data_A1ADA # _chem_comp.id A1ADA _chem_comp.name "5-{[5-chloro-2-(dimethylamino)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H14 Cl N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-18 _chem_comp.pdbx_modified_date 2024-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 303.747 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ADA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7GWG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ADA C10 C1 C 0 1 N N N N N N 22.049 -10.868 19.895 -4.740 -0.573 0.391 C10 A1ADA 1 A1ADA C11 C2 C 0 1 N N N N N N 23.094 -11.816 19.279 -3.360 -0.954 0.883 C11 A1ADA 2 A1ADA C12 C3 C 0 1 Y N N N N N 23.812 -10.928 18.298 -2.464 0.141 0.351 C12 A1ADA 3 A1ADA C13 C4 C 0 1 Y N N N N N 24.857 -11.229 17.418 -1.110 0.368 0.446 C13 A1ADA 4 A1ADA O O1 O 0 1 N N N N N N 21.191 -11.123 20.721 -5.769 -1.182 0.591 O A1ADA 5 A1ADA N3 N1 N 0 1 N N N N N N 22.207 -9.582 19.313 -4.611 0.571 -0.303 N3 A1ADA 6 A1ADA C9 C5 C 0 1 Y N N N N N 23.244 -9.617 18.356 -3.286 1.013 -0.351 C9 A1ADA 7 A1ADA C8 C6 C 0 1 Y N N N N N 23.705 -8.575 17.532 -2.723 2.133 -0.959 C8 A1ADA 8 A1ADA C7 C7 C 0 1 Y N N N N N 24.748 -8.870 16.634 -1.367 2.368 -0.862 C7 A1ADA 9 A1ADA C6 C8 C 0 1 Y N N N N N 25.331 -10.159 16.560 -0.552 1.485 -0.167 C6 A1ADA 10 A1ADA N2 N2 N 0 1 N N N N N N 26.188 -10.606 15.507 0.824 1.726 -0.070 N2 A1ADA 11 A1ADA C5 C9 C 0 1 Y N N N N N 26.277 -10.138 14.235 1.713 0.662 -0.026 C5 A1ADA 12 A1ADA C4 C10 C 0 1 Y N N N N N 27.293 -10.599 13.344 3.075 0.886 0.187 C4 A1ADA 13 A1ADA CL CL1 CL 0 0 N N N N N N 28.578 -11.477 13.898 3.689 2.495 0.401 CL A1ADA 14 A1ADA C3 C11 C 0 1 Y N N N N N 27.214 -10.251 12.006 3.924 -0.205 0.223 C3 A1ADA 15 A1ADA N1 N3 N 0 1 Y N N N N N 26.225 -9.469 11.534 3.424 -1.421 0.057 N1 A1ADA 16 A1ADA N4 N4 N 0 1 Y N N N N N 25.282 -9.350 13.778 1.280 -0.585 -0.180 N4 A1ADA 17 A1ADA C2 C12 C 0 1 Y N N N N N 25.282 -9.017 12.449 2.127 -1.602 -0.143 C2 A1ADA 18 A1ADA N N5 N 0 1 N N N N N N 24.291 -8.079 12.038 1.644 -2.889 -0.313 N A1ADA 19 A1ADA C1 C13 C 0 1 N N N N N N 24.201 -7.604 10.625 0.213 -3.111 -0.535 C1 A1ADA 20 A1ADA C C14 C 0 1 N N N N N N 23.273 -7.517 12.993 2.564 -4.028 -0.270 C A1ADA 21 A1ADA H1 H1 H 0 1 N N N N N N 22.610 -12.661 18.768 -3.334 -0.973 1.972 H1 A1ADA 22 A1ADA H2 H2 H 0 1 N N N N N N 23.784 -12.198 20.046 -3.065 -1.922 0.478 H2 A1ADA 23 A1ADA H3 H3 H 0 1 N N N N N N 25.293 -12.216 17.379 -0.483 -0.318 0.995 H3 A1ADA 24 A1ADA H4 H4 H 0 1 N N N N N N 21.666 -8.774 19.546 -5.352 1.034 -0.724 H4 A1ADA 25 A1ADA H5 H5 H 0 1 N N N N N N 23.275 -7.586 17.586 -3.350 2.820 -1.508 H5 A1ADA 26 A1ADA H6 H6 H 0 1 N N N N N N 25.115 -8.091 15.982 -0.937 3.238 -1.336 H6 A1ADA 27 A1ADA H7 H7 H 0 1 N N N N N N 26.802 -11.361 15.737 1.155 2.637 -0.034 H7 A1ADA 28 A1ADA H8 H8 H 0 1 N N N N N N 27.966 -10.617 11.323 4.983 -0.067 0.385 H8 A1ADA 29 A1ADA H9 H9 H 0 1 N N N N N N 23.371 -6.889 10.530 0.004 -3.087 -1.605 H9 A1ADA 30 A1ADA H10 H10 H 0 1 N N N N N N 25.143 -7.111 10.343 -0.071 -4.083 -0.131 H10 A1ADA 31 A1ADA H11 H11 H 0 1 N N N N N N 24.023 -8.462 9.960 -0.358 -2.329 -0.035 H11 A1ADA 32 A1ADA H12 H12 H 0 1 N N N N N N 23.439 -7.938 13.996 2.647 -4.390 0.755 H12 A1ADA 33 A1ADA H13 H13 H 0 1 N N N N N N 23.373 -6.422 13.033 2.184 -4.827 -0.907 H13 A1ADA 34 A1ADA H14 H14 H 0 1 N N N N N N 22.262 -7.780 12.648 3.546 -3.716 -0.626 H14 A1ADA 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ADA C1 N SING N N 1 A1ADA N1 C3 DOUB Y N 2 A1ADA N1 C2 SING Y N 3 A1ADA C3 C4 SING Y N 4 A1ADA N C2 SING N N 5 A1ADA N C SING N N 6 A1ADA C2 N4 DOUB Y N 7 A1ADA C4 CL SING N N 8 A1ADA C4 C5 DOUB Y N 9 A1ADA N4 C5 SING Y N 10 A1ADA C5 N2 SING N N 11 A1ADA N2 C6 SING N N 12 A1ADA C6 C7 DOUB Y N 13 A1ADA C6 C13 SING Y N 14 A1ADA C7 C8 SING Y N 15 A1ADA C13 C12 DOUB Y N 16 A1ADA C8 C9 DOUB Y N 17 A1ADA C12 C9 SING Y N 18 A1ADA C12 C11 SING N N 19 A1ADA C9 N3 SING N N 20 A1ADA C11 C10 SING N N 21 A1ADA N3 C10 SING N N 22 A1ADA C10 O DOUB N N 23 A1ADA C11 H1 SING N N 24 A1ADA C11 H2 SING N N 25 A1ADA C13 H3 SING N N 26 A1ADA N3 H4 SING N N 27 A1ADA C8 H5 SING N N 28 A1ADA C7 H6 SING N N 29 A1ADA N2 H7 SING N N 30 A1ADA C3 H8 SING N N 31 A1ADA C1 H9 SING N N 32 A1ADA C1 H10 SING N N 33 A1ADA C1 H11 SING N N 34 A1ADA C H12 SING N N 35 A1ADA C H13 SING N N 36 A1ADA C H14 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ADA SMILES ACDLabs 12.01 "CN(C)c1ncc(Cl)c(n1)Nc1cc2CC(=O)Nc2cc1" A1ADA InChI InChI 1.06 "InChI=1S/C14H14ClN5O/c1-20(2)14-16-7-10(15)13(19-14)17-9-3-4-11-8(5-9)6-12(21)18-11/h3-5,7H,6H2,1-2H3,(H,18,21)(H,16,17,19)" A1ADA InChIKey InChI 1.06 MDNVCBTZAJHKQF-UHFFFAOYSA-N A1ADA SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1" A1ADA SMILES CACTVS 3.385 "CN(C)c1ncc(Cl)c(Nc2ccc3NC(=O)Cc3c2)n1" A1ADA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl" A1ADA SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ncc(c(n1)Nc2ccc3c(c2)CC(=O)N3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ADA "SYSTEMATIC NAME" ACDLabs 12.01 "5-{[5-chloro-2-(dimethylamino)pyrimidin-4-yl]amino}-1,3-dihydro-2H-indol-2-one" A1ADA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[[5-chloranyl-2-(dimethylamino)pyrimidin-4-yl]amino]-1,3-dihydroindol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ADA "Create component" 2024-01-18 RCSB A1ADA "Initial release" 2024-12-11 RCSB #