data_A1ADT # _chem_comp.id A1ADT _chem_comp.name "{3-[(2R,5'R)-9',14'-diethenyl-5'-hydroxy-5',10',15',19'-tetramethyl-5-oxo-4,5-dihydro-3H-spiro[furan-2,4'-[21,22,23,24]tetraazapentacyclo[16.2.1.13,6.18,11.113,16]tetracosa[1,3(24),6,8,10,12,14,16(22),17,19]decaen]-20'-yl-kappa~4~N~21'~,N~22'~,N~23'~,N~24'~]propanoato}iron" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H32 Fe N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-01-26 _chem_comp.pdbx_modified_date 2024-03-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 632.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1ADT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8VSH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1ADT NB N1 N 0 1 N N N N N N 3.133 48.933 38.734 1.851 -1.545 0.928 NB A1ADT 1 A1ADT ND N2 N 0 1 N N N N N N 4.283 52.740 38.211 0.044 1.310 0.506 ND A1ADT 2 A1ADT C1A C1 C 0 1 N N N N N N 3.256 52.508 41.033 -1.831 -0.772 -0.619 C1A A1ADT 3 A1ADT C1B C2 C 0 1 N N N N N N 2.823 48.260 39.984 1.336 -2.745 1.223 C1B A1ADT 4 A1ADT C1C C3 C 0 1 Y N N N N N 3.721 49.332 35.805 3.556 -0.097 -1.044 C1C A1ADT 5 A1ADT C1D C4 C 0 1 N N N N N N 4.889 53.237 37.095 0.573 2.502 0.220 C1D A1ADT 6 A1ADT C2A C5 C 0 1 N N N N N N 2.911 52.418 42.466 -2.492 -1.817 -1.246 C2A A1ADT 7 A1ADT C2B C6 C 0 1 N N N N N N 2.487 46.923 39.839 2.260 -3.308 2.128 C2B A1ADT 8 A1ADT C2C C7 C 0 1 Y N N N N N 4.073 49.395 34.379 4.140 0.599 -2.096 C2C A1ADT 9 A1ADT C2D C8 C 0 1 N N R N N N 5.525 54.596 37.438 -0.296 3.522 0.920 C2D A1ADT 10 A1ADT C3A C9 C 0 1 N N N N N N 2.735 51.097 42.702 -1.722 -2.965 -1.132 C3A A1ADT 11 A1ADT C3B C10 C 0 1 N N N N N N 2.578 46.716 38.503 3.467 -2.613 1.944 C3B A1ADT 12 A1ADT C3C C11 C 0 1 Y N N N N N 4.585 50.683 34.241 3.356 1.744 -2.357 C3C A1ADT 13 A1ADT C3D C12 C 0 1 N N R N N N 4.534 55.126 38.458 -1.602 2.728 1.134 C3D A1ADT 14 A1ADT C4A C13 C 0 1 N N N N N N 2.957 50.399 41.425 -0.603 -2.650 -0.368 C4A A1ADT 15 A1ADT C4B C14 C 0 1 N N N N N N 2.976 47.964 37.831 3.182 -1.621 0.910 C4B A1ADT 16 A1ADT C4C C15 C 0 1 Y N N N N N 4.509 51.311 35.569 2.320 1.764 -1.417 C4C A1ADT 17 A1ADT C4D C16 C 0 1 N N N N N N 4.027 53.818 39.062 -1.290 1.376 0.564 C4D A1ADT 18 A1ADT CAA C17 C 0 1 N N N N N N 2.798 53.497 43.491 -3.827 -1.720 -1.938 CAA A1ADT 19 A1ADT CAB C18 C 0 1 N N N N N N 2.348 45.516 37.667 4.745 -2.836 2.643 CAB A1ADT 20 A1ADT CAC C19 C 0 1 N N N N N N 5.520 51.150 33.192 3.586 2.736 -3.424 CAC A1ADT 21 A1ADT CAD C20 C 0 1 N N N N N N 3.451 56.040 37.882 -2.771 3.403 0.404 CAD A1ADT 22 A1ADT CBA C21 C 0 1 N N N N N N 1.467 54.223 43.509 -4.948 -1.887 -0.910 CBA A1ADT 23 A1ADT CBB C22 C 0 1 N N N N N N 2.910 44.353 37.944 5.802 -2.086 2.351 CBB A1ADT 24 A1ADT CBC C23 C 0 1 N N N N N N 5.230 51.032 31.905 4.790 3.274 -3.580 CBC A1ADT 25 A1ADT CBD C24 C 0 1 N N N N N N 3.705 57.444 38.420 -3.957 3.090 1.347 CBD A1ADT 26 A1ADT CGA C25 C 0 1 N N N N N N 1.535 55.286 44.571 -6.283 -1.791 -1.602 CGA A1ADT 27 A1ADT CGD C26 C 0 1 N N N N N N 4.781 57.217 39.437 -3.314 2.622 2.636 CGD A1ADT 28 A1ADT CHA C27 C 0 1 N N N N N N 3.539 53.713 40.321 -2.153 0.451 -0.022 CHA A1ADT 29 A1ADT CHB C28 C 0 1 N N N N N N 2.870 48.997 41.257 0.222 -3.304 0.548 CHB A1ADT 30 A1ADT CHC C29 C 0 1 N N N N N N 3.174 48.181 36.391 3.964 -1.065 -0.128 CHC A1ADT 31 A1ADT CHD C30 C 0 1 N N N N N N 4.936 52.629 35.865 1.549 2.726 -0.754 CHD A1ADT 32 A1ADT CMA C31 C 0 1 N N N N N N 2.371 50.460 44.020 -2.042 -4.312 -1.727 CMA A1ADT 33 A1ADT CMB C32 C 0 1 N N N N N N 2.121 45.962 40.932 2.003 -4.432 3.099 CMB A1ADT 34 A1ADT CMC C33 C 0 1 N N N N N N 3.879 48.282 33.388 5.394 0.201 -2.830 CMC A1ADT 35 A1ADT CMD C34 C 0 1 N N N N N N 6.925 54.519 38.046 0.318 3.937 2.259 CMD A1ADT 36 A1ADT NA N3 N 0 1 N N N N N N 3.257 51.286 40.453 -0.555 -1.275 -0.495 NA A1ADT 37 A1ADT NC N4 N 0 1 Y N N N N N 3.984 50.468 36.472 2.287 0.459 -0.998 NC A1ADT 38 A1ADT O1A O1 O 0 1 N N N N N N 0.610 55.209 45.413 -7.416 -1.909 -0.893 O1A A1ADT 39 A1ADT O1D O2 O 0 1 N N N N N N 5.222 55.945 39.434 -1.976 2.681 2.528 O1D A1ADT 40 A1ADT O2A O3 O 0 1 N N N N N N 2.453 56.121 44.550 -6.333 -1.608 -2.795 O2A A1ADT 41 A1ADT O2D O4 O 0 1 N N N N N N 5.210 58.095 40.185 -3.915 2.251 3.616 O2D A1ADT 42 A1ADT OND O5 O 0 1 N N N N N N 5.563 55.441 36.271 -0.519 4.662 0.088 OND A1ADT 43 A1ADT FE FE1 FE 0 0 N N S N N N 3.691 50.915 38.472 0.902 -0.251 0.009 FE A1ADT 44 A1ADT H1 H1 H 0 1 N N N N N N 2.954 53.045 44.482 -3.917 -0.747 -2.419 H1 A1ADT 45 A1ADT H2 H2 H 0 1 N N N N N N 3.588 54.237 43.297 -3.904 -2.506 -2.690 H2 A1ADT 46 A1ADT H3 H3 H 0 1 N N N N N N 1.702 45.594 36.805 4.822 -3.609 3.393 H3 A1ADT 47 A1ADT H4 H4 H 0 1 N N N N N N 6.459 51.597 33.483 2.777 3.024 -4.077 H4 A1ADT 48 A1ADT H5 H5 H 0 1 N N N N N N 2.457 55.690 38.198 -2.610 4.478 0.322 H5 A1ADT 49 A1ADT H6 H6 H 0 1 N N N N N N 1.280 54.685 42.529 -4.857 -2.861 -0.428 H6 A1ADT 50 A1ADT H7 H7 H 0 1 N N N N N N 0.658 53.515 43.740 -4.871 -1.102 -0.158 H7 A1ADT 51 A1ADT H8 H8 H 0 1 N N N N N N 2.720 43.498 37.313 5.725 -1.313 1.601 H8 A1ADT 52 A1ADT H9 H9 H 0 1 N N N N N N 3.559 44.258 38.802 6.738 -2.250 2.864 H9 A1ADT 53 A1ADT H10 H10 H 0 1 N N N N N N 5.929 51.381 31.160 5.600 2.986 -2.927 H10 A1ADT 54 A1ADT H11 H11 H 0 1 N N N N N N 4.294 50.587 31.601 4.959 4.001 -4.361 H11 A1ADT 55 A1ADT H12 H12 H 0 1 N N N N N N 4.049 58.118 37.622 -4.549 3.988 1.523 H12 A1ADT 56 A1ADT H13 H13 H 0 1 N N N N N N 3.343 54.639 40.842 -3.201 0.712 -0.014 H13 A1ADT 57 A1ADT H14 H14 H 0 1 N N N N N N 2.834 48.404 42.159 -0.011 -4.337 0.762 H14 A1ADT 58 A1ADT H15 H15 H 0 1 N N N N N N 2.872 47.385 35.726 4.978 -1.427 -0.221 H15 A1ADT 59 A1ADT H16 H16 H 0 1 N N N N N N 5.336 53.210 35.047 1.728 3.755 -1.026 H16 A1ADT 60 A1ADT H17 H17 H 0 1 N N N N N N 3.289 50.209 44.572 -2.984 -4.254 -2.272 H17 A1ADT 61 A1ADT H18 H18 H 0 1 N N N N N N 1.767 51.163 44.613 -1.244 -4.606 -2.410 H18 A1ADT 62 A1ADT H19 H19 H 0 1 N N N N N N 1.791 49.543 43.836 -2.128 -5.050 -0.930 H19 A1ADT 63 A1ADT H20 H20 H 0 1 N N N N N N 2.150 46.480 41.902 2.225 -5.385 2.619 H20 A1ADT 64 A1ADT H21 H21 H 0 1 N N N N N N 1.107 45.573 40.754 2.641 -4.308 3.974 H21 A1ADT 65 A1ADT H22 H22 H 0 1 N N N N N N 2.837 45.127 40.941 0.957 -4.415 3.407 H22 A1ADT 66 A1ADT H23 H23 H 0 1 N N N N N N 4.781 47.653 33.362 5.133 -0.434 -3.677 H23 A1ADT 67 A1ADT H24 H24 H 0 1 N N N N N N 3.014 47.671 33.687 5.904 1.095 -3.190 H24 A1ADT 68 A1ADT H25 H25 H 0 1 N N N N N N 3.700 48.707 32.390 6.053 -0.345 -2.155 H25 A1ADT 69 A1ADT H26 H26 H 0 1 N N N N N N 6.903 53.875 38.938 1.291 4.397 2.086 H26 A1ADT 70 A1ADT H27 H27 H 0 1 N N N N N N 7.623 54.098 37.307 -0.340 4.652 2.754 H27 A1ADT 71 A1ADT H28 H28 H 0 1 N N N N N N 7.257 55.528 38.331 0.439 3.057 2.891 H28 A1ADT 72 A1ADT H29 H29 H 0 1 N N N N N N 0.709 55.901 46.057 -8.248 -1.841 -1.381 H29 A1ADT 73 A1ADT H30 H30 H 0 1 N N N N N N 5.957 56.275 36.496 0.288 5.138 -0.152 H30 A1ADT 74 A1ADT H31 H31 H 0 1 N N N N N N 3.507 56.043 36.783 -2.926 2.958 -0.579 H31 A1ADT 75 A1ADT H32 H32 H 0 1 N N N N N N 2.800 57.860 38.886 -4.579 2.301 0.925 H32 A1ADT 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1ADT CBC CAC DOUB N N 1 A1ADT CAC C3C SING N N 2 A1ADT CMC C2C SING N N 3 A1ADT C3C C2C SING Y N 4 A1ADT C3C C4C DOUB Y N 5 A1ADT C2C C1C DOUB Y N 6 A1ADT C4C CHD SING N N 7 A1ADT C4C NC SING Y N 8 A1ADT C1C CHC SING N N 9 A1ADT C1C NC SING Y N 10 A1ADT CHD C1D DOUB N N 11 A1ADT OND C2D SING N N 12 A1ADT CHC C4B DOUB N N 13 A1ADT NC FE SING N N 14 A1ADT C1D C2D SING N N 15 A1ADT C1D ND SING N N 16 A1ADT C2D CMD SING N N 17 A1ADT C2D C3D SING N N 18 A1ADT CAB CBB DOUB N N 19 A1ADT CAB C3B SING N N 20 A1ADT C4B C3B SING N N 21 A1ADT C4B NB SING N N 22 A1ADT CAD CBD SING N N 23 A1ADT CAD C3D SING N N 24 A1ADT ND FE SING N N 25 A1ADT ND C4D DOUB N N 26 A1ADT CBD CGD SING N N 27 A1ADT C3D C4D SING N N 28 A1ADT C3D O1D SING N N 29 A1ADT FE NB SING N N 30 A1ADT FE NA SING N N 31 A1ADT C3B C2B DOUB N N 32 A1ADT NB C1B DOUB N N 33 A1ADT C4D CHA SING N N 34 A1ADT O1D CGD SING N N 35 A1ADT CGD O2D DOUB N N 36 A1ADT C2B C1B SING N N 37 A1ADT C2B CMB SING N N 38 A1ADT C1B CHB SING N N 39 A1ADT CHA C1A DOUB N N 40 A1ADT NA C1A SING N N 41 A1ADT NA C4A SING N N 42 A1ADT C1A C2A SING N N 43 A1ADT CHB C4A DOUB N N 44 A1ADT C4A C3A SING N N 45 A1ADT C2A C3A DOUB N N 46 A1ADT C2A CAA SING N N 47 A1ADT C3A CMA SING N N 48 A1ADT CAA CBA SING N N 49 A1ADT CBA CGA SING N N 50 A1ADT O2A CGA DOUB N N 51 A1ADT CGA O1A SING N N 52 A1ADT CAA H1 SING N N 53 A1ADT CAA H2 SING N N 54 A1ADT CAB H3 SING N N 55 A1ADT CAC H4 SING N N 56 A1ADT CAD H5 SING N N 57 A1ADT CBA H6 SING N N 58 A1ADT CBA H7 SING N N 59 A1ADT CBB H8 SING N N 60 A1ADT CBB H9 SING N N 61 A1ADT CBC H10 SING N N 62 A1ADT CBC H11 SING N N 63 A1ADT CBD H12 SING N N 64 A1ADT CHA H13 SING N N 65 A1ADT CHB H14 SING N N 66 A1ADT CHC H15 SING N N 67 A1ADT CHD H16 SING N N 68 A1ADT CMA H17 SING N N 69 A1ADT CMA H18 SING N N 70 A1ADT CMA H19 SING N N 71 A1ADT CMB H20 SING N N 72 A1ADT CMB H21 SING N N 73 A1ADT CMB H22 SING N N 74 A1ADT CMC H23 SING N N 75 A1ADT CMC H24 SING N N 76 A1ADT CMC H25 SING N N 77 A1ADT CMD H26 SING N N 78 A1ADT CMD H27 SING N N 79 A1ADT CMD H28 SING N N 80 A1ADT O1A H29 SING N N 81 A1ADT OND H30 SING N N 82 A1ADT CAD H31 SING N N 83 A1ADT CBD H32 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1ADT SMILES ACDLabs 12.01 "O=C(O)CCC1=C(C)C2=CC3=[N+]4C(=Cc5n6c(C=C7[N+]8=C(C=C1N2[Fe]648)C1(CCC(=O)O1)C7(C)O)c(C=C)c5C)C(C=C)=C3C" A1ADT InChI InChI 1.06 "InChI=1S/C34H33N4O5.Fe/c1-7-20-17(3)23-13-24-19(5)22(9-10-31(39)40)28(37-24)16-30-34(12-11-32(41)43-34)33(6,42)29(38-30)15-27-21(8-2)18(4)25(36-27)14-26(20)35-23;/h7-8,13-16,42H,1-2,9-12H2,3-6H3,(H2-,35,36,37,38,39,40);/q-1;+4/p-1/t33-,34-;/m1./s1" A1ADT InChIKey InChI 1.06 CYBWRCIPTVPWKW-YDXXJHAFSA-M A1ADT SMILES_CANONICAL CACTVS 3.385 "CC1=C(CCC(O)=O)C2=CC3=[N@@+]4C(=Cc5n6c(C=C7C(=C(C)C8=[N@+]7[Fe@@]46[N@]2C1=C8)C=C)c(C)c5C=C)[C@@](C)(O)[C@@]39CCC(=O)O9" A1ADT SMILES CACTVS 3.385 "CC1=C(CCC(O)=O)C2=CC3=[N+]4C(=Cc5n6c(C=C7C(=C(C)C8=[N+]7[Fe]46[N]2C1=C8)C=C)c(C)c5C=C)[C](C)(O)[C]39CCC(=O)O9" A1ADT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2cc3[n+]4c(cc5c(c(c6n5[Fe]47n2c(c1CCC(=O)O)cc8[n+]7c(c6)[C@@]([C@@]89CCC(=O)O9)(C)O)C=C)C)C(=C3C)C=C" A1ADT SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2cc3[n+]4c(cc5c(c(c6n5[Fe]47n2c(c1CCC(=O)O)cc8[n+]7c(c6)C(C89CCC(=O)O9)(C)O)C=C)C)C(=C3C)C=C" # _pdbx_chem_comp_identifier.comp_id A1ADT _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "{3-[(2R,5'R,6'M,13'P,21'S,22'P,23'R,24'M)-9',14'-diethenyl-5'-hydroxy-5',10',15',19'-tetramethyl-5-oxospiro[oxolane-2,4'-[21,22,23,24]tetraazapentacyclo[16.2.1.1~3,6~.1~8,11~.1~13,16~]tetracosa[1,3(24),6,8,10,12,14,16(22),17,19]decaen]-20'-yl-kappa~4~N~21'~,N~22'~,N~23'~,N~24'~]propanoato(2-)}iron(2+)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1ADT "Create component" 2024-01-26 RCSB A1ADT "Initial release" 2024-04-03 RCSB #