data_A1AFD # _chem_comp.id A1AFD _chem_comp.name "(5-bromopyridin-3-yl){4-[(S)-(4-chlorophenyl)(phenyl)methyl]piperazin-1-yl}methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H21 Br Cl N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-23 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 470.789 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AFD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8W1T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AFD C1 C1 C 0 1 N N S N N N -19.510 2.402 -2.392 2.862 -0.745 0.806 C1 A1AFD 1 A1AFD C2 C2 C 0 1 Y N N N N N -18.893 1.625 -3.545 3.492 0.600 0.550 C2 A1AFD 2 A1AFD C3 C3 C 0 1 Y N N N N N -19.604 0.613 -4.180 3.990 1.342 1.605 C3 A1AFD 3 A1AFD C4 C4 C 0 1 Y N N N N N -19.042 -0.098 -5.221 4.568 2.575 1.370 C4 A1AFD 4 A1AFD C5 C5 C 0 1 Y N N N N N -17.767 0.206 -5.628 4.647 3.068 0.080 C5 A1AFD 5 A1AFD C6 C6 C 0 1 Y N N N N N -17.039 1.199 -5.022 4.148 2.325 -0.975 C6 A1AFD 6 A1AFD C7 C7 C 0 1 Y N N N N N -17.606 1.910 -3.985 3.576 1.089 -0.740 C7 A1AFD 7 A1AFD C8 C8 C 0 1 Y N N N N N -20.248 3.622 -2.919 3.866 -1.832 0.521 C8 A1AFD 8 A1AFD C11 C9 C 0 1 Y N N N N N -21.603 5.862 -3.867 5.699 -3.834 -0.003 C11 A1AFD 9 A1AFD C21 C10 C 0 1 N N N N N N -16.792 2.944 2.409 -2.261 -1.596 -0.765 C21 A1AFD 10 A1AFD C10 C11 C 0 1 Y N N N N N -20.232 5.795 -3.962 5.132 -3.126 -1.046 C10 A1AFD 11 A1AFD C12 C12 C 0 1 Y N N N N N -22.302 4.822 -3.304 5.353 -3.538 1.302 C12 A1AFD 12 A1AFD C13 C13 C 0 1 Y N N N N N -21.629 3.707 -2.829 4.433 -2.540 1.564 C13 A1AFD 13 A1AFD C16 C14 C 0 1 N N N N N N -19.029 3.594 -0.316 1.120 -2.258 0.072 C16 A1AFD 14 A1AFD C17 C15 C 0 1 N N N N N N -17.906 4.097 0.563 0.025 -2.456 -0.982 C17 A1AFD 15 A1AFD C19 C16 C 0 1 N N N N N N -16.728 1.991 0.105 -0.424 0.025 -0.862 C19 A1AFD 16 A1AFD C20 C17 C 0 1 N N N N N N -17.904 1.590 -0.756 0.689 0.125 0.187 C20 A1AFD 17 A1AFD C23 C18 C 0 1 Y N N N N N -15.973 1.794 2.927 -3.223 -0.473 -0.772 C23 A1AFD 18 A1AFD C24 C19 C 0 1 Y N N N N N -14.647 1.599 2.564 -2.959 0.682 -1.508 C24 A1AFD 19 A1AFD C26 C20 C 0 1 Y N N N N N -14.458 -0.280 3.866 -4.944 1.638 -0.834 C26 A1AFD 20 A1AFD C27 C21 C 0 1 Y N N N N N -15.763 -0.164 4.281 -5.283 0.525 -0.083 C27 A1AFD 21 A1AFD C28 C22 C 0 1 Y N N N N N -16.536 0.876 3.817 -4.416 -0.554 -0.044 C28 A1AFD 22 A1AFD C9 C23 C 0 1 Y N N N N N -19.557 4.681 -3.489 4.215 -2.125 -0.784 C9 A1AFD 23 A1AFD N15 N1 N 0 1 N N N N N N -18.486 2.771 -1.394 1.695 -0.914 -0.070 N15 A1AFD 24 A1AFD N18 N2 N 0 1 N N N N N N -17.119 2.986 1.105 -0.939 -1.352 -0.866 N18 A1AFD 25 A1AFD N25 N3 N 0 1 Y N N N N N -13.900 0.580 3.017 -3.815 1.683 -1.514 N25 A1AFD 26 A1AFD O22 O1 O 0 1 N N N N N N -17.144 3.822 3.190 -2.662 -2.740 -0.669 O22 A1AFD 27 A1AFD BR29 BR1 BR 0 0 N N N N N N -16.480 -1.429 5.487 -6.910 0.479 0.878 BR29 A1AFD 28 A1AFD CL14 CL1 CL 0 0 N N N N N N -17.050 -0.691 -6.936 5.372 4.617 -0.215 CL14 A1AFD 29 A1AFD H1 H1 H 0 1 N N N N N N -20.248 1.748 -1.904 2.547 -0.806 1.848 H1 A1AFD 30 A1AFD H2 H2 H 0 1 N N N N N N -20.607 0.381 -3.855 3.928 0.957 2.612 H2 A1AFD 31 A1AFD H3 H3 H 0 1 N N N N N N -19.599 -0.884 -5.709 4.957 3.155 2.195 H3 A1AFD 32 A1AFD H4 H4 H 0 1 N N N N N N -16.035 1.421 -5.353 4.210 2.709 -1.983 H4 A1AFD 33 A1AFD H5 H5 H 0 1 N N N N N N -17.042 2.699 -3.509 3.186 0.509 -1.564 H5 A1AFD 34 A1AFD H6 H6 H 0 1 N N N N N N -22.129 6.731 -4.234 6.419 -4.613 -0.208 H6 A1AFD 35 A1AFD H7 H7 H 0 1 N N N N N N -19.681 6.611 -4.406 5.402 -3.357 -2.066 H7 A1AFD 36 A1AFD H8 H8 H 0 1 N N N N N N -23.378 4.873 -3.231 5.797 -4.091 2.117 H8 A1AFD 37 A1AFD H9 H9 H 0 1 N N N N N N -22.186 2.896 -2.384 4.157 -2.314 2.583 H9 A1AFD 38 A1AFD H10 H10 H 0 1 N N N N N N -19.567 4.451 -0.747 0.691 -2.367 1.068 H10 A1AFD 39 A1AFD H11 H11 H 0 1 N N N N N N -19.723 2.992 0.288 1.902 -3.005 -0.071 H11 A1AFD 40 A1AFD H12 H12 H 0 1 N N N N N N -17.247 4.746 -0.033 0.470 -2.451 -1.977 H12 A1AFD 41 A1AFD H13 H13 H 0 1 N N N N N N -18.334 4.674 1.396 -0.482 -3.405 -0.809 H13 A1AFD 42 A1AFD H14 H14 H 0 1 N N N N N N -16.339 1.100 0.619 -1.228 0.717 -0.610 H14 A1AFD 43 A1AFD H15 H15 H 0 1 N N N N N N -15.942 2.417 -0.536 -0.026 0.270 -1.846 H15 A1AFD 44 A1AFD H16 H16 H 0 1 N N N N N N -18.665 1.103 -0.128 1.158 1.108 0.128 H16 A1AFD 45 A1AFD H17 H17 H 0 1 N N N N N N -17.564 0.888 -1.532 0.265 -0.016 1.181 H17 A1AFD 46 A1AFD H18 H18 H 0 1 N N N N N N -14.194 2.303 1.882 -2.044 0.757 -2.077 H18 A1AFD 47 A1AFD H19 H19 H 0 1 N N N N N N -13.863 -1.099 4.243 -5.618 2.481 -0.867 H19 A1AFD 48 A1AFD H20 H20 H 0 1 N N N N N N -17.562 0.981 4.136 -4.655 -1.435 0.533 H20 A1AFD 49 A1AFD H21 H21 H 0 1 N N N N N N -18.481 4.637 -3.565 3.772 -1.571 -1.599 H21 A1AFD 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AFD CL14 C5 SING N N 1 A1AFD C5 C4 DOUB Y N 2 A1AFD C5 C6 SING Y N 3 A1AFD C4 C3 SING Y N 4 A1AFD C6 C7 DOUB Y N 5 A1AFD C3 C2 DOUB Y N 6 A1AFD C7 C2 SING Y N 7 A1AFD C10 C11 DOUB Y N 8 A1AFD C10 C9 SING Y N 9 A1AFD C11 C12 SING Y N 10 A1AFD C2 C1 SING N N 11 A1AFD C9 C8 DOUB Y N 12 A1AFD C12 C13 DOUB Y N 13 A1AFD C8 C13 SING Y N 14 A1AFD C8 C1 SING N N 15 A1AFD C1 N15 SING N N 16 A1AFD N15 C20 SING N N 17 A1AFD N15 C16 SING N N 18 A1AFD C20 C19 SING N N 19 A1AFD C16 C17 SING N N 20 A1AFD C19 N18 SING N N 21 A1AFD C17 N18 SING N N 22 A1AFD N18 C21 SING N N 23 A1AFD C21 C23 SING N N 24 A1AFD C21 O22 DOUB N N 25 A1AFD C24 C23 DOUB Y N 26 A1AFD C24 N25 SING Y N 27 A1AFD C23 C28 SING Y N 28 A1AFD N25 C26 DOUB Y N 29 A1AFD C28 C27 DOUB Y N 30 A1AFD C26 C27 SING Y N 31 A1AFD C27 BR29 SING N N 32 A1AFD C1 H1 SING N N 33 A1AFD C3 H2 SING N N 34 A1AFD C4 H3 SING N N 35 A1AFD C6 H4 SING N N 36 A1AFD C7 H5 SING N N 37 A1AFD C11 H6 SING N N 38 A1AFD C10 H7 SING N N 39 A1AFD C12 H8 SING N N 40 A1AFD C13 H9 SING N N 41 A1AFD C16 H10 SING N N 42 A1AFD C16 H11 SING N N 43 A1AFD C17 H12 SING N N 44 A1AFD C17 H13 SING N N 45 A1AFD C19 H14 SING N N 46 A1AFD C19 H15 SING N N 47 A1AFD C20 H16 SING N N 48 A1AFD C20 H17 SING N N 49 A1AFD C24 H18 SING N N 50 A1AFD C26 H19 SING N N 51 A1AFD C28 H20 SING N N 52 A1AFD C9 H21 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AFD SMILES ACDLabs 12.01 "Brc1cc(cnc1)C(=O)N1CCN(CC1)C(c1ccc(Cl)cc1)c1ccccc1" A1AFD InChI InChI 1.06 "InChI=1S/C23H21BrClN3O/c24-20-14-19(15-26-16-20)23(29)28-12-10-27(11-13-28)22(17-4-2-1-3-5-17)18-6-8-21(25)9-7-18/h1-9,14-16,22H,10-13H2/t22-/m0/s1" A1AFD InChIKey InChI 1.06 HUHIPWIDNVSBFL-QFIPXVFZSA-N A1AFD SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(cc1)[C@@H](N2CCN(CC2)C(=O)c3cncc(Br)c3)c4ccccc4" A1AFD SMILES CACTVS 3.385 "Clc1ccc(cc1)[CH](N2CCN(CC2)C(=O)c3cncc(Br)c3)c4ccccc4" A1AFD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@@H](c2ccc(cc2)Cl)N3CCN(CC3)C(=O)c4cc(cnc4)Br" A1AFD SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(c2ccc(cc2)Cl)N3CCN(CC3)C(=O)c4cc(cnc4)Br" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AFD "SYSTEMATIC NAME" ACDLabs 12.01 "(5-bromopyridin-3-yl){4-[(S)-(4-chlorophenyl)(phenyl)methyl]piperazin-1-yl}methanone" A1AFD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5-bromanylpyridin-3-yl)-[4-[(~{S})-(4-chlorophenyl)-phenyl-methyl]piperazin-1-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AFD "Create component" 2024-02-23 RCSB A1AFD "Initial release" 2024-11-20 RCSB #