data_A1AD0 # _chem_comp.id A1AD0 _chem_comp.name "(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H33 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 439.547 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AD0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8VSG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AD0 N1 N1 N 0 1 N N N N N N -10.946 -1.969 -17.384 1.633 -0.847 -0.317 N1 A1AD0 1 A1AD0 N3 N2 N 0 1 N N N N N N -10.853 -7.561 -13.693 -5.786 2.128 -1.573 N3 A1AD0 2 A1AD0 C4 C1 C 0 1 N N S N N N -12.025 0.065 -18.003 1.803 -2.916 0.876 C4 A1AD0 3 A1AD0 C5 C2 C 0 1 N N N N N N -11.473 -1.247 -18.552 2.248 -1.438 0.895 C5 A1AD0 4 A1AD0 C6 C3 C 0 1 N N S N N N -11.197 -1.255 -16.112 0.287 -1.462 -0.382 C6 A1AD0 5 A1AD0 C7 C4 C 0 1 N N R N N N -11.831 0.079 -16.520 0.510 -2.932 0.034 C7 A1AD0 6 A1AD0 C8 C5 C 0 1 N N N N N N -12.165 -2.090 -15.249 -0.650 -0.780 0.581 C8 A1AD0 7 A1AD0 C10 C6 C 0 1 N N N N N N -11.757 -4.341 -12.606 -4.272 -0.099 0.720 C10 A1AD0 8 A1AD0 C13 C7 C 0 1 N N N N N N -11.945 -7.524 -14.620 -4.747 3.059 -1.116 C13 A1AD0 9 A1AD0 C15 C8 C 0 1 N N N N N N -13.185 -2.323 -11.891 -3.017 -1.087 2.641 C15 A1AD0 10 A1AD0 C17 C9 C 0 1 N N N N N N -10.328 -3.884 -18.721 3.526 0.646 -0.869 C17 A1AD0 11 A1AD0 C20 C10 C 0 1 Y N N N N N -9.407 -3.416 -19.837 3.519 1.884 -0.011 C20 A1AD0 12 A1AD0 C21 C11 C 0 1 Y N N N N N -8.202 -2.731 -19.539 2.436 2.742 -0.044 C21 A1AD0 13 A1AD0 C22 C12 C 0 1 Y N N N N N -7.335 -2.333 -20.574 2.430 3.878 0.744 C22 A1AD0 14 A1AD0 C24 C13 C 0 1 Y N N N N N -8.854 -3.279 -22.219 4.591 3.299 1.596 C24 A1AD0 15 A1AD0 C1 C14 C 0 1 N N N N N N -9.617 1.069 -17.573 2.520 -2.999 -1.638 C1 A1AD0 16 A1AD0 C2 C15 C 0 1 N N N N N N -11.127 1.116 -17.377 1.768 -3.641 -0.470 C2 A1AD0 17 A1AD0 C3 C16 C 0 1 N N N N N N -11.598 2.556 -17.315 1.771 -5.171 -0.447 C3 A1AD0 18 A1AD0 N2 N3 N 0 1 N N N N N N -11.869 -2.254 -13.953 -1.983 -0.911 0.431 N2 A1AD0 19 A1AD0 C9 C17 C 0 1 N N S N N N -12.633 -3.147 -13.071 -2.894 -0.247 1.367 C9 A1AD0 20 A1AD0 C11 C18 C 0 1 N N S N N N -11.209 -5.233 -13.733 -4.166 0.815 -0.503 C11 A1AD0 21 A1AD0 C12 C19 C 0 1 N N N N N N -12.276 -5.990 -14.603 -3.927 2.279 -0.065 C12 A1AD0 22 A1AD0 C14 C20 C 0 1 N N N N N N -10.442 -6.420 -13.214 -5.482 0.859 -1.247 C14 A1AD0 23 A1AD0 O1 O1 O 0 1 N N N N N N -9.520 -6.298 -12.417 -6.166 -0.108 -1.506 O1 A1AD0 24 A1AD0 O2 O2 O 0 1 N N N N N N -13.984 -3.134 -11.052 -3.638 -2.336 2.330 O2 A1AD0 25 A1AD0 O3 O3 O 0 1 N N N N N N -13.142 -2.618 -15.778 -0.205 -0.113 1.491 O3 A1AD0 26 A1AD0 C16 C21 C 0 1 N N N N N N -10.310 -3.160 -17.401 2.173 0.051 -1.164 C16 A1AD0 27 A1AD0 C18 C22 C 0 1 N N N N N N -10.419 -5.401 -18.582 4.702 -0.320 -0.707 C18 A1AD0 28 A1AD0 C19 C23 C 0 1 N N N N N N -11.641 -4.623 -18.977 4.593 0.549 -1.962 C19 A1AD0 29 A1AD0 C23 C24 C 0 1 Y N N N N N -7.659 -2.616 -21.910 3.507 4.157 1.563 C23 A1AD0 30 A1AD0 C25 C25 C 0 1 Y N N N N N -9.726 -3.679 -21.192 4.594 2.160 0.813 C25 A1AD0 31 A1AD0 O4 O4 O 0 1 N N N N N N -9.761 -3.628 -16.404 1.571 0.381 -2.163 O4 A1AD0 32 A1AD0 HN3 H1 H 0 1 N N N N N N -10.425 -8.424 -13.425 -6.590 2.393 -2.046 HN3 A1AD0 33 A1AD0 HC4 H2 H 0 1 N N N N N N -12.997 0.402 -18.394 1.897 -3.493 1.796 HC4 A1AD0 34 A1AD0 H5_1 H3 H 0 0 N N N N N N -12.272 -1.828 -19.035 3.334 -1.367 0.843 H5_1 A1AD0 35 A1AD0 H5_2 H4 H 0 0 N N N N N N -10.670 -1.053 -19.279 1.876 -0.940 1.791 H5_2 A1AD0 36 A1AD0 HC6 H5 H 0 1 N N N N N N -10.258 -1.080 -15.566 -0.107 -1.408 -1.397 HC6 A1AD0 37 A1AD0 HC7 H6 H 0 1 N N N N N N -12.672 0.432 -15.905 -0.364 -3.510 0.334 HC7 A1AD0 38 A1AD0 H102 H7 H 0 0 N N N N N N -12.366 -4.970 -11.940 -4.635 -1.079 0.410 H102 A1AD0 39 A1AD0 H101 H8 H 0 0 N N N N N N -10.901 -3.937 -12.046 -4.967 0.336 1.439 H101 A1AD0 40 A1AD0 H131 H9 H 0 0 N N N N N N -12.796 -8.128 -14.271 -4.110 3.352 -1.950 H131 A1AD0 41 A1AD0 H132 H10 H 0 0 N N N N N N -11.641 -7.864 -15.621 -5.203 3.939 -0.662 H132 A1AD0 42 A1AD0 HC15 H11 H 0 0 N N N N N N -12.345 -1.917 -11.309 -2.024 -1.267 3.054 HC15 A1AD0 43 A1AD0 H1 H12 H 0 1 N N N N N N -13.795 -1.495 -12.282 -3.623 -0.551 3.372 H1 A1AD0 44 A1AD0 HC21 H13 H 0 0 N N N N N N -7.948 -2.513 -18.512 1.594 2.524 -0.684 HC21 A1AD0 45 A1AD0 HC22 H14 H 0 0 N N N N N N -6.420 -1.809 -20.340 1.583 4.548 0.718 HC22 A1AD0 46 A1AD0 HC24 H15 H 0 0 N N N N N N -9.106 -3.483 -23.249 5.433 3.517 2.237 HC24 A1AD0 47 A1AD0 H1_2 H16 H 0 0 N N N N N N -9.151 1.913 -17.043 3.382 -3.613 -1.897 H1_2 A1AD0 48 A1AD0 H1_1 H17 H 0 0 N N N N N N -9.225 0.123 -17.172 1.856 -2.921 -2.499 H1_1 A1AD0 49 A1AD0 H1_3 H18 H 0 0 N N N N N N -9.384 1.137 -18.646 2.857 -2.003 -1.349 H1_3 A1AD0 50 A1AD0 H3_3 H19 H 0 0 N N N N N N -10.826 3.174 -16.833 1.645 -5.519 0.578 H3_3 A1AD0 51 A1AD0 H3_2 H20 H 0 0 N N N N N N -11.780 2.926 -18.335 0.952 -5.546 -1.061 H3_2 A1AD0 52 A1AD0 H3_1 H21 H 0 0 N N N N N N -12.529 2.612 -16.733 2.718 -5.539 -0.842 H3_1 A1AD0 53 A1AD0 HN2 H22 H 0 1 N N N N N N -11.096 -1.748 -13.570 -2.339 -1.444 -0.296 HN2 A1AD0 54 A1AD0 HC9 H23 H 0 1 N N N N N N -13.488 -3.554 -13.630 -2.503 0.738 1.618 HC9 A1AD0 55 A1AD0 HC11 H24 H 0 0 N N N N N N -10.567 -4.633 -14.395 -3.366 0.477 -1.162 HC11 A1AD0 56 A1AD0 H122 H25 H 0 0 N N N N N N -12.255 -5.599 -15.631 -2.870 2.537 -0.125 H122 A1AD0 57 A1AD0 H121 H26 H 0 0 N N N N N N -13.276 -5.836 -14.172 -4.314 2.453 0.939 H121 A1AD0 58 A1AD0 HO2 H27 H 0 1 N N N N N N -14.317 -2.613 -10.331 -3.748 -2.920 3.092 HO2 A1AD0 59 A1AD0 H182 H28 H 0 0 N N N N N N -10.362 -5.865 -17.586 5.470 -0.059 0.021 H182 A1AD0 60 A1AD0 H181 H29 H 0 0 N N N N N N -9.921 -6.050 -19.317 4.496 -1.385 -0.812 H181 A1AD0 61 A1AD0 H191 H30 H 0 0 N N N N N N -12.477 -4.518 -18.270 4.317 0.055 -2.893 H191 A1AD0 62 A1AD0 H192 H31 H 0 0 N N N N N N -12.035 -4.703 -20.001 5.291 1.381 -2.060 H192 A1AD0 63 A1AD0 HC23 H32 H 0 0 N N N N N N -6.986 -2.322 -22.702 3.504 5.047 2.175 HC23 A1AD0 64 A1AD0 HC25 H33 H 0 0 N N N N N N -10.645 -4.190 -21.437 5.441 1.490 0.839 HC25 A1AD0 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AD0 C24 C23 DOUB Y N 1 A1AD0 C24 C25 SING Y N 2 A1AD0 C23 C22 SING Y N 3 A1AD0 C25 C20 DOUB Y N 4 A1AD0 C22 C21 DOUB Y N 5 A1AD0 C20 C21 SING Y N 6 A1AD0 C20 C17 SING N N 7 A1AD0 C19 C17 SING N N 8 A1AD0 C19 C18 SING N N 9 A1AD0 C17 C18 SING N N 10 A1AD0 C17 C16 SING N N 11 A1AD0 C5 C4 SING N N 12 A1AD0 C5 N1 SING N N 13 A1AD0 C4 C2 SING N N 14 A1AD0 C4 C7 SING N N 15 A1AD0 C1 C2 SING N N 16 A1AD0 C16 N1 SING N N 17 A1AD0 C16 O4 DOUB N N 18 A1AD0 N1 C6 SING N N 19 A1AD0 C2 C3 SING N N 20 A1AD0 C2 C7 SING N N 21 A1AD0 C7 C6 SING N N 22 A1AD0 C6 C8 SING N N 23 A1AD0 O3 C8 DOUB N N 24 A1AD0 C8 N2 SING N N 25 A1AD0 C13 C12 SING N N 26 A1AD0 C13 N3 SING N N 27 A1AD0 C12 C11 SING N N 28 A1AD0 N2 C9 SING N N 29 A1AD0 C11 C14 SING N N 30 A1AD0 C11 C10 SING N N 31 A1AD0 N3 C14 SING N N 32 A1AD0 C14 O1 DOUB N N 33 A1AD0 C9 C10 SING N N 34 A1AD0 C9 C15 SING N N 35 A1AD0 C15 O2 SING N N 36 A1AD0 N3 HN3 SING N N 37 A1AD0 C4 HC4 SING N N 38 A1AD0 C5 H5_1 SING N N 39 A1AD0 C5 H5_2 SING N N 40 A1AD0 C6 HC6 SING N N 41 A1AD0 C7 HC7 SING N N 42 A1AD0 C10 H102 SING N N 43 A1AD0 C10 H101 SING N N 44 A1AD0 C13 H131 SING N N 45 A1AD0 C13 H132 SING N N 46 A1AD0 C15 HC15 SING N N 47 A1AD0 C15 H1 SING N N 48 A1AD0 C21 HC21 SING N N 49 A1AD0 C22 HC22 SING N N 50 A1AD0 C24 HC24 SING N N 51 A1AD0 C1 H1_2 SING N N 52 A1AD0 C1 H1_1 SING N N 53 A1AD0 C1 H1_3 SING N N 54 A1AD0 C3 H3_3 SING N N 55 A1AD0 C3 H3_2 SING N N 56 A1AD0 C3 H3_1 SING N N 57 A1AD0 N2 HN2 SING N N 58 A1AD0 C9 HC9 SING N N 59 A1AD0 C11 HC11 SING N N 60 A1AD0 C12 H122 SING N N 61 A1AD0 C12 H121 SING N N 62 A1AD0 O2 HO2 SING N N 63 A1AD0 C18 H182 SING N N 64 A1AD0 C18 H181 SING N N 65 A1AD0 C19 H191 SING N N 66 A1AD0 C19 H192 SING N N 67 A1AD0 C23 HC23 SING N N 68 A1AD0 C25 HC25 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AD0 SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C1(CC1)c1ccccc1" A1AD0 InChI InChI 1.06 "InChI=1S/C25H33N3O4/c1-24(2)18-13-28(23(32)25(9-10-25)16-6-4-3-5-7-16)20(19(18)24)22(31)27-17(14-29)12-15-8-11-26-21(15)30/h3-7,15,17-20,29H,8-14H2,1-2H3,(H,26,30)(H,27,31)/t15-,17-,18-,19-,20-/m0/s1" A1AD0 InChIKey InChI 1.06 BJOCSYXAWSVVOR-JBDAPHQKSA-N A1AD0 SMILES_CANONICAL CACTVS 3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)C4(CC4)c5ccccc5" A1AD0 SMILES CACTVS 3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)C4(CC4)c5ccccc5" A1AD0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)C3(CC3)c4ccccc4)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C" A1AD0 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C3(CC3)c4ccccc4)C(=O)NC(CC5CCNC5=O)CO)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AD0 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-(1-phenylcyclopropane-1-carbonyl)-3-azabicyclo[3.1.0]hexane-2-carboxamide" A1AD0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-(1-phenylcyclopropyl)carbonyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AD0 "Create component" 2024-01-29 RCSB A1AD0 "Initial release" 2024-04-03 RCSB A1AD0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AD0 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #