data_A1ADB # _chem_comp.id A1ADB _chem_comp.name "N-{3-[(2-amino-6-methylpyrimidin-4-yl)amino]-5-[(4-methylpiperazin-1-yl)methyl]phenyl}-3-[(quinolin-4-yl)amino]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H35 N9 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-19 _chem_comp.pdbx_modified_date 2024-09-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.691 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ADB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8VPI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ADB C2 C1 C 0 1 N N N N N N -37.369 -22.600 -2.674 -1.261 1.424 -0.345 C2 A1ADB 1 A1ADB C3 C2 C 0 1 Y N N N N N -35.940 -22.938 -2.386 -2.507 2.212 -0.231 C3 A1ADB 2 A1ADB O1 O1 O 0 1 N N N N N N -37.636 -21.785 -3.553 -1.316 0.225 -0.532 O1 A1ADB 3 A1ADB C4 C3 C 0 1 Y N N N N N -35.352 -24.184 -2.591 -2.448 3.591 -0.022 C4 A1ADB 4 A1ADB C5 C4 C 0 1 Y N N N N N -33.993 -24.359 -2.393 -3.612 4.324 0.084 C5 A1ADB 5 A1ADB C6 C5 C 0 1 Y N N N N N -33.203 -23.295 -1.989 -4.840 3.697 -0.015 C6 A1ADB 6 A1ADB C7 C6 C 0 1 Y N N N N N -33.779 -22.046 -1.780 -4.911 2.324 -0.223 C7 A1ADB 7 A1ADB C9 C7 C 0 1 Y N N N N N -32.500 -20.765 -0.086 -6.343 0.439 0.236 C9 A1ADB 8 A1ADB C10 C8 C 0 1 Y N N N N N -32.369 -19.447 0.444 -7.527 -0.298 -0.007 C10 A1ADB 9 A1ADB C11 C9 C 0 1 Y N N N N N -32.813 -18.281 -0.229 -8.552 0.214 -0.815 C11 A1ADB 10 A1ADB C12 C10 C 0 1 Y N N N N N -32.708 -17.052 0.353 -9.676 -0.527 -1.026 C12 A1ADB 11 A1ADB C13 C11 C 0 1 Y N N N N N -32.161 -16.916 1.620 -9.820 -1.786 -0.450 C13 A1ADB 12 A1ADB C14 C12 C 0 1 Y N N N N N -31.715 -18.012 2.308 -8.843 -2.312 0.340 C14 A1ADB 13 A1ADB C15 C13 C 0 1 Y N N N N N -31.808 -19.302 1.739 -7.670 -1.578 0.580 C15 A1ADB 14 A1ADB C17 C14 C 0 1 Y N N N N N -31.537 -21.576 1.942 -5.592 -1.398 1.584 C17 A1ADB 15 A1ADB C18 C15 C 0 1 Y N N N N N -32.073 -21.820 0.689 -5.376 -0.136 1.045 C18 A1ADB 16 A1ADB C19 C16 C 0 1 Y N N N N N -35.144 -21.872 -1.978 -3.747 1.580 -0.337 C19 A1ADB 17 A1ADB C21 C17 C 0 1 Y N N N N N -38.338 -24.132 -0.858 1.110 1.280 -0.222 C21 A1ADB 18 A1ADB C22 C18 C 0 1 Y N N N N N -37.367 -25.084 -0.563 2.282 1.795 -0.761 C22 A1ADB 19 A1ADB C23 C19 C 0 1 Y N N N N N -37.565 -26.005 0.456 3.444 1.049 -0.732 C23 A1ADB 20 A1ADB C24 C20 C 0 1 N N N N N N -36.517 -27.029 0.780 4.714 1.611 -1.318 C24 A1ADB 21 A1ADB C26 C21 C 0 1 N N N N N N -37.240 -29.296 0.027 5.926 1.435 0.771 C26 A1ADB 22 A1ADB C27 C22 C 0 1 N N N N N N -37.526 -30.689 0.557 6.616 2.246 1.870 C27 A1ADB 23 A1ADB C29 C23 C 0 1 N N N N N N -35.529 -32.125 0.421 8.769 2.102 0.772 C29 A1ADB 24 A1ADB C30 C24 C 0 1 N N N N N N -35.524 -30.113 1.840 7.255 3.915 0.238 C30 A1ADB 25 A1ADB C31 C25 C 0 1 N N N N N N -36.412 -28.988 2.341 6.565 3.104 -0.861 C31 A1ADB 26 A1ADB C32 C26 C 0 1 Y N N N N N -38.745 -25.972 1.183 3.445 -0.211 -0.167 C32 A1ADB 27 A1ADB C33 C27 C 0 1 Y N N N N N -39.725 -25.025 0.904 2.276 -0.733 0.375 C33 A1ADB 28 A1ADB C35 C28 C 0 1 Y N N N N N -41.055 -25.108 3.070 3.015 -3.028 0.363 C35 A1ADB 29 A1ADB C37 C29 C 0 1 Y N N N N N -42.351 -25.525 4.896 3.851 -5.175 0.423 C37 A1ADB 30 A1ADB C40 C30 C 0 1 Y N N N N N -40.069 -25.533 5.179 4.337 -3.889 -1.428 C40 A1ADB 31 A1ADB C41 C31 C 0 1 N N N N N N -38.903 -25.909 6.053 5.004 -3.736 -2.770 C41 A1ADB 32 A1ADB C42 C32 C 0 1 Y N N N N N -39.901 -25.234 3.843 3.618 -2.844 -0.883 C42 A1ADB 33 A1ADB C43 C33 C 0 1 Y N N N N N -39.517 -24.107 -0.118 1.107 0.014 0.346 C43 A1ADB 34 A1ADB N16 N1 N 0 1 Y N N N N N -31.394 -20.378 2.481 -6.694 -2.072 1.351 N16 A1ADB 35 A1ADB N20 N2 N 0 1 N N N N N N -38.346 -23.207 -1.939 -0.065 2.038 -0.248 N20 A1ADB 36 A1ADB N25 N3 N 0 1 N N N N N N -37.123 -28.351 1.182 5.449 2.345 -0.280 N25 A1ADB 37 A1ADB N28 N4 N 0 1 N N N N N N -36.343 -31.231 1.289 7.732 3.005 1.289 N28 A1ADB 38 A1ADB N34 N5 N 0 1 N N N N N N -40.904 -24.986 1.693 2.278 -2.009 0.946 N34 A1ADB 39 A1ADB N36 N6 N 0 1 Y N N N N N -42.292 -25.239 3.574 3.153 -4.198 0.980 N36 A1ADB 40 A1ADB N38 N7 N 0 1 N N N N N N -43.553 -25.748 5.430 3.976 -6.381 1.091 N38 A1ADB 41 A1ADB N39 N8 N 0 1 Y N N N N N -41.293 -25.668 5.716 4.434 -5.028 -0.758 N39 A1ADB 42 A1ADB N8 N9 N 0 1 N N N N N N -33.038 -20.936 -1.340 -6.155 1.695 -0.321 N8 A1ADB 43 A1ADB H4 H1 H 0 1 N N N N N N -35.960 -25.019 -2.906 -1.490 4.084 0.056 H4 A1ADB 44 A1ADB H5 H2 H 0 1 N N N N N N -33.547 -25.329 -2.554 -3.564 5.390 0.246 H5 A1ADB 45 A1ADB H6 H3 H 0 1 N N N N N N -32.143 -23.435 -1.837 -5.748 4.276 0.069 H6 A1ADB 46 A1ADB H11 H4 H 0 1 N N N N N N -33.241 -18.367 -1.217 -8.451 1.189 -1.266 H11 A1ADB 47 A1ADB H12 H5 H 0 1 N N N N N N -33.054 -16.177 -0.177 -10.466 -0.132 -1.648 H12 A1ADB 48 A1ADB H13 H6 H 0 1 N N N N N N -32.086 -15.936 2.068 -10.720 -2.355 -0.632 H13 A1ADB 49 A1ADB H14 H7 H 0 1 N N N N N N -31.289 -17.890 3.293 -8.970 -3.290 0.780 H14 A1ADB 50 A1ADB H17 H8 H 0 1 N N N N N N -31.212 -22.427 2.522 -4.831 -1.837 2.212 H17 A1ADB 51 A1ADB H18 H9 H 0 1 N N N N N N -32.156 -22.832 0.321 -4.459 0.394 1.255 H18 A1ADB 52 A1ADB H19 H10 H 0 1 N N N N N N -35.590 -20.902 -1.814 -3.799 0.513 -0.498 H19 A1ADB 53 A1ADB H22 H11 H 0 1 N N N N N N -36.450 -25.106 -1.133 2.284 2.780 -1.204 H22 A1ADB 54 A1ADB H24A H12 H 0 0 N N N N N N -35.885 -27.183 -0.107 5.332 0.796 -1.694 H24A A1ADB 55 A1ADB H24B H13 H 0 0 N N N N N N -35.899 -26.655 1.610 4.467 2.288 -2.136 H24B A1ADB 56 A1ADB H26A H14 H 0 0 N N N N N N -38.062 -28.975 -0.630 6.635 0.725 0.343 H26A A1ADB 57 A1ADB H26B H15 H 0 0 N N N N N N -36.298 -29.303 -0.541 5.080 0.893 1.195 H26B A1ADB 58 A1ADB H27B H16 H 0 0 N N N N N N -38.385 -30.645 1.243 5.900 2.936 2.316 H27B A1ADB 59 A1ADB H27A H17 H 0 0 N N N N N N -37.764 -31.354 -0.286 6.996 1.570 2.637 H27A A1ADB 60 A1ADB H29C H18 H 0 0 N N N N N N -34.668 -32.505 0.990 8.343 1.462 0.000 H29C A1ADB 61 A1ADB H29B H19 H 0 0 N N N N N N -36.147 -32.970 0.083 9.583 2.690 0.347 H29B A1ADB 62 A1ADB H29A H20 H 0 0 N N N N N N -35.170 -31.561 -0.452 9.152 1.486 1.585 H29A A1ADB 63 A1ADB H30A H21 H 0 0 N N N N N N -34.915 -30.490 2.675 8.101 4.456 -0.186 H30A A1ADB 64 A1ADB H30B H22 H 0 0 N N N N N N -34.864 -29.726 1.050 6.547 4.625 0.665 H30B A1ADB 65 A1ADB H31A H23 H 0 0 N N N N N N -37.152 -29.393 3.047 6.185 3.780 -1.628 H31A A1ADB 66 A1ADB H31B H24 H 0 0 N N N N N N -35.794 -28.234 2.851 7.281 2.414 -1.307 H31B A1ADB 67 A1ADB H32 H25 H 0 1 N N N N N N -38.905 -26.689 1.974 4.356 -0.792 -0.145 H32 A1ADB 68 A1ADB H41C H26 H 0 0 N N N N N N -39.272 -26.247 7.032 6.016 -3.355 -2.632 H41C A1ADB 69 A1ADB H41A H27 H 0 0 N N N N N N -38.334 -26.720 5.576 5.046 -4.705 -3.267 H41A A1ADB 70 A1ADB H41B H28 H 0 0 N N N N N N -38.250 -25.034 6.190 4.433 -3.038 -3.382 H41B A1ADB 71 A1ADB H42 H29 H 0 1 N N N N N N -38.918 -25.103 3.414 3.523 -1.905 -1.409 H42 A1ADB 72 A1ADB H43 H30 H 0 1 N N N N N N -40.274 -23.370 -0.340 0.197 -0.389 0.766 H43 A1ADB 73 A1ADB H20 H31 H 0 1 N N N N N N -39.268 -22.944 -2.222 -0.019 3.006 -0.195 H20 A1ADB 74 A1ADB H34 H34 H 0 1 N N N N N N -41.753 -24.851 1.182 1.764 -2.180 1.751 H34 A1ADB 75 A1ADB H38B H35 H 0 0 N N N N N N -44.254 -25.662 4.722 4.484 -7.105 0.694 H38B A1ADB 76 A1ADB H38A H36 H 0 0 N N N N N N -43.580 -26.670 5.815 3.554 -6.502 1.956 H38A A1ADB 77 A1ADB H8 H37 H 0 1 N N N N N N -32.888 -20.201 -2.001 -6.887 2.137 -0.780 H8 A1ADB 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ADB O1 C2 DOUB N N 1 A1ADB C2 C3 SING N N 2 A1ADB C3 C4 DOUB Y N 3 A1ADB C4 C5 SING Y N 4 A1ADB C5 C6 DOUB Y N 5 A1ADB C6 C7 SING Y N 6 A1ADB C7 N8 SING N N 7 A1ADB N8 C9 SING N N 8 A1ADB C9 C10 SING Y N 9 A1ADB C10 C11 DOUB Y N 10 A1ADB C11 C12 SING Y N 11 A1ADB C12 C13 DOUB Y N 12 A1ADB C13 C14 SING Y N 13 A1ADB C10 C15 SING Y N 14 A1ADB C15 N16 SING Y N 15 A1ADB N16 C17 DOUB Y N 16 A1ADB C17 C18 SING Y N 17 A1ADB C7 C19 DOUB Y N 18 A1ADB C2 N20 SING N N 19 A1ADB N20 C21 SING N N 20 A1ADB C21 C22 DOUB Y N 21 A1ADB C22 C23 SING Y N 22 A1ADB C23 C24 SING N N 23 A1ADB C24 N25 SING N N 24 A1ADB N25 C26 SING N N 25 A1ADB C26 C27 SING N N 26 A1ADB C27 N28 SING N N 27 A1ADB N28 C29 SING N N 28 A1ADB N28 C30 SING N N 29 A1ADB C30 C31 SING N N 30 A1ADB C23 C32 DOUB Y N 31 A1ADB C32 C33 SING Y N 32 A1ADB C33 N34 SING N N 33 A1ADB N34 C35 SING N N 34 A1ADB C35 N36 DOUB Y N 35 A1ADB N36 C37 SING Y N 36 A1ADB C37 N38 SING N N 37 A1ADB C37 N39 DOUB Y N 38 A1ADB N39 C40 SING Y N 39 A1ADB C40 C41 SING N N 40 A1ADB C40 C42 DOUB Y N 41 A1ADB C33 C43 DOUB Y N 42 A1ADB C19 C3 SING Y N 43 A1ADB C18 C9 DOUB Y N 44 A1ADB C15 C14 DOUB Y N 45 A1ADB C43 C21 SING Y N 46 A1ADB C31 N25 SING N N 47 A1ADB C42 C35 SING Y N 48 A1ADB C4 H4 SING N N 49 A1ADB C5 H5 SING N N 50 A1ADB C6 H6 SING N N 51 A1ADB C11 H11 SING N N 52 A1ADB C12 H12 SING N N 53 A1ADB C13 H13 SING N N 54 A1ADB C14 H14 SING N N 55 A1ADB C17 H17 SING N N 56 A1ADB C18 H18 SING N N 57 A1ADB C19 H19 SING N N 58 A1ADB C22 H22 SING N N 59 A1ADB C24 H24A SING N N 60 A1ADB C24 H24B SING N N 61 A1ADB C26 H26A SING N N 62 A1ADB C26 H26B SING N N 63 A1ADB C27 H27B SING N N 64 A1ADB C27 H27A SING N N 65 A1ADB C29 H29C SING N N 66 A1ADB C29 H29B SING N N 67 A1ADB C29 H29A SING N N 68 A1ADB C30 H30A SING N N 69 A1ADB C30 H30B SING N N 70 A1ADB C31 H31A SING N N 71 A1ADB C31 H31B SING N N 72 A1ADB C32 H32 SING N N 73 A1ADB C41 H41C SING N N 74 A1ADB C41 H41A SING N N 75 A1ADB C41 H41B SING N N 76 A1ADB C42 H42 SING N N 77 A1ADB C43 H43 SING N N 78 A1ADB N20 H20 SING N N 79 A1ADB N34 H34 SING N N 80 A1ADB N38 H38B SING N N 81 A1ADB N38 H38A SING N N 82 A1ADB N8 H8 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ADB SMILES ACDLabs 12.01 "Cc1cc(nc(N)n1)Nc1cc(cc(NC(=O)c2cccc(Nc3ccnc4ccccc43)c2)c1)CN1CCN(C)CC1" A1ADB InChI InChI 1.06 "InChI=1S/C33H35N9O/c1-22-16-31(40-33(34)36-22)38-26-17-23(21-42-14-12-41(2)13-15-42)18-27(20-26)39-32(43)24-6-5-7-25(19-24)37-30-10-11-35-29-9-4-3-8-28(29)30/h3-11,16-20H,12-15,21H2,1-2H3,(H,35,37)(H,39,43)(H3,34,36,38,40)" A1ADB InChIKey InChI 1.06 HSJHGRCPBQHRPX-UHFFFAOYSA-N A1ADB SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2cc(NC(=O)c3cccc(Nc4ccnc5ccccc45)c3)cc(Nc6cc(C)nc(N)n6)c2" A1ADB SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2cc(NC(=O)c3cccc(Nc4ccnc5ccccc45)c3)cc(Nc6cc(C)nc(N)n6)c2" A1ADB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N)Nc2cc(cc(c2)NC(=O)c3cccc(c3)Nc4ccnc5c4cccc5)CN6CCN(CC6)C" A1ADB SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N)Nc2cc(cc(c2)NC(=O)c3cccc(c3)Nc4ccnc5c4cccc5)CN6CCN(CC6)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ADB "SYSTEMATIC NAME" ACDLabs 12.01 "N-{3-[(2-amino-6-methylpyrimidin-4-yl)amino]-5-[(4-methylpiperazin-1-yl)methyl]phenyl}-3-[(quinolin-4-yl)amino]benzamide" A1ADB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[3-[(2-azanyl-6-methyl-pyrimidin-4-yl)amino]-5-[(4-methylpiperazin-1-yl)methyl]phenyl]-3-(quinolin-4-ylamino)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ADB "Create component" 2024-01-19 RCSB A1ADB "Initial release" 2024-09-25 RCSB #