data_A1AF4 # _chem_comp.id A1AF4 _chem_comp.name "Golcadomide " _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H30 F N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-27 _chem_comp.pdbx_modified_date 2025-10-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 535.567 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AF4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ARM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AF4 N1 N1 N 0 1 N N N N N N 111.206 103.629 54.477 -8.731 -0.789 -0.104 N1 A1AF4 1 A1AF4 C7 C1 C 0 1 N N N N N N 109.934 103.014 54.069 -7.293 -0.917 0.166 C7 A1AF4 2 A1AF4 C8 C2 C 0 1 N N N N N N 112.062 103.963 53.334 -8.969 -0.332 -1.481 C8 A1AF4 3 A1AF4 N2 N2 N 0 1 N N N N N N 101.667 106.487 55.997 1.233 1.657 -0.096 N2 A1AF4 4 A1AF4 C9 C3 C 0 1 N N N N N N 113.415 104.397 53.828 -10.474 -0.156 -1.701 C9 A1AF4 5 A1AF4 O1 O1 O 0 1 N N N N N N 98.963 106.277 63.543 9.243 -3.748 -0.155 O1 A1AF4 6 A1AF4 C1 C4 C 0 1 Y N N N N N 104.904 104.854 53.944 -2.590 0.433 1.704 C1 A1AF4 7 A1AF4 C5 C5 C 0 1 N N N N N N 106.772 103.192 53.644 -4.613 -0.801 0.899 C5 A1AF4 8 A1AF4 C6 C6 C 0 1 N N N N N N 109.104 103.885 53.107 -6.923 -0.742 1.650 C6 A1AF4 9 A1AF4 N3 N3 N 0 1 N N N N N N 102.261 108.241 59.976 5.196 -0.228 -0.319 N3 A1AF4 10 A1AF4 C4 C7 C 0 1 Y N N N N N 103.879 103.443 56.084 -1.990 1.264 -0.865 C4 A1AF4 11 A1AF4 O4 O2 O 0 1 N N N N N N 103.416 110.239 60.222 7.060 1.031 -0.693 O4 A1AF4 12 A1AF4 C3 C8 C 0 1 Y N N N N N 105.005 102.987 55.425 -3.101 0.475 -0.635 C3 A1AF4 13 A1AF4 O3 O3 O 0 1 N N N N N N 101.228 106.395 59.038 3.033 -0.858 0.018 O3 A1AF4 14 A1AF4 C2 C9 C 0 1 Y N N N N N 105.534 103.684 54.351 -3.401 0.059 0.649 C2 A1AF4 15 A1AF4 N4 N4 N 0 1 N N N N N N 100.934 106.058 62.491 7.926 -2.306 0.870 N4 A1AF4 16 A1AF4 N N5 N 0 1 N N N N N N 107.986 103.884 54.089 -5.775 0.057 1.168 N A1AF4 17 A1AF4 C C10 C 0 1 Y N N N N N 103.787 105.282 54.616 -1.477 1.224 1.474 C A1AF4 18 A1AF4 O O4 O 0 1 N N N N N N 113.310 105.414 54.813 -11.140 -1.389 -1.417 O A1AF4 19 A1AF4 O2 O5 O 0 1 N N N N N N 102.950 105.791 61.530 6.618 -0.845 1.878 O2 A1AF4 20 A1AF4 C10 C11 C 0 1 N N N N N N 111.978 105.901 54.858 -10.930 -1.863 -0.084 C10 A1AF4 21 A1AF4 C11 C12 C 0 1 N N N N N N 111.012 104.832 55.293 -9.430 -2.057 0.152 C11 A1AF4 22 A1AF4 C12 C13 C 0 1 N N N N N N 108.801 103.159 55.102 -6.498 0.377 -0.083 C12 A1AF4 23 A1AF4 C13 C14 C 0 1 Y N N N N N 103.243 104.615 55.689 -1.177 1.639 0.188 C13 A1AF4 24 A1AF4 C14 C15 C 0 1 N N N N N N 102.027 105.141 56.404 0.034 2.499 -0.064 C14 A1AF4 25 A1AF4 C15 C16 C 0 1 Y N N N N N 102.361 107.612 56.357 2.477 2.230 -0.315 C15 A1AF4 26 A1AF4 C16 C17 C 0 1 Y N N N N N 102.427 108.042 57.692 3.621 1.434 -0.346 C16 A1AF4 27 A1AF4 C17 C18 C 0 1 Y N N N N N 103.071 109.193 58.047 4.881 2.029 -0.570 C17 A1AF4 28 A1AF4 C18 C19 C 0 1 N N N N N N 102.976 109.352 59.517 5.859 0.921 -0.541 C18 A1AF4 29 A1AF4 C19 C20 C 0 1 N N S N N N 102.007 107.969 61.381 5.831 -1.545 -0.223 C19 A1AF4 30 A1AF4 C20 C21 C 0 1 N N N N N N 102.012 106.520 61.806 6.822 -1.546 0.910 C20 A1AF4 31 A1AF4 C21 C22 C 0 1 N N N N N N 99.789 106.739 62.764 8.221 -3.096 -0.173 C21 A1AF4 32 A1AF4 C22 C23 C 0 1 N N N N N N 99.639 108.084 62.131 7.307 -3.190 -1.366 C22 A1AF4 33 A1AF4 C23 C24 C 0 1 N N N N N N 100.972 108.810 62.071 6.555 -1.865 -1.529 C23 A1AF4 34 A1AF4 C24 C25 C 0 1 N N N N N N 101.885 107.408 58.921 3.876 -0.008 -0.190 C24 A1AF4 35 A1AF4 C25 C26 C 0 1 Y N N N N N 103.691 109.985 57.089 4.974 3.396 -0.757 C25 A1AF4 36 A1AF4 C26 C27 C 0 1 Y N N N N N 103.646 109.577 55.765 3.828 4.180 -0.724 C26 A1AF4 37 A1AF4 C27 C28 C 0 1 Y N N N N N 102.992 108.409 55.401 2.593 3.609 -0.506 C27 A1AF4 38 A1AF4 F F1 F 0 1 N N N N N N 103.180 106.419 54.210 -0.683 1.590 2.505 F A1AF4 39 A1AF4 H2 H2 H 0 1 N N N N N N 110.043 101.980 53.709 -6.850 -1.799 -0.297 H2 A1AF4 40 A1AF4 H3 H3 H 0 1 N N N N N N 111.603 104.780 52.759 -8.464 0.620 -1.641 H3 A1AF4 41 A1AF4 H4 H4 H 0 1 N N N N N N 112.174 103.079 52.689 -8.583 -1.072 -2.182 H4 A1AF4 42 A1AF4 H5 H5 H 0 1 N N N N N N 100.734 106.628 56.327 1.156 0.699 0.036 H5 A1AF4 43 A1AF4 H6 H6 H 0 1 N N N N N N 113.931 103.529 54.265 -10.850 0.623 -1.036 H6 A1AF4 44 A1AF4 H7 H7 H 0 1 N N N N N N 113.999 104.782 52.979 -10.660 0.128 -2.737 H7 A1AF4 45 A1AF4 H8 H8 H 0 1 N N N N N N 105.289 105.420 53.109 -2.827 0.112 2.708 H8 A1AF4 46 A1AF4 H9 H9 H 0 1 N N N N N N 106.649 103.355 52.563 -4.810 -1.415 0.020 H9 A1AF4 47 A1AF4 H10 H10 H 0 1 N N N N N N 106.887 102.116 53.842 -4.430 -1.445 1.759 H10 A1AF4 48 A1AF4 H11 H11 H 0 1 N N N N N N 109.534 104.879 52.914 -7.652 -0.164 2.219 H11 A1AF4 49 A1AF4 H12 H12 H 0 1 N N N N N N 108.864 103.397 52.151 -6.636 -1.670 2.144 H12 A1AF4 50 A1AF4 H13 H13 H 0 1 N N N N N N 103.487 102.881 56.919 -1.757 1.588 -1.869 H13 A1AF4 51 A1AF4 H14 H14 H 0 1 N N N N N N 105.480 102.074 55.752 -3.735 0.182 -1.459 H14 A1AF4 52 A1AF4 H15 H15 H 0 1 N N N N N N 100.988 105.119 62.830 8.538 -2.280 1.622 H15 A1AF4 53 A1AF4 H17 H17 H 0 1 N N N N N N 111.928 106.738 55.569 -11.319 -1.135 0.627 H17 A1AF4 54 A1AF4 H18 H18 H 0 1 N N N N N N 111.693 106.254 53.856 -11.445 -2.814 0.049 H18 A1AF4 55 A1AF4 H19 H19 H 0 1 N N N N N N 109.982 105.197 55.167 -9.051 -2.824 -0.523 H19 A1AF4 56 A1AF4 H20 H20 H 0 1 N N N N N N 111.188 104.588 56.351 -9.260 -2.364 1.184 H20 A1AF4 57 A1AF4 H21 H21 H 0 1 N N N N N N 108.366 102.204 55.431 -5.871 0.343 -0.974 H21 A1AF4 58 A1AF4 H22 H22 H 0 1 N N N N N N 109.068 103.763 55.982 -7.102 1.283 -0.021 H22 A1AF4 59 A1AF4 H23 H23 H 0 1 N N N N N N 101.180 104.472 56.192 0.129 3.236 0.734 H23 A1AF4 60 A1AF4 H24 H24 H 0 1 N N N N N N 102.230 105.144 57.485 -0.076 3.011 -1.020 H24 A1AF4 61 A1AF4 H25 H25 H 0 1 N N N N N N 102.932 108.335 61.851 5.069 -2.304 -0.041 H25 A1AF4 62 A1AF4 H26 H26 H 0 1 N N N N N N 98.930 108.682 62.722 7.897 -3.386 -2.262 H26 A1AF4 63 A1AF4 H27 H27 H 0 1 N N N N N N 99.251 107.959 61.109 6.593 -4.000 -1.216 H27 A1AF4 64 A1AF4 H28 H28 H 0 1 N N N N N N 101.310 109.029 63.095 5.830 -1.947 -2.339 H28 A1AF4 65 A1AF4 H29 H29 H 0 1 N N N N N N 100.845 109.752 61.517 7.270 -1.074 -1.754 H29 A1AF4 66 A1AF4 H30 H30 H 0 1 N N N N N N 104.196 110.897 57.369 5.937 3.854 -0.927 H30 A1AF4 67 A1AF4 H31 H31 H 0 1 N N N N N N 104.127 110.177 55.006 3.905 5.247 -0.870 H31 A1AF4 68 A1AF4 H32 H32 H 0 1 N N N N N N 102.971 108.112 54.363 1.710 4.230 -0.483 H32 A1AF4 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AF4 C6 C7 SING N N 1 A1AF4 C6 N SING N N 2 A1AF4 C8 C9 SING N N 3 A1AF4 C8 N1 SING N N 4 A1AF4 C5 N SING N N 5 A1AF4 C5 C2 SING N N 6 A1AF4 C9 O SING N N 7 A1AF4 C1 C2 DOUB Y N 8 A1AF4 C1 C SING Y N 9 A1AF4 C7 N1 SING N N 10 A1AF4 C7 C12 SING N N 11 A1AF4 N C12 SING N N 12 A1AF4 F C SING N N 13 A1AF4 C2 C3 SING Y N 14 A1AF4 N1 C11 SING N N 15 A1AF4 C C13 DOUB Y N 16 A1AF4 O C10 SING N N 17 A1AF4 C10 C11 SING N N 18 A1AF4 C27 C26 DOUB Y N 19 A1AF4 C27 C15 SING Y N 20 A1AF4 C3 C4 DOUB Y N 21 A1AF4 C13 C4 SING Y N 22 A1AF4 C13 C14 SING N N 23 A1AF4 C26 C25 SING Y N 24 A1AF4 N2 C15 SING N N 25 A1AF4 N2 C14 SING N N 26 A1AF4 C15 C16 DOUB Y N 27 A1AF4 C25 C17 DOUB Y N 28 A1AF4 C16 C17 SING Y N 29 A1AF4 C16 C24 SING N N 30 A1AF4 C17 C18 SING N N 31 A1AF4 C24 O3 DOUB N N 32 A1AF4 C24 N3 SING N N 33 A1AF4 C18 N3 SING N N 34 A1AF4 C18 O4 DOUB N N 35 A1AF4 N3 C19 SING N N 36 A1AF4 C19 C20 SING N N 37 A1AF4 C19 C23 SING N N 38 A1AF4 O2 C20 DOUB N N 39 A1AF4 C20 N4 SING N N 40 A1AF4 C23 C22 SING N N 41 A1AF4 C22 C21 SING N N 42 A1AF4 N4 C21 SING N N 43 A1AF4 C21 O1 DOUB N N 44 A1AF4 C7 H2 SING N N 45 A1AF4 C8 H3 SING N N 46 A1AF4 C8 H4 SING N N 47 A1AF4 N2 H5 SING N N 48 A1AF4 C9 H6 SING N N 49 A1AF4 C9 H7 SING N N 50 A1AF4 C1 H8 SING N N 51 A1AF4 C5 H9 SING N N 52 A1AF4 C5 H10 SING N N 53 A1AF4 C6 H11 SING N N 54 A1AF4 C6 H12 SING N N 55 A1AF4 C4 H13 SING N N 56 A1AF4 C3 H14 SING N N 57 A1AF4 N4 H15 SING N N 58 A1AF4 C10 H17 SING N N 59 A1AF4 C10 H18 SING N N 60 A1AF4 C11 H19 SING N N 61 A1AF4 C11 H20 SING N N 62 A1AF4 C12 H21 SING N N 63 A1AF4 C12 H22 SING N N 64 A1AF4 C14 H23 SING N N 65 A1AF4 C14 H24 SING N N 66 A1AF4 C19 H25 SING N N 67 A1AF4 C22 H26 SING N N 68 A1AF4 C22 H27 SING N N 69 A1AF4 C23 H28 SING N N 70 A1AF4 C23 H29 SING N N 71 A1AF4 C25 H30 SING N N 72 A1AF4 C26 H31 SING N N 73 A1AF4 C27 H32 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AF4 SMILES ACDLabs 12.01 "O=C1NC(=O)CCC1N1C(=O)c2cccc(NCc3ccc(cc3F)CN3CC(C3)N3CCOCC3)c2C1=O" A1AF4 InChI InChI 1.06 "InChI=1S/C28H30FN5O5/c29-21-12-17(14-32-15-19(16-32)33-8-10-39-11-9-33)4-5-18(21)13-30-22-3-1-2-20-25(22)28(38)34(27(20)37)23-6-7-24(35)31-26(23)36/h1-5,12,19,23,30H,6-11,13-16H2,(H,31,35,36)/t23-/m0/s1" A1AF4 InChIKey InChI 1.06 NZYDBVQXOGPDDU-QHCPKHFHSA-N A1AF4 SMILES_CANONICAL CACTVS 3.385 "Fc1cc(CN2CC(C2)N3CCOCC3)ccc1CNc4cccc5C(=O)N([C@H]6CCC(=O)NC6=O)C(=O)c45" A1AF4 SMILES CACTVS 3.385 "Fc1cc(CN2CC(C2)N3CCOCC3)ccc1CNc4cccc5C(=O)N([CH]6CCC(=O)NC6=O)C(=O)c45" A1AF4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCc3ccc(cc3F)CN4CC(C4)N5CCOCC5)C(=O)N(C2=O)[C@H]6CCC(=O)NC6=O" A1AF4 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCc3ccc(cc3F)CN4CC(C4)N5CCOCC5)C(=O)N(C2=O)C6CCC(=O)NC6=O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AF4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(3S)-2,6-dioxopiperidin-3-yl]-4-{[(2-fluoro-4-{[3-(morpholin-4-yl)azetidin-1-yl]methyl}phenyl)methyl]amino}-1H-isoindole-1,3(2H)-dione" A1AF4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(3~{S})-2,6-bis(oxidanylidene)piperidin-3-yl]-4-[[2-fluoranyl-4-[(3-morpholin-4-ylazetidin-1-yl)methyl]phenyl]methylamino]isoindole-1,3-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AF4 "Create component" 2024-02-27 RCSB A1AF4 "Initial release" 2025-10-15 RCSB #