data_A1ADS # _chem_comp.id A1ADS _chem_comp.name "N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-{(2R)-1-[(2S)-oxolan-2-yl]-3-[(3S)-2-oxooxolan-3-yl]propan-2-yl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H44 F N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-25 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.727 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ADS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UIF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ADS C10 C1 C 0 1 N N N N N N -19.453 7.920 30.544 1.752 1.279 -0.815 C10 A1ADS 1 A1ADS C13 C2 C 0 1 Y N N N N N -19.224 9.237 27.020 5.081 2.886 -1.578 C13 A1ADS 2 A1ADS C17 C3 C 0 1 Y N N N N N -21.174 8.738 28.903 2.793 3.449 -0.128 C17 A1ADS 3 A1ADS C22 C4 C 0 1 N N N N N N -19.596 6.010 35.791 6.724 -0.206 0.685 C22 A1ADS 4 A1ADS C24 C5 C 0 1 Y N N N N N -20.302 8.314 36.523 8.481 -1.101 -0.858 C24 A1ADS 5 A1ADS C26 C6 C 0 1 Y N N N N N -18.696 9.922 37.304 9.888 -2.930 -0.220 C26 A1ADS 6 A1ADS C28 C7 C 0 1 Y N N N N N -17.969 7.740 36.608 8.220 -2.119 1.294 C28 A1ADS 7 A1ADS C01 C8 C 0 1 N N N N N N -23.254 2.261 30.793 -2.503 -3.708 1.709 C01 A1ADS 8 A1ADS C02 C9 C 0 1 N N N N N N -24.008 3.526 30.377 -2.808 -2.436 2.502 C02 A1ADS 9 A1ADS C03 C10 C 0 1 N N N N N N -25.452 3.035 30.242 -2.943 -2.780 3.986 C03 A1ADS 10 A1ADS C04 C11 C 0 1 N N N N N N -23.557 3.773 28.925 -1.668 -1.432 2.313 C04 A1ADS 11 A1ADS C05 C12 C 0 1 N N S N N N -22.088 4.139 28.808 -1.631 -0.971 0.855 C05 A1ADS 12 A1ADS C07 C13 C 0 1 N N N N N N -20.527 5.704 29.961 0.742 -0.608 0.437 C07 A1ADS 13 A1ADS C09 C14 C 0 1 N N S N N N -20.341 6.779 31.039 1.942 0.298 0.343 C09 A1ADS 14 A1ADS C11 C15 C 0 1 Y N N N N N -19.846 8.475 29.194 2.893 2.264 -0.832 C11 A1ADS 15 A1ADS C12 C16 C 0 1 Y N N N N N -18.877 8.723 28.255 4.034 1.985 -1.561 C12 A1ADS 16 A1ADS C14 C17 C 0 1 Y N N N N N -20.547 9.497 26.728 4.987 4.069 -0.864 C14 A1ADS 17 A1ADS C16 C18 C 0 1 Y N N N N N -21.521 9.248 27.666 3.841 4.350 -0.139 C16 A1ADS 18 A1ADS C19 C19 C 0 1 N N N N N N -20.110 6.342 33.454 4.352 -0.036 0.478 C19 A1ADS 19 A1ADS C23 C20 C 0 1 Y N N N N N -19.283 7.389 36.336 7.839 -1.169 0.365 C23 A1ADS 20 A1ADS C25 C21 C 0 1 Y N N N N N -20.010 9.575 37.020 9.503 -1.984 -1.151 C25 A1ADS 21 A1ADS C27 C22 C 0 1 Y N N N N N -17.677 9.006 37.099 9.250 -2.994 1.004 C27 A1ADS 22 A1ADS C29 C23 C 0 1 N N N N N N -21.693 4.716 27.456 -2.901 -0.228 0.530 C29 A1ADS 23 A1ADS C32 C24 C 0 1 N N R N N N -20.623 4.373 25.257 -5.229 -0.194 -0.189 C32 A1ADS 24 A1ADS C33 C25 C 0 1 N N N N N N -19.144 3.982 25.177 -6.135 -1.143 -0.976 C33 A1ADS 25 A1ADS C34 C26 C 0 1 N N S N N N -18.194 5.031 25.797 -5.431 -1.564 -2.268 C34 A1ADS 26 A1ADS C35 C27 C 0 1 N N N N N N -18.181 6.244 24.915 -6.374 -2.422 -3.139 C35 A1ADS 27 A1ADS C36 C28 C 0 1 N N N N N N -16.736 6.558 24.708 -5.444 -3.485 -3.766 C36 A1ADS 28 A1ADS C37 C29 C 0 1 N N N N N N -16.051 5.229 24.943 -4.048 -3.143 -3.199 C37 A1ADS 29 A1ADS C39 C30 C 0 1 N N N N N N -21.347 3.840 24.019 -5.980 0.326 1.039 C39 A1ADS 30 A1ADS C40 C31 C 0 1 N N S N N N -22.835 3.393 24.229 -7.151 1.202 0.588 C40 A1ADS 31 A1ADS C41 C32 C 0 1 N N N N N N -23.697 4.415 24.870 -7.995 1.639 1.805 C41 A1ADS 32 A1ADS C42 C33 C 0 1 N N N N N N -24.992 4.348 24.052 -8.201 3.147 1.534 C42 A1ADS 33 A1ADS C44 C34 C 0 1 N N N N N N -23.347 3.145 22.828 -6.640 2.493 -0.013 C44 A1ADS 34 A1ADS F15 F1 F 0 1 N N N N N N -20.887 9.999 25.511 6.012 4.949 -0.875 F15 A1ADS 35 A1ADS N06 N1 N 0 1 N N N N N N -21.773 5.168 29.805 -0.482 -0.086 0.652 N06 A1ADS 36 A1ADS N18 N2 N 0 1 N N N N N N -19.701 6.126 32.170 3.144 -0.506 0.108 N18 A1ADS 37 A1ADS N31 N3 N 0 1 N N N N N N -21.134 3.886 26.539 -4.027 -0.911 0.242 N31 A1ADS 38 A1ADS O08 O1 O 0 1 N N N N N N -19.580 5.299 29.296 0.877 -1.808 0.319 O08 A1ADS 39 A1ADS O20 O2 O 0 1 N N N N N N -21.192 6.795 33.744 4.445 1.054 1.005 O20 A1ADS 40 A1ADS O21 O3 O 0 1 N N N N N N -19.187 5.934 34.382 5.457 -0.776 0.262 O21 A1ADS 41 A1ADS O30 O4 O 0 1 N N N N N N -21.835 5.909 27.213 -2.910 0.985 0.527 O30 A1ADS 42 A1ADS O38 O5 O 0 1 N N N N N N -16.892 4.493 25.893 -4.313 -2.430 -1.972 O38 A1ADS 43 A1ADS O43 O6 O 0 1 N N N N N N -24.655 3.590 22.780 -7.046 3.532 0.730 O43 A1ADS 44 A1ADS O45 O7 O 0 1 N N N N N N -22.718 2.704 21.908 -5.968 2.576 -1.014 O45 A1ADS 45 A1ADS H101 H1 H 0 0 N N N N N N -19.500 8.737 31.279 1.730 0.731 -1.756 H101 A1ADS 46 A1ADS H102 H2 H 0 0 N N N N N N -18.420 7.548 30.476 0.811 1.816 -0.685 H102 A1ADS 47 A1ADS H131 H3 H 0 0 N N N N N N -18.459 9.435 26.283 5.974 2.667 -2.144 H131 A1ADS 48 A1ADS H171 H4 H 0 0 N N N N N N -21.938 8.545 29.642 1.901 3.666 0.441 H171 A1ADS 49 A1ADS H222 H5 H 0 0 N N N N N N -20.677 5.822 35.869 6.699 -0.023 1.759 H222 A1ADS 50 A1ADS H221 H6 H 0 0 N N N N N N -19.049 5.253 36.373 6.893 0.734 0.160 H221 A1ADS 51 A1ADS H241 H7 H 0 0 N N N N N N -21.321 8.051 36.281 8.180 -0.361 -1.585 H241 A1ADS 52 A1ADS H261 H8 H 0 0 N N N N N N -18.468 10.907 37.685 10.692 -3.614 -0.446 H261 A1ADS 53 A1ADS H281 H9 H 0 0 N N N N N N -17.174 7.029 36.438 7.719 -2.172 2.249 H281 A1ADS 54 A1ADS H012 H10 H 0 0 N N N N N N -22.187 2.495 30.922 -1.523 -4.090 1.996 H012 A1ADS 55 A1ADS H013 H11 H 0 0 N N N N N N -23.664 1.885 31.742 -3.262 -4.460 1.922 H013 A1ADS 56 A1ADS H011 H12 H 0 0 N N N N N N -23.369 1.493 30.014 -2.506 -3.481 0.642 H011 A1ADS 57 A1ADS H021 H13 H 0 0 N N N N N N -23.874 4.385 31.051 -3.740 -1.999 2.143 H021 A1ADS 58 A1ADS H033 H14 H 0 0 N N N N N N -26.098 3.873 29.941 -2.011 -3.217 4.344 H033 A1ADS 59 A1ADS H032 H15 H 0 0 N N N N N N -25.500 2.243 29.480 -3.160 -1.874 4.551 H032 A1ADS 60 A1ADS H031 H16 H 0 0 N N N N N N -25.795 2.636 31.208 -3.755 -3.495 4.121 H031 A1ADS 61 A1ADS H042 H17 H 0 0 N N N N N N -23.736 2.857 28.343 -1.831 -0.572 2.962 H042 A1ADS 62 A1ADS H041 H18 H 0 0 N N N N N N -24.156 4.596 28.508 -0.721 -1.906 2.569 H041 A1ADS 63 A1ADS H051 H19 H 0 0 N N N N N N -21.482 3.242 29.001 -1.541 -1.839 0.201 H051 A1ADS 64 A1ADS H091 H20 H 0 0 N N N N N N -21.324 7.179 31.330 2.053 0.852 1.275 H091 A1ADS 65 A1ADS H121 H21 H 0 0 N N N N N N -17.841 8.516 28.481 4.107 1.062 -2.118 H121 A1ADS 66 A1ADS H161 H22 H 0 0 N N N N N N -22.557 9.451 27.436 3.767 5.272 0.418 H161 A1ADS 67 A1ADS H251 H23 H 0 0 N N N N N N -20.805 10.287 37.186 10.001 -1.934 -2.108 H251 A1ADS 68 A1ADS H271 H24 H 0 0 N N N N N N -16.655 9.276 37.321 9.556 -3.728 1.735 H271 A1ADS 69 A1ADS H321 H25 H 0 0 N N N N N N -20.686 5.471 25.242 -4.944 0.646 -0.822 H321 A1ADS 70 A1ADS H332 H26 H 0 0 N N N N N N -19.006 3.030 25.710 -6.348 -2.026 -0.374 H332 A1ADS 71 A1ADS H331 H27 H 0 0 N N N N N N -18.875 3.852 24.118 -7.068 -0.635 -1.221 H331 A1ADS 72 A1ADS H341 H28 H 0 0 N N N N N N -18.573 5.308 26.792 -5.096 -0.687 -2.821 H341 A1ADS 73 A1ADS H351 H29 H 0 0 N N N N N N -18.671 6.028 23.954 -7.136 -2.898 -2.522 H351 A1ADS 74 A1ADS H352 H30 H 0 0 N N N N N N -18.692 7.085 25.407 -6.836 -1.813 -3.916 H352 A1ADS 75 A1ADS H361 H31 H 0 0 N N N N N N -16.554 6.919 23.685 -5.746 -4.486 -3.459 H361 A1ADS 76 A1ADS H362 H32 H 0 0 N N N N N N -16.390 7.312 25.430 -5.446 -3.401 -4.853 H362 A1ADS 77 A1ADS H372 H33 H 0 0 N N N N N N -15.967 4.672 23.998 -3.488 -4.055 -2.995 H372 A1ADS 78 A1ADS H371 H34 H 0 0 N N N N N N -15.048 5.387 25.366 -3.500 -2.508 -3.896 H371 A1ADS 79 A1ADS H391 H35 H 0 0 N N N N N N -21.339 4.634 23.257 -6.359 -0.517 1.617 H391 A1ADS 80 A1ADS H392 H36 H 0 0 N N N N N N -20.784 2.971 23.649 -5.303 0.914 1.657 H392 A1ADS 81 A1ADS H40 H37 H 0 1 N N N N N N -22.854 2.458 24.807 -7.770 0.665 -0.131 H40 A1ADS 82 A1ADS H411 H38 H 0 0 N N N N N N -23.884 4.167 25.925 -8.951 1.114 1.824 H411 A1ADS 83 A1ADS H412 H39 H 0 0 N N N N N N -23.240 5.413 24.804 -7.447 1.483 2.734 H412 A1ADS 84 A1ADS H422 H40 H 0 0 N N N N N N -25.772 3.816 24.617 -9.123 3.311 0.978 H422 A1ADS 85 A1ADS H421 H41 H 0 0 N N N N N N -25.342 5.362 23.809 -8.215 3.704 2.471 H421 A1ADS 86 A1ADS H061 H42 H 0 0 N N N N N N -22.508 5.493 30.400 -0.601 0.877 0.672 H061 A1ADS 87 A1ADS H181 H43 H 0 0 N N N N N N -18.939 5.501 32.002 3.071 -1.377 -0.313 H181 A1ADS 88 A1ADS H311 H44 H 0 0 N N N N N N -21.069 2.910 26.746 -4.041 -1.878 0.320 H311 A1ADS 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ADS C01 C02 SING N N 1 A1ADS C02 C03 SING N N 2 A1ADS C02 C04 SING N N 3 A1ADS C04 C05 SING N N 4 A1ADS C05 N06 SING N N 5 A1ADS C05 C29 SING N N 6 A1ADS N06 C07 SING N N 7 A1ADS C07 O08 DOUB N N 8 A1ADS C07 C09 SING N N 9 A1ADS C09 C10 SING N N 10 A1ADS C09 N18 SING N N 11 A1ADS C10 C11 SING N N 12 A1ADS C11 C12 DOUB Y N 13 A1ADS C11 C17 SING Y N 14 A1ADS C12 C13 SING Y N 15 A1ADS C13 C14 DOUB Y N 16 A1ADS C14 F15 SING N N 17 A1ADS C14 C16 SING Y N 18 A1ADS C16 C17 DOUB Y N 19 A1ADS N18 C19 SING N N 20 A1ADS C19 O20 DOUB N N 21 A1ADS C19 O21 SING N N 22 A1ADS O21 C22 SING N N 23 A1ADS C22 C23 SING N N 24 A1ADS C23 C24 DOUB Y N 25 A1ADS C23 C28 SING Y N 26 A1ADS C24 C25 SING Y N 27 A1ADS C25 C26 DOUB Y N 28 A1ADS C26 C27 SING Y N 29 A1ADS C27 C28 DOUB Y N 30 A1ADS C29 O30 DOUB N N 31 A1ADS C29 N31 SING N N 32 A1ADS N31 C32 SING N N 33 A1ADS C32 C33 SING N N 34 A1ADS C32 C39 SING N N 35 A1ADS C33 C34 SING N N 36 A1ADS C34 C35 SING N N 37 A1ADS C34 O38 SING N N 38 A1ADS C35 C36 SING N N 39 A1ADS C36 C37 SING N N 40 A1ADS C37 O38 SING N N 41 A1ADS C39 C40 SING N N 42 A1ADS C40 C41 SING N N 43 A1ADS C40 C44 SING N N 44 A1ADS C41 C42 SING N N 45 A1ADS C42 O43 SING N N 46 A1ADS O43 C44 SING N N 47 A1ADS C44 O45 DOUB N N 48 A1ADS C10 H101 SING N N 49 A1ADS C10 H102 SING N N 50 A1ADS C13 H131 SING N N 51 A1ADS C17 H171 SING N N 52 A1ADS C22 H222 SING N N 53 A1ADS C22 H221 SING N N 54 A1ADS C24 H241 SING N N 55 A1ADS C26 H261 SING N N 56 A1ADS C28 H281 SING N N 57 A1ADS C01 H012 SING N N 58 A1ADS C01 H013 SING N N 59 A1ADS C01 H011 SING N N 60 A1ADS C02 H021 SING N N 61 A1ADS C03 H033 SING N N 62 A1ADS C03 H032 SING N N 63 A1ADS C03 H031 SING N N 64 A1ADS C04 H042 SING N N 65 A1ADS C04 H041 SING N N 66 A1ADS C05 H051 SING N N 67 A1ADS C09 H091 SING N N 68 A1ADS C12 H121 SING N N 69 A1ADS C16 H161 SING N N 70 A1ADS C25 H251 SING N N 71 A1ADS C27 H271 SING N N 72 A1ADS C32 H321 SING N N 73 A1ADS C33 H332 SING N N 74 A1ADS C33 H331 SING N N 75 A1ADS C34 H341 SING N N 76 A1ADS C35 H351 SING N N 77 A1ADS C35 H352 SING N N 78 A1ADS C36 H361 SING N N 79 A1ADS C36 H362 SING N N 80 A1ADS C37 H372 SING N N 81 A1ADS C37 H371 SING N N 82 A1ADS C39 H391 SING N N 83 A1ADS C39 H392 SING N N 84 A1ADS C40 H40 SING N N 85 A1ADS C41 H411 SING N N 86 A1ADS C41 H412 SING N N 87 A1ADS C42 H422 SING N N 88 A1ADS C42 H421 SING N N 89 A1ADS N06 H061 SING N N 90 A1ADS N18 H181 SING N N 91 A1ADS N31 H311 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ADS SMILES ACDLabs 12.01 "Fc1ccc(cc1)CC(NC(=O)OCc1ccccc1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCCO1)CC1CCOC1=O" A1ADS InChI InChI 1.06 "InChI=1S/C34H44FN3O7/c1-22(2)17-29(31(39)36-27(20-28-9-6-15-43-28)19-25-14-16-44-33(25)41)37-32(40)30(18-23-10-12-26(35)13-11-23)38-34(42)45-21-24-7-4-3-5-8-24/h3-5,7-8,10-13,22,25,27-30H,6,9,14-21H2,1-2H3,(H,36,39)(H,37,40)(H,38,42)/t25-,27-,28+,29+,30+/m1/s1" A1ADS InChIKey InChI 1.06 KTLVPXDSLURVFT-WJBPYKOESA-N A1ADS SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@H](Cc1ccc(F)cc1)NC(=O)OCc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCCO3)C[C@H]4CCOC4=O" A1ADS SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](Cc1ccc(F)cc1)NC(=O)OCc2ccccc2)C(=O)N[CH](C[CH]3CCCO3)C[CH]4CCOC4=O" A1ADS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@H](C[C@H]1CCOC1=O)C[C@@H]2CCCO2)NC(=O)[C@H](Cc3ccc(cc3)F)NC(=O)OCc4ccccc4" A1ADS SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCOC1=O)CC2CCCO2)NC(=O)C(Cc3ccc(cc3)F)NC(=O)OCc4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1ADS "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-{(2R)-1-[(2S)-oxolan-2-yl]-3-[(3S)-2-oxooxolan-3-yl]propan-2-yl}-L-leucinamide" A1ADS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-(4-fluorophenyl)-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{R})-1-[(3~{S})-2-oxidanylideneoxolan-3-yl]-3-[(2~{S})-oxolan-2-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ADS "Create component" 2024-01-25 RCSB A1ADS "Initial release" 2024-02-14 RCSB A1ADS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1ADS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C39 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #