data_A1ADP # _chem_comp.id A1ADP _chem_comp.name "(2R,4R)-2-[(1R)-1-{[(2R)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]-2-(4-hydroxyphenyl)acetyl]amino}-2-oxoethyl]-5-methylidene-1,3-thiazinane-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H27 N5 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-24 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ADP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8VEN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ADP C11 C1 C 0 1 N N N N N N -14.744 4.599 22.649 3.174 0.122 0.801 C11 A1ADP 1 A1ADP C13 C2 C 0 1 N N N N N N -18.096 5.559 21.435 5.680 1.875 -1.158 C13 A1ADP 2 A1ADP C14 C3 C 0 1 Y N N N N N -11.967 3.014 25.098 -0.174 -2.196 1.355 C14 A1ADP 3 A1ADP C15 C4 C 0 1 Y N N N N N -11.708 5.434 25.210 0.786 -2.015 -0.833 C15 A1ADP 4 A1ADP C17 C5 C 0 1 N N N N N N -16.750 7.591 21.131 6.838 0.386 0.387 C17 A1ADP 5 A1ADP S01 S1 S 0 1 N N N N N N -7.888 5.607 22.681 -4.431 0.596 1.493 S01 A1ADP 6 A1ADP O01 O1 O 0 1 N N N N N N -9.741 2.198 19.699 -1.995 3.123 1.333 O01 A1ADP 7 A1ADP O02 O2 O 0 1 N N N N N N -11.174 6.062 21.872 0.012 1.673 -0.883 O02 A1ADP 8 A1ADP O03 O3 O 0 1 N N N N N N -5.311 1.186 21.657 -5.002 -0.576 -2.221 O03 A1ADP 9 A1ADP O04 O4 O 0 1 N N N N N N -6.365 0.784 23.429 -7.060 -1.233 -1.758 O04 A1ADP 10 A1ADP O05 O5 O 0 1 N N N N N N -15.050 3.459 23.023 3.083 -0.268 1.949 O05 A1ADP 11 A1ADP O06 O6 O 0 1 N N N N N N -14.537 7.321 21.658 5.419 -0.561 2.012 O06 A1ADP 12 A1ADP O07 O7 O 0 1 N N N N N N -16.480 8.686 20.810 7.855 -0.068 0.869 O07 A1ADP 13 A1ADP O O8 O 0 1 N N N N N N -10.918 3.987 28.491 -0.387 -5.420 -0.316 O A1ADP 14 A1ADP N01 N1 N 0 1 N N N N N N -7.396 3.226 21.598 -5.002 1.687 -0.891 N01 A1ADP 15 A1ADP N02 N2 N 0 1 N N N N N N -10.386 3.910 21.661 -1.600 0.738 0.322 N02 A1ADP 16 A1ADP N03 N3 N 0 1 N N N N N N -13.461 5.157 22.665 2.062 0.345 0.074 N03 A1ADP 17 A1ADP N04 N4 N 0 1 N N N N N N -15.747 5.540 22.204 4.389 0.336 0.257 N04 A1ADP 18 A1ADP N05 N5 N 0 1 N N N N N N -17.912 7.093 20.995 6.897 1.229 -0.663 N05 A1ADP 19 A1ADP C01 C6 C 0 1 N N R N N N -7.969 4.683 21.368 -3.975 0.857 -0.247 C01 A1ADP 20 A1ADP C02 C7 C 0 1 N N R N N N -9.364 4.373 20.740 -2.622 1.567 -0.321 C02 A1ADP 21 A1ADP C03 C8 C 0 1 N N N N N N -9.212 3.246 19.624 -2.712 2.894 0.388 C03 A1ADP 22 A1ADP C07 C9 C 0 1 N N R N N N -6.460 3.065 22.647 -6.283 0.987 -1.010 C07 A1ADP 23 A1ADP C04 C10 C 0 1 N N N N N N -5.593 4.188 22.904 -6.874 0.739 0.355 C04 A1ADP 24 A1ADP C05 C11 C 0 1 N N N N N N -6.118 5.516 22.941 -6.100 -0.115 1.340 C05 A1ADP 25 A1ADP C06 C12 C 0 1 N N N N N N -11.284 4.887 22.150 -0.306 0.869 -0.032 C06 A1ADP 26 A1ADP C08 C13 C 0 1 N N N N N N -4.001 4.045 22.860 -8.034 1.252 0.684 C08 A1ADP 27 A1ADP CA C14 C 0 1 N N R N N N -12.374 4.335 23.029 0.746 0.016 0.629 CA A1ADP 28 A1ADP C09 C15 C 0 1 N N N N N N -6.020 1.599 22.598 -6.068 -0.331 -1.708 C09 A1ADP 29 A1ADP C10 C16 C 0 1 Y N N N N N -11.986 4.273 24.509 0.444 -1.439 0.377 C10 A1ADP 30 A1ADP C12 C17 C 0 1 N N N N N N -17.189 4.951 22.194 4.497 0.914 -1.083 C12 A1ADP 31 A1ADP C16 C18 C 0 1 N N N N N N -15.578 6.770 21.731 5.501 0.017 0.949 C16 A1ADP 32 A1ADP C19 C19 C 0 1 N N N N N N -19.078 7.809 20.453 8.182 1.500 -1.312 C19 A1ADP 33 A1ADP C20 C20 C 0 1 Y N N N N N -11.590 2.901 26.446 -0.451 -3.529 1.126 C20 A1ADP 34 A1ADP C21 C21 C 0 1 Y N N N N N -11.359 5.329 26.568 0.501 -3.346 -1.071 C21 A1ADP 35 A1ADP C22 C22 C 0 1 Y N N N N N -11.280 4.078 27.151 -0.115 -4.108 -0.089 C22 A1ADP 36 A1ADP C23 C23 C 0 1 N N N N N N -19.316 7.245 19.014 8.409 0.489 -2.438 C23 A1ADP 37 A1ADP H1 H1 H 0 1 N N N N N N -19.049 5.502 21.981 5.468 2.755 -0.550 H1 A1ADP 38 A1ADP H2 H2 H 0 1 N N N N N N -18.170 4.974 20.506 5.831 2.180 -2.193 H2 A1ADP 39 A1ADP H3 H3 H 0 1 N N N N N N -12.238 2.137 24.528 -0.435 -1.745 2.301 H3 A1ADP 40 A1ADP H4 H4 H 0 1 N N N N N N -11.758 6.398 24.725 1.265 -1.421 -1.597 H4 A1ADP 41 A1ADP H5 H5 H 0 1 N N N N N N -6.014 -0.069 23.201 -6.875 -2.065 -2.217 H5 A1ADP 42 A1ADP H6 H6 H 0 1 N N N N N N -10.739 4.856 28.831 -1.257 -5.580 -0.706 H6 A1ADP 43 A1ADP H7 H7 H 0 1 N N N N N N -8.171 2.623 21.789 -5.113 2.565 -0.407 H7 A1ADP 44 A1ADP H9 H9 H 0 1 N N N N N N -10.452 2.951 21.935 -1.854 0.095 1.002 H9 A1ADP 45 A1ADP H10 H10 H 0 1 N N N N N N -13.318 6.117 22.424 2.132 0.724 -0.816 H10 A1ADP 46 A1ADP H11 H11 H 0 1 N N N N N N -7.352 5.163 20.594 -3.912 -0.105 -0.756 H11 A1ADP 47 A1ADP H12 H12 H 0 1 N N N N N N -9.717 5.286 20.239 -2.354 1.731 -1.365 H12 A1ADP 48 A1ADP H13 H13 H 0 1 N N N N N N -8.596 3.453 18.761 -3.417 3.640 0.051 H13 A1ADP 49 A1ADP H14 H14 H 0 1 N N N N N N -7.106 3.066 23.538 -6.972 1.594 -1.597 H14 A1ADP 50 A1ADP H16 H16 H 0 1 N N N N N N -5.622 6.106 22.156 -6.034 -1.138 0.970 H16 A1ADP 51 A1ADP H17 H17 H 0 1 N N N N N N -5.890 5.951 23.925 -6.598 -0.103 2.310 H17 A1ADP 52 A1ADP H18 H18 H 0 1 N N N N N N -3.379 4.928 22.859 -8.576 1.859 -0.026 H18 A1ADP 53 A1ADP H19 H19 H 0 1 N N N N N N -3.547 3.065 22.831 -8.447 1.068 1.664 H19 A1ADP 54 A1ADP H21 H21 H 0 1 N N N N N N -12.580 3.306 22.700 0.746 0.206 1.702 H21 A1ADP 55 A1ADP H22 H22 H 0 1 N N N N N N -17.560 4.970 23.229 3.579 1.455 -1.316 H22 A1ADP 56 A1ADP H23 H23 H 0 1 N N N N N N -17.117 3.909 21.850 4.636 0.114 -1.810 H23 A1ADP 57 A1ADP H24 H24 H 0 1 N N N N N N -18.874 8.889 20.409 8.176 2.508 -1.725 H24 A1ADP 58 A1ADP H25 H25 H 0 1 N N N N N N -19.961 7.628 21.083 8.984 1.413 -0.579 H25 A1ADP 59 A1ADP H26 H26 H 0 1 N N N N N N -11.539 1.936 26.929 -0.930 -4.121 1.893 H26 A1ADP 60 A1ADP H27 H27 H 0 1 N N N N N N -11.155 6.216 27.149 0.756 -3.792 -2.021 H27 A1ADP 61 A1ADP H28 H28 H 0 1 N N N N N N -20.182 7.749 18.560 8.415 -0.520 -2.024 H28 A1ADP 62 A1ADP H29 H29 H 0 1 N N N N N N -18.423 7.425 18.398 7.607 0.576 -3.171 H29 A1ADP 63 A1ADP H30 H30 H 0 1 N N N N N N -19.510 6.164 19.072 9.365 0.690 -2.920 H30 A1ADP 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ADP C23 C19 SING N N 1 A1ADP C03 O01 DOUB N N 2 A1ADP C03 C02 SING N N 3 A1ADP C19 N05 SING N N 4 A1ADP C02 C01 SING N N 5 A1ADP C02 N02 SING N N 6 A1ADP O07 C17 DOUB N N 7 A1ADP N05 C17 SING N N 8 A1ADP N05 C13 SING N N 9 A1ADP C17 C16 SING N N 10 A1ADP C01 N01 SING N N 11 A1ADP C01 S01 SING N N 12 A1ADP C13 C12 SING N N 13 A1ADP N01 C07 SING N N 14 A1ADP O03 C09 DOUB N N 15 A1ADP O06 C16 DOUB N N 16 A1ADP N02 C06 SING N N 17 A1ADP C16 N04 SING N N 18 A1ADP O02 C06 DOUB N N 19 A1ADP C06 CA SING N N 20 A1ADP C12 N04 SING N N 21 A1ADP N04 C11 SING N N 22 A1ADP C09 C07 SING N N 23 A1ADP C09 O04 SING N N 24 A1ADP C07 C04 SING N N 25 A1ADP C11 N03 SING N N 26 A1ADP C11 O05 DOUB N N 27 A1ADP N03 CA SING N N 28 A1ADP S01 C05 SING N N 29 A1ADP C08 C04 DOUB N N 30 A1ADP C04 C05 SING N N 31 A1ADP CA C10 SING N N 32 A1ADP C10 C14 DOUB Y N 33 A1ADP C10 C15 SING Y N 34 A1ADP C14 C20 SING Y N 35 A1ADP C15 C21 DOUB Y N 36 A1ADP C20 C22 DOUB Y N 37 A1ADP C21 C22 SING Y N 38 A1ADP C22 O SING N N 39 A1ADP C13 H1 SING N N 40 A1ADP C13 H2 SING N N 41 A1ADP C14 H3 SING N N 42 A1ADP C15 H4 SING N N 43 A1ADP O04 H5 SING N N 44 A1ADP O H6 SING N N 45 A1ADP N01 H7 SING N N 46 A1ADP N02 H9 SING N N 47 A1ADP N03 H10 SING N N 48 A1ADP C01 H11 SING N N 49 A1ADP C02 H12 SING N N 50 A1ADP C03 H13 SING N N 51 A1ADP C07 H14 SING N N 52 A1ADP C05 H16 SING N N 53 A1ADP C05 H17 SING N N 54 A1ADP C08 H18 SING N N 55 A1ADP C08 H19 SING N N 56 A1ADP CA H21 SING N N 57 A1ADP C12 H22 SING N N 58 A1ADP C12 H23 SING N N 59 A1ADP C19 H24 SING N N 60 A1ADP C19 H25 SING N N 61 A1ADP C20 H26 SING N N 62 A1ADP C21 H27 SING N N 63 A1ADP C23 H28 SING N N 64 A1ADP C23 H29 SING N N 65 A1ADP C23 H30 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ADP SMILES ACDLabs 12.01 "OC(=O)C1NC(SCC1=C)C(C=O)NC(=O)C(NC(=O)N1CCN(CC)C(=O)C1=O)c1ccc(O)cc1" A1ADP InChI InChI 1.06 "InChI=1S/C23H27N5O8S/c1-3-27-8-9-28(21(33)20(27)32)23(36)26-17(13-4-6-14(30)7-5-13)18(31)24-15(10-29)19-25-16(22(34)35)12(2)11-37-19/h4-7,10,15-17,19,25,30H,2-3,8-9,11H2,1H3,(H,24,31)(H,26,36)(H,34,35)/t15-,16-,17-,19-/m1/s1" A1ADP InChIKey InChI 1.06 ZGACUYALUWENPI-YWTNHNAXSA-N A1ADP SMILES_CANONICAL CACTVS 3.385 "CCN1CCN(C(=O)N[C@@H](C(=O)N[C@H](C=O)[C@@H]2N[C@@H](C(O)=O)C(=C)CS2)c3ccc(O)cc3)C(=O)C1=O" A1ADP SMILES CACTVS 3.385 "CCN1CCN(C(=O)N[CH](C(=O)N[CH](C=O)[CH]2N[CH](C(O)=O)C(=C)CS2)c3ccc(O)cc3)C(=O)C1=O" A1ADP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1CCN(C(=O)C1=O)C(=O)N[C@H](c2ccc(cc2)O)C(=O)N[C@H](C=O)[C@@H]3N[C@H](C(=C)CS3)C(=O)O" A1ADP SMILES "OpenEye OEToolkits" 2.0.7 "CCN1CCN(C(=O)C1=O)C(=O)NC(c2ccc(cc2)O)C(=O)NC(C=O)C3NC(C(=C)CS3)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ADP "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,4R)-2-[(1R)-1-{[(2R)-2-[(4-ethyl-2,3-dioxopiperazine-1-carbonyl)amino]-2-(4-hydroxyphenyl)acetyl]amino}-2-oxoethyl]-5-methylidene-1,3-thiazinane-4-carboxylic acid" A1ADP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{R})-2-[(1~{R})-1-[[(2~{R})-2-[[4-ethyl-2,3-bis(oxidanylidene)piperazin-1-yl]carbonylamino]-2-(4-hydroxyphenyl)ethanoyl]amino]-2-oxidanylidene-ethyl]-5-methylidene-1,3-thiazinane-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ADP "Create component" 2024-01-24 RCSB A1ADP "Initial release" 2024-03-20 RCSB A1ADP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ADP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C03 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #