C C13 C 0 1 N N N N N N 23.082 -7.812 13.105 3.226 -3.906 0.230 C A1ACB 20 A1ACB H1 H1 H 0 1 N N N N N N 28.169 -10.799 11.317 4.869 0.320 -0.401 H1 A1ACB 21 A1ACB H2 H2 H 0 1 N N N N N N 27.041 -11.296 15.830 0.870 2.762 0.029 H2 A1ACB 22 A1ACB H3 H3 H 0 1 N N N N N N 21.648 -8.913 19.400 -5.507 0.712 0.766 H3 A1ACB 23 A1ACB H4 H4 H 0 1 N N N N N N 25.086 -8.177 15.855 -1.247 3.204 1.367 H4 A1ACB 24 A1ACB H5 H5 H 0 1 N N N N N N 23.271 -7.696 17.481 -3.626 2.625 1.548 H5 A1ACB 25 A1ACB H6 H6 H 0 1 N N N N N N 22.807 -12.776 18.810 -3.036 -2.066 -0.486 H6 A1ACB 26 A1ACB H7 H7 H 0 1 N N N N N N 23.939 -12.175 20.069 -3.380 -1.126 -1.971 H7 A1ACB 27 A1ACB H8 H8 H 0 1 N N N N N N 25.400 -12.265 17.329 -0.574 -0.282 -1.015 H8 A1ACB 28 A1ACB H9 H9 H 0 1 N N N N N N 22.260 -7.181 12.737 3.902 -3.537 1.002 H9 A1ACB 29 A1ACB H10 H10 H 0 1 N N N N N N 22.669 -8.724 13.560 3.091 -4.981 0.350 H10 A1ACB 30 A1ACB H11 H11 H 0 1 N N N N N N 23.662 -7.257 13.857 3.651 -3.701 -0.753 H11 A1ACB 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ACB N C2 DOUB Y N 1 A1ACB N C1 SING Y N 2 A1ACB S C1 SING N N 3 A1ACB S C SING N N 4 A1ACB C2 C3 SING Y N 5 A1ACB C1 N3 DOUB Y N 6 A1ACB C3 CL SING N N 7 A1ACB C3 C4 DOUB Y N 8 A1ACB N3 C4 SING Y N 9 A1ACB C4 N1 SING N N 10 A1ACB N1 C5 SING N N 11 A1ACB C5 C6 DOUB Y N 12 A1ACB C5 C12 SING Y N 13 A1ACB C6 C7 SING Y N 14 A1ACB C12 C11 DOUB Y N 15 A1ACB C7 C8 DOUB Y N 16 A1ACB C11 C8 SING Y N 17 A1ACB C11 C10 SING N N 18 A1ACB C8 N2 SING N N 19 A1ACB N2 C9 SING N N 20 A1ACB C10 C9 SING N N 21 A1ACB C9 O DOUB N N 22 A1ACB C2 H1 SING N N 23 A1ACB N1 H2 SING N N 24 A1ACB N2 H3 SING N N 25 A1ACB C6 H4 SING N N 26 A1ACB C7 H5 SING N N 27 A1ACB C10 H6 SING N N 28 A1ACB C10 H7 SING N N 29 A1ACB C12 H8 SING N N 30 A1ACB C H9 SING N N 31 A1ACB C H10 SING N N 32 A1ACB C H11 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ACB SMILES ACDLabs 12.01 "Clc1cnc(SC)nc1Nc1cc2CC(=O)Nc2cc1" A1ACB InChI InChI 1.06 "InChI=1S/C13H11ClN4OS/c1-20-13-15-6-9(14)12(18-13)16-8-2-3-10-7(4-8)5-11(19)17-10/h2-4,6H,5H2,1H3,(H,17,19)(H,15,16,18)" A1ACB InChIKey InChI 1.06 WEMZFBNUWFOLKU-UHFFFAOYSA-N A1ACB SMILES_CANONICAL CACTVS 3.385 "CSc1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1" A1ACB SMILES CACTVS 3.385 "CSc1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1" A1ACB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CSc1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl" A1ACB SMILES "OpenEye OEToolkits" 2.0.7 "CSc1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ACB "SYSTEMATIC NAME" ACDLabs 12.01 "5-{[5-chloro-2-(methylsulfanyl)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" A1ACB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(5-chloranyl-2-methylsulfanyl-pyrimidin-4-yl)amino]-1,3-dihydroindol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ACB "Create component" 2024-01-09 RCSB A1ACB "Initial release" 2024-12-11 RCSB #