data_A1AF8 # _chem_comp.id A1AF8 _chem_comp.name "7-{(4S)-3-[(3R)-3-cyclohexyl-3-hydroxypropyl]-2,5-dioxoimidazolidin-4-yl}heptanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H32 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-28 _chem_comp.pdbx_modified_date 2025-05-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 368.468 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AF8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AF8 C10 C1 C 0 1 N N N N N N ? ? ? -6.516 1.002 -0.771 C10 A1AF8 1 A1AF8 C15 C2 C 0 1 N N N N N N ? ? ? 1.253 -0.092 -0.339 C15 A1AF8 2 A1AF8 C17 C3 C 0 1 N N R N N N ? ? ? 3.332 1.257 -0.021 C17 A1AF8 3 A1AF8 C20 C4 C 0 1 N N N N N N ? ? ? 5.409 2.601 0.330 C20 A1AF8 4 A1AF8 C21 C5 C 0 1 N N N N N N ? ? ? 6.912 2.529 0.608 C21 A1AF8 5 A1AF8 C22 C6 C 0 1 N N N N N N ? ? ? 7.602 1.755 -0.517 C22 A1AF8 6 A1AF8 C24 C7 C 0 1 N N N N N N ? ? ? 5.525 0.411 -0.867 C24 A1AF8 7 A1AF8 C02 C8 C 0 1 N N N N N N ? ? ? -0.370 -3.372 0.627 C02 A1AF8 8 A1AF8 C04 C9 C 0 1 N N S N N N ? ? ? 0.104 -1.997 1.055 C04 A1AF8 9 A1AF8 C05 C10 C 0 1 N N N N N N ? ? ? -1.069 -1.158 1.564 C05 A1AF8 10 A1AF8 C06 C11 C 0 1 N N N N N N ? ? ? -2.121 -1.030 0.460 C06 A1AF8 11 A1AF8 C07 C12 C 0 1 N N N N N N ? ? ? -3.239 -0.094 0.927 C07 A1AF8 12 A1AF8 C08 C13 C 0 1 N N N N N N ? ? ? -4.346 -0.057 -0.128 C08 A1AF8 13 A1AF8 C09 C14 C 0 1 N N N N N N ? ? ? -5.408 0.964 0.284 C09 A1AF8 14 A1AF8 C11 C15 C 0 1 N N N N N N ? ? ? -7.562 2.008 -0.365 C11 A1AF8 15 A1AF8 C16 C16 C 0 1 N N N N N N ? ? ? 2.733 -0.150 0.044 C16 A1AF8 16 A1AF8 C19 C17 C 0 1 N N N N N N ? ? ? 4.835 1.185 0.258 C19 A1AF8 17 A1AF8 C23 C18 C 0 1 N N N N N N ? ? ? 7.028 0.339 -0.589 C23 A1AF8 18 A1AF8 C25 C19 C 0 1 N N N N N N ? ? ? 0.505 -2.352 -1.142 C25 A1AF8 19 A1AF8 N03 N1 N 0 1 N N N N N N ? ? ? -0.078 -3.466 -0.686 N03 A1AF8 20 A1AF8 N14 N2 N 0 1 N N N N N N ? ? ? 0.656 -1.421 -0.183 N14 A1AF8 21 A1AF8 O01 O1 O 0 1 N N N N N N ? ? ? -0.898 -4.214 1.321 O01 A1AF8 22 A1AF8 O12 O2 O 0 1 N N N N N N ? ? ? -8.635 2.212 -1.145 O12 A1AF8 23 A1AF8 O13 O3 O 0 1 N N N N N N ? ? ? -7.435 2.630 0.663 O13 A1AF8 24 A1AF8 O18 O4 O 0 1 N N N N N N ? ? ? 2.705 2.087 0.959 O18 A1AF8 25 A1AF8 O26 O5 O 0 1 N N N N N N ? ? ? 0.859 -2.198 -2.295 O26 A1AF8 26 A1AF8 H1 H1 H 0 1 N N N N N N ? ? ? -6.091 1.288 -1.733 H1 A1AF8 27 A1AF8 H2 H2 H 0 1 N N N N N N ? ? ? -6.972 0.016 -0.854 H2 A1AF8 28 A1AF8 H3 H3 H 0 1 N N N N N N ? ? ? 0.738 0.617 0.309 H3 A1AF8 29 A1AF8 H4 H4 H 0 1 N N N N N N ? ? ? 1.159 0.229 -1.377 H4 A1AF8 30 A1AF8 H5 H5 H 0 1 N N N N N N ? ? ? 3.166 1.677 -1.013 H5 A1AF8 31 A1AF8 H6 H6 H 0 1 N N N N N N ? ? ? 4.917 3.152 1.131 H6 A1AF8 32 A1AF8 H7 H7 H 0 1 N N N N N N ? ? ? 5.239 3.111 -0.619 H7 A1AF8 33 A1AF8 H8 H8 H 0 1 N N N N N N ? ? ? 7.320 3.538 0.660 H8 A1AF8 34 A1AF8 H9 H9 H 0 1 N N N N N N ? ? ? 7.081 2.019 1.557 H9 A1AF8 35 A1AF8 H10 H10 H 0 1 N N N N N N ? ? ? 7.432 2.265 -1.465 H10 A1AF8 36 A1AF8 H11 H11 H 0 1 N N N N N N ? ? ? 8.673 1.704 -0.319 H11 A1AF8 37 A1AF8 H12 H12 H 0 1 N N N N N N ? ? ? 5.117 -0.598 -0.919 H12 A1AF8 38 A1AF8 H13 H13 H 0 1 N N N N N N ? ? ? 5.356 0.921 -1.816 H13 A1AF8 39 A1AF8 H14 H14 H 0 1 N N N N N N ? ? ? 0.876 -2.079 1.820 H14 A1AF8 40 A1AF8 H15 H15 H 0 1 N N N N N N ? ? ? -1.512 -1.642 2.434 H15 A1AF8 41 A1AF8 H16 H16 H 0 1 N N N N N N ? ? ? -0.712 -0.166 1.842 H16 A1AF8 42 A1AF8 H17 H17 H 0 1 N N N N N N ? ? ? -1.658 -0.622 -0.438 H17 A1AF8 43 A1AF8 H18 H18 H 0 1 N N N N N N ? ? ? -2.538 -2.013 0.240 H18 A1AF8 44 A1AF8 H19 H19 H 0 1 N N N N N N ? ? ? -3.647 -0.458 1.870 H19 A1AF8 45 A1AF8 H20 H20 H 0 1 N N N N N N ? ? ? -2.837 0.909 1.069 H20 A1AF8 46 A1AF8 H21 H21 H 0 1 N N N N N N ? ? ? -3.921 0.229 -1.090 H21 A1AF8 47 A1AF8 H22 H22 H 0 1 N N N N N N ? ? ? -4.802 -1.043 -0.211 H22 A1AF8 48 A1AF8 H23 H23 H 0 1 N N N N N N ? ? ? -4.952 1.951 0.367 H23 A1AF8 49 A1AF8 H24 H24 H 0 1 N N N N N N ? ? ? -5.833 0.678 1.246 H24 A1AF8 50 A1AF8 H25 H25 H 0 1 N N N N N N ? ? ? 2.832 -0.540 1.057 H25 A1AF8 51 A1AF8 H26 H26 H 0 1 N N N N N N ? ? ? 3.263 -0.802 -0.650 H26 A1AF8 52 A1AF8 H27 H27 H 0 1 N N N N N N ? ? ? 5.005 0.675 1.206 H27 A1AF8 53 A1AF8 H28 H28 H 0 1 N N N N N N ? ? ? 7.520 -0.212 -1.390 H28 A1AF8 54 A1AF8 H29 H29 H 0 1 N N N N N N ? ? ? 7.198 -0.170 0.360 H29 A1AF8 55 A1AF8 H30 H30 H 0 1 N N N N N N ? ? ? -0.268 -4.245 -1.232 H30 A1AF8 56 A1AF8 H31 H31 H 0 1 N N N N N N ? ? ? -9.280 2.867 -0.843 H31 A1AF8 57 A1AF8 H32 H32 H 0 1 N N N N N N ? ? ? 2.813 1.773 1.868 H32 A1AF8 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AF8 O18 C17 SING N N 1 A1AF8 C20 C21 SING N N 2 A1AF8 C20 C19 SING N N 3 A1AF8 C21 C22 SING N N 4 A1AF8 O26 C25 DOUB N N 5 A1AF8 C19 C17 SING N N 6 A1AF8 C19 C24 SING N N 7 A1AF8 C17 C16 SING N N 8 A1AF8 C16 C15 SING N N 9 A1AF8 C25 N14 SING N N 10 A1AF8 C25 N03 SING N N 11 A1AF8 C22 C23 SING N N 12 A1AF8 C15 N14 SING N N 13 A1AF8 C24 C23 SING N N 14 A1AF8 N14 C04 SING N N 15 A1AF8 N03 C02 SING N N 16 A1AF8 C04 C02 SING N N 17 A1AF8 C04 C05 SING N N 18 A1AF8 C02 O01 DOUB N N 19 A1AF8 C05 C06 SING N N 20 A1AF8 C06 C07 SING N N 21 A1AF8 C07 C08 SING N N 22 A1AF8 C09 C08 SING N N 23 A1AF8 C09 C10 SING N N 24 A1AF8 O13 C11 DOUB N N 25 A1AF8 C10 C11 SING N N 26 A1AF8 C11 O12 SING N N 27 A1AF8 C10 H1 SING N N 28 A1AF8 C10 H2 SING N N 29 A1AF8 C15 H3 SING N N 30 A1AF8 C15 H4 SING N N 31 A1AF8 C17 H5 SING N N 32 A1AF8 C20 H6 SING N N 33 A1AF8 C20 H7 SING N N 34 A1AF8 C21 H8 SING N N 35 A1AF8 C21 H9 SING N N 36 A1AF8 C22 H10 SING N N 37 A1AF8 C22 H11 SING N N 38 A1AF8 C24 H12 SING N N 39 A1AF8 C24 H13 SING N N 40 A1AF8 C04 H14 SING N N 41 A1AF8 C05 H15 SING N N 42 A1AF8 C05 H16 SING N N 43 A1AF8 C06 H17 SING N N 44 A1AF8 C06 H18 SING N N 45 A1AF8 C07 H19 SING N N 46 A1AF8 C07 H20 SING N N 47 A1AF8 C08 H21 SING N N 48 A1AF8 C08 H22 SING N N 49 A1AF8 C09 H23 SING N N 50 A1AF8 C09 H24 SING N N 51 A1AF8 C16 H25 SING N N 52 A1AF8 C16 H26 SING N N 53 A1AF8 C19 H27 SING N N 54 A1AF8 C23 H28 SING N N 55 A1AF8 C23 H29 SING N N 56 A1AF8 N03 H30 SING N N 57 A1AF8 O12 H31 SING N N 58 A1AF8 O18 H32 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AF8 SMILES ACDLabs 12.01 "OC(CCN1C(=O)NC(=O)C1CCCCCCC(=O)O)C1CCCCC1" A1AF8 InChI InChI 1.06 "InChI=1S/C19H32N2O5/c22-16(14-8-4-3-5-9-14)12-13-21-15(18(25)20-19(21)26)10-6-1-2-7-11-17(23)24/h14-16,22H,1-13H2,(H,23,24)(H,20,25,26)/t15-,16+/m0/s1" A1AF8 InChIKey InChI 1.06 ZIDQIOZJEJFMOH-JKSUJKDBSA-N A1AF8 SMILES_CANONICAL CACTVS 3.385 "O[C@H](CCN1[C@@H](CCCCCCC(O)=O)C(=O)NC1=O)C2CCCCC2" A1AF8 SMILES CACTVS 3.385 "O[CH](CCN1[CH](CCCCCCC(O)=O)C(=O)NC1=O)C2CCCCC2" A1AF8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)[C@@H](CCN2[C@H](C(=O)NC2=O)CCCCCCC(=O)O)O" A1AF8 SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)C(CCN2C(C(=O)NC2=O)CCCCCCC(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AF8 "SYSTEMATIC NAME" ACDLabs 12.01 "7-{(4S)-3-[(3R)-3-cyclohexyl-3-hydroxypropyl]-2,5-dioxoimidazolidin-4-yl}heptanoic acid" A1AF8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[(4~{S})-3-[(3~{R})-3-cyclohexyl-3-oxidanyl-propyl]-2,5-bis(oxidanylidene)imidazolidin-4-yl]heptanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AF8 "Create component" 2024-02-28 RCSB A1AF8 "Modify coordinates" 2025-05-19 RCSB A1AF8 "Initial release" 2025-05-28 RCSB #