data_A1ACZ # _chem_comp.id A1ACZ _chem_comp.name 8-chloroadenosine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 Cl N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-17 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.686 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ACZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GYR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ACZ CL CL1 CL 0 0 N N N N N N 20.422 9.039 5.656 -0.556 2.325 0.942 CL A1ACZ 1 A1ACZ C4 C1 C 0 1 Y N N N N N 21.265 9.141 7.141 0.712 1.250 0.440 C4 A1ACZ 2 A1ACZ N2 N1 N 0 1 Y N N N N N 22.470 9.618 7.252 1.987 1.508 0.521 N2 A1ACZ 3 A1ACZ C3 C2 C 0 1 Y N N N N N 22.749 9.472 8.601 2.692 0.454 0.043 C3 A1ACZ 4 A1ACZ C C3 C 0 1 Y N N N N N 23.863 9.846 9.382 4.059 0.169 -0.115 C A1ACZ 5 A1ACZ N4 N2 N 0 1 N N N N N N 24.908 10.542 8.915 5.022 1.089 0.263 N4 A1ACZ 6 A1ACZ N3 N3 N 0 1 Y N N N N N 20.710 8.684 8.304 0.522 0.009 -0.091 N3 A1ACZ 7 A1ACZ C2 C4 C 0 1 Y N N N N N 21.689 8.881 9.264 1.761 -0.519 -0.358 C2 A1ACZ 8 A1ACZ N1 N4 N 0 1 Y N N N N N 21.623 8.600 10.573 2.203 -1.664 -0.869 N1 A1ACZ 9 A1ACZ C1 C5 C 0 1 Y N N N N N 22.746 8.955 11.202 3.494 -1.887 -0.998 C1 A1ACZ 10 A1ACZ N N5 N 0 1 Y N N N N N 23.832 9.552 10.700 4.406 -1.003 -0.636 N A1ACZ 11 A1ACZ C5 C6 C 0 1 N N R N N N 19.380 8.160 8.569 -0.768 -0.642 -0.335 C5 A1ACZ 12 A1ACZ O O1 O 0 1 N N N N N N 19.198 6.995 7.790 -1.710 0.303 -0.888 O A1ACZ 13 A1ACZ C8 C7 C 0 1 N N R N N N 17.809 6.861 7.413 -3.013 -0.262 -0.626 C8 A1ACZ 14 A1ACZ C9 C8 C 0 1 N N N N N N 17.708 6.670 5.916 -4.087 0.826 -0.685 C9 A1ACZ 15 A1ACZ O1 O2 O 0 1 N N N N N N 18.373 5.472 5.501 -4.194 1.317 -2.023 O1 A1ACZ 16 A1ACZ C7 C9 C 0 1 N N S N N N 17.089 8.075 8.011 -2.912 -0.841 0.803 C7 A1ACZ 17 A1ACZ O2 O3 O 0 1 N N N N N N 16.539 7.699 9.273 -3.644 -2.065 0.900 O2 A1ACZ 18 A1ACZ C6 C10 C 0 1 N N R N N N 18.225 9.087 8.200 -1.400 -1.099 0.998 C6 A1ACZ 19 A1ACZ O3 O4 O 0 1 N N N N N N 17.997 10.019 9.250 -1.154 -2.489 1.222 O3 A1ACZ 20 A1ACZ H1 H1 H 0 1 N N N N N N 25.537 10.744 9.666 4.756 1.941 0.643 H1 A1ACZ 21 A1ACZ H2 H2 H 0 1 N N N N N N 25.383 10.003 8.219 5.962 0.881 0.149 H2 A1ACZ 22 A1ACZ H3 H3 H 0 1 N N N N N N 22.782 8.730 12.258 3.819 -2.828 -1.417 H3 A1ACZ 23 A1ACZ H4 H4 H 0 1 N N N N N N 19.295 7.911 9.637 -0.643 -1.491 -1.007 H4 A1ACZ 24 A1ACZ H5 H5 H 0 1 N N N N N N 17.399 5.961 7.895 -3.234 -1.054 -1.342 H5 A1ACZ 25 A1ACZ H6 H6 H 0 1 N N N N N N 18.172 7.531 5.412 -5.045 0.408 -0.374 H6 A1ACZ 26 A1ACZ H7 H7 H 0 1 N N N N N N 16.647 6.608 5.633 -3.814 1.643 -0.018 H7 A1ACZ 27 A1ACZ H8 H8 H 0 1 N N N N N N 18.295 5.376 4.559 -4.858 2.011 -2.135 H8 A1ACZ 28 A1ACZ H9 H9 H 0 1 N N N N N N 16.328 8.462 7.317 -3.276 -0.119 1.534 H9 A1ACZ 29 A1ACZ H10 H10 H 0 1 N N N N N N 16.089 8.442 9.657 -4.590 -1.973 0.726 H10 A1ACZ 30 A1ACZ H11 H11 H 0 1 N N N N N N 18.438 9.594 7.248 -1.015 -0.504 1.826 H11 A1ACZ 31 A1ACZ H12 H12 H 0 1 N N N N N N 18.735 10.614 9.312 -1.580 -2.841 2.016 H12 A1ACZ 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ACZ O1 C9 SING N N 1 A1ACZ CL C4 SING N N 2 A1ACZ C9 C8 SING N N 3 A1ACZ C4 N2 DOUB Y N 4 A1ACZ C4 N3 SING Y N 5 A1ACZ N2 C3 SING Y N 6 A1ACZ C8 O SING N N 7 A1ACZ C8 C7 SING N N 8 A1ACZ O C5 SING N N 9 A1ACZ C7 C6 SING N N 10 A1ACZ C7 O2 SING N N 11 A1ACZ C6 C5 SING N N 12 A1ACZ C6 O3 SING N N 13 A1ACZ N3 C5 SING N N 14 A1ACZ N3 C2 SING Y N 15 A1ACZ C3 C2 DOUB Y N 16 A1ACZ C3 C SING Y N 17 A1ACZ N4 C SING N N 18 A1ACZ C2 N1 SING Y N 19 A1ACZ C N DOUB Y N 20 A1ACZ N1 C1 DOUB Y N 21 A1ACZ N C1 SING Y N 22 A1ACZ N4 H1 SING N N 23 A1ACZ N4 H2 SING N N 24 A1ACZ C1 H3 SING N N 25 A1ACZ C5 H4 SING N N 26 A1ACZ C8 H5 SING N N 27 A1ACZ C9 H6 SING N N 28 A1ACZ C9 H7 SING N N 29 A1ACZ O1 H8 SING N N 30 A1ACZ C7 H9 SING N N 31 A1ACZ O2 H10 SING N N 32 A1ACZ C6 H11 SING N N 33 A1ACZ O3 H12 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ACZ SMILES ACDLabs 12.01 "Nc1ncnc2c1nc(Cl)n2C1OC(CO)C(O)C1O" A1ACZ InChI InChI 1.06 "InChI=1S/C10H12ClN5O4/c11-10-15-4-7(12)13-2-14-8(4)16(10)9-6(19)5(18)3(1-17)20-9/h2-3,5-6,9,17-19H,1H2,(H2,12,13,14)/t3-,5-,6-,9-/m1/s1" A1ACZ InChIKey InChI 1.06 MHDPPLULTMGBSI-UUOKFMHZSA-N A1ACZ SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)c(Cl)nc12" A1ACZ SMILES CACTVS 3.385 "Nc1ncnc2n([CH]3O[CH](CO)[CH](O)[CH]3O)c(Cl)nc12" A1ACZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)Cl)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N" A1ACZ SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)Cl)C3C(C(C(O3)CO)O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ACZ "SYSTEMATIC NAME" ACDLabs 12.01 8-chloroadenosine A1ACZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R})-2-(6-azanyl-8-chloranyl-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ACZ "Create component" 2024-01-17 RCSB A1ACZ "Initial release" 2024-12-11 RCSB #