data_A1AFE # _chem_comp.id A1AFE _chem_comp.name "11-[1-(1H-pyrrolo[3,2-c]pyridine-7-carbonyl)piperidin-4-ylidene]-6,11-dihydro-5H-5lambda~6~-dibenzo[b,e]thiepine-5,5-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H23 N3 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms NZ-804 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-23 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.555 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AFE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8W1U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AFE C02 C1 C 0 1 N N N N N N -1.802 1.309 17.942 3.220 -1.369 0.695 C02 A1AFE 1 A1AFE C04 C2 C 0 1 N N N N N N -3.684 2.111 16.423 1.441 0.308 0.680 C04 A1AFE 2 A1AFE C05 C3 C 0 1 N N N N N N -3.625 2.618 15.000 0.555 0.530 -0.552 C05 A1AFE 3 A1AFE C06 C4 C 0 1 N N N N N N -3.318 1.579 13.963 -0.473 -0.578 -0.607 C06 A1AFE 4 A1AFE C07 C5 C 0 1 N N N N N N -2.151 0.733 14.399 0.010 -2.011 -0.548 C07 A1AFE 5 A1AFE C08 C6 C 0 1 N N N N N N -2.484 0.078 15.744 0.910 -2.169 0.683 C08 A1AFE 6 A1AFE C09 C7 C 0 1 N N N N N N -4.011 1.474 12.848 -1.778 -0.298 -0.705 C09 A1AFE 7 A1AFE C10 C8 C 0 1 Y N N N N N -5.210 2.436 12.618 -2.726 -1.417 -0.576 C10 A1AFE 8 A1AFE C11 C9 C 0 1 Y N N N N N -4.963 3.746 12.142 -2.843 -2.375 -1.584 C11 A1AFE 9 A1AFE C12 C10 C 0 1 Y N N N N N -6.049 4.599 11.950 -3.728 -3.423 -1.418 C12 A1AFE 10 A1AFE C13 C11 C 0 1 Y N N N N N -7.354 4.170 12.220 -4.481 -3.515 -0.261 C13 A1AFE 11 A1AFE C14 C12 C 0 1 Y N N N N N -7.587 2.883 12.691 -4.364 -2.558 0.731 C14 A1AFE 12 A1AFE C15 C13 C 0 1 Y N N N N N -6.488 2.012 12.891 -3.486 -1.498 0.562 C15 A1AFE 13 A1AFE C16 C14 C 0 1 N N N N N N -6.757 0.587 13.408 -3.402 -0.433 1.609 C16 A1AFE 14 A1AFE C20 C15 C 0 1 Y N N N N N -4.579 -0.577 11.445 -3.154 1.763 -0.234 C20 A1AFE 15 A1AFE C21 C16 C 0 1 Y N N N N N -4.265 -1.518 10.449 -3.437 3.087 -0.583 C21 A1AFE 16 A1AFE C22 C17 C 0 1 Y N N N N N -3.039 -1.438 9.780 -2.746 3.739 -1.578 C22 A1AFE 17 A1AFE C23 C18 C 0 1 Y N N N N N -2.133 -0.424 10.101 -1.740 3.080 -2.262 C23 A1AFE 18 A1AFE C24 C19 C 0 1 Y N N N N N -2.445 0.507 11.081 -1.449 1.777 -1.939 C24 A1AFE 19 A1AFE C25 C20 C 0 1 Y N N N N N -3.682 0.415 11.769 -2.157 1.104 -0.927 C25 A1AFE 20 A1AFE C26 C21 C 0 1 Y N N N N N -0.729 0.270 18.271 4.207 -0.279 0.807 C26 A1AFE 21 A1AFE C27 C22 C 0 1 Y N N N N N -1.158 -0.900 18.953 5.239 -0.143 -0.139 C27 A1AFE 22 A1AFE C29 C23 C 0 1 Y N N N N N -2.259 -2.514 19.989 6.719 -0.251 -1.818 C29 A1AFE 23 A1AFE C30 C24 C 0 1 Y N N N N N -0.921 -2.878 19.925 7.096 0.812 -1.089 C30 A1AFE 24 A1AFE C31 C25 C 0 1 Y N N N N N -0.225 -1.846 19.265 6.151 0.920 0.024 C31 A1AFE 25 A1AFE C32 C26 C 0 1 Y N N N N N 1.120 -1.612 18.891 6.000 1.787 1.103 C32 A1AFE 26 A1AFE C34 C27 C 0 1 Y N N N N N 0.601 0.443 17.934 4.135 0.642 1.850 C34 A1AFE 27 A1AFE N03 N1 N 0 1 N N N N N N -2.625 1.151 16.749 1.902 -1.086 0.686 N03 A1AFE 28 A1AFE N28 N2 N 0 1 Y N N N N N -2.389 -1.320 19.400 5.610 -0.830 -1.259 N28 A1AFE 29 A1AFE N33 N3 N 0 1 Y N N N N N 1.469 -0.505 18.258 5.016 1.618 1.964 N33 A1AFE 30 A1AFE O01 O1 O 0 1 N N N N N N -2.002 2.222 18.662 3.595 -2.522 0.604 O01 A1AFE 31 A1AFE O18 O2 O 0 1 N N N N N N -6.111 -1.954 13.074 -5.386 0.877 0.461 O18 A1AFE 32 A1AFE O19 O3 O 0 1 N N N N N N -7.182 -0.839 11.219 -3.997 2.092 2.097 O19 A1AFE 33 A1AFE S17 S1 S 0 1 N N N N N N -6.189 -0.721 12.289 -4.126 1.117 1.071 S17 A1AFE 34 A1AFE H1 H1 H 0 1 N N N N N N -3.595 2.971 17.103 2.301 0.977 0.637 H1 A1AFE 35 A1AFE H2 H2 H 0 1 N N N N N N -4.657 1.621 16.578 0.869 0.508 1.586 H2 A1AFE 36 A1AFE H3 H3 H 0 1 N N N N N N -2.845 3.392 14.947 0.052 1.494 -0.473 H3 A1AFE 37 A1AFE H4 H4 H 0 1 N N N N N N -4.601 3.063 14.757 1.167 0.509 -1.453 H4 A1AFE 38 A1AFE H5 H5 H 0 1 N N N N N N -1.959 -0.046 13.647 -0.845 -2.683 -0.468 H5 A1AFE 39 A1AFE H6 H6 H 0 1 N N N N N N -1.258 1.365 14.508 0.577 -2.244 -1.450 H6 A1AFE 40 A1AFE H7 H7 H 0 1 N N N N N N -3.426 -0.484 15.663 0.304 -2.112 1.588 H7 A1AFE 41 A1AFE H8 H8 H 0 1 N N N N N N -1.673 -0.605 16.038 1.420 -3.131 0.642 H8 A1AFE 42 A1AFE H9 H9 H 0 1 N N N N N N -3.957 4.077 11.932 -2.250 -2.297 -2.484 H9 A1AFE 43 A1AFE H10 H10 H 0 1 N N N N N N -5.881 5.603 11.589 -3.831 -4.171 -2.190 H10 A1AFE 44 A1AFE H11 H11 H 0 1 N N N N N N -8.184 4.842 12.062 -5.166 -4.340 -0.131 H11 A1AFE 45 A1AFE H12 H12 H 0 1 N N N N N N -8.593 2.551 12.902 -4.953 -2.636 1.633 H12 A1AFE 46 A1AFE H13 H13 H 0 1 N N N N N N -7.841 0.471 13.554 -3.925 -0.775 2.502 H13 A1AFE 47 A1AFE H14 H14 H 0 1 N N N N N N -6.242 0.466 14.372 -2.354 -0.264 1.857 H14 A1AFE 48 A1AFE H15 H15 H 0 1 N N N N N N -4.968 -2.300 10.201 -4.220 3.613 -0.058 H15 A1AFE 49 A1AFE H16 H16 H 0 1 N N N N N N -2.793 -2.160 9.015 -2.989 4.761 -1.825 H16 A1AFE 50 A1AFE H17 H17 H 0 1 N N N N N N -1.186 -0.365 9.584 -1.189 3.586 -3.042 H17 A1AFE 51 A1AFE H18 H18 H 0 1 N N N N N N -1.749 1.298 11.319 -0.664 1.260 -2.471 H18 A1AFE 52 A1AFE H19 H19 H 0 1 N N N N N N -3.054 -3.092 20.435 7.216 -0.598 -2.712 H19 A1AFE 53 A1AFE H20 H20 H 0 1 N N N N N N -0.490 -3.790 20.312 7.936 1.462 -1.287 H20 A1AFE 54 A1AFE H21 H21 H 0 1 N N N N N N 1.873 -2.349 19.126 6.694 2.604 1.236 H21 A1AFE 55 A1AFE H22 H22 H 0 1 N N N N N N 0.926 1.334 17.417 3.349 0.550 2.585 H22 A1AFE 56 A1AFE H23 H23 H 0 1 N N N N N N -3.245 -0.813 19.300 5.155 -1.612 -1.608 H23 A1AFE 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AFE C22 C23 DOUB Y N 1 A1AFE C22 C21 SING Y N 2 A1AFE C23 C24 SING Y N 3 A1AFE C21 C20 DOUB Y N 4 A1AFE C24 C25 DOUB Y N 5 A1AFE O19 S17 DOUB N N 6 A1AFE C20 C25 SING Y N 7 A1AFE C20 S17 SING N N 8 A1AFE C25 C09 SING N N 9 A1AFE C12 C11 DOUB Y N 10 A1AFE C12 C13 SING Y N 11 A1AFE C11 C10 SING Y N 12 A1AFE C13 C14 DOUB Y N 13 A1AFE S17 O18 DOUB N N 14 A1AFE S17 C16 SING N N 15 A1AFE C10 C09 SING N N 16 A1AFE C10 C15 DOUB Y N 17 A1AFE C14 C15 SING Y N 18 A1AFE C09 C06 DOUB N N 19 A1AFE C15 C16 SING N N 20 A1AFE C06 C07 SING N N 21 A1AFE C06 C05 SING N N 22 A1AFE C07 C08 SING N N 23 A1AFE C05 C04 SING N N 24 A1AFE C08 N03 SING N N 25 A1AFE C04 N03 SING N N 26 A1AFE N03 C02 SING N N 27 A1AFE C34 N33 DOUB Y N 28 A1AFE C34 C26 SING Y N 29 A1AFE C02 C26 SING N N 30 A1AFE C02 O01 DOUB N N 31 A1AFE N33 C32 SING Y N 32 A1AFE C26 C27 DOUB Y N 33 A1AFE C32 C31 DOUB Y N 34 A1AFE C27 C31 SING Y N 35 A1AFE C27 N28 SING Y N 36 A1AFE C31 C30 SING Y N 37 A1AFE N28 C29 SING Y N 38 A1AFE C30 C29 DOUB Y N 39 A1AFE C04 H1 SING N N 40 A1AFE C04 H2 SING N N 41 A1AFE C05 H3 SING N N 42 A1AFE C05 H4 SING N N 43 A1AFE C07 H5 SING N N 44 A1AFE C07 H6 SING N N 45 A1AFE C08 H7 SING N N 46 A1AFE C08 H8 SING N N 47 A1AFE C11 H9 SING N N 48 A1AFE C12 H10 SING N N 49 A1AFE C13 H11 SING N N 50 A1AFE C14 H12 SING N N 51 A1AFE C16 H13 SING N N 52 A1AFE C16 H14 SING N N 53 A1AFE C21 H15 SING N N 54 A1AFE C22 H16 SING N N 55 A1AFE C23 H17 SING N N 56 A1AFE C24 H18 SING N N 57 A1AFE C29 H19 SING N N 58 A1AFE C30 H20 SING N N 59 A1AFE C32 H21 SING N N 60 A1AFE C34 H22 SING N N 61 A1AFE N28 H23 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AFE SMILES ACDLabs 12.01 "O=C(c1cncc2cc[NH]c21)N1CC/C(CC1)=C1/c2ccccc2S(=O)(=O)Cc2ccccc12" A1AFE InChI InChI 1.06 "InChI=1S/C27H23N3O3S/c31-27(23-16-28-15-19-9-12-29-26(19)23)30-13-10-18(11-14-30)25-21-6-2-1-5-20(21)17-34(32,33)24-8-4-3-7-22(24)25/h1-9,12,15-16,29H,10-11,13-14,17H2" A1AFE InChIKey InChI 1.06 SQWIJPFDIKPQCT-UHFFFAOYSA-N A1AFE SMILES_CANONICAL CACTVS 3.385 "O=C(N1CCC(CC1)=C2c3ccccc3C[S](=O)(=O)c4ccccc24)c5cncc6cc[nH]c56" A1AFE SMILES CACTVS 3.385 "O=C(N1CCC(CC1)=C2c3ccccc3C[S](=O)(=O)c4ccccc24)c5cncc6cc[nH]c56" A1AFE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CS(=O)(=O)c3ccccc3C2=C4CCN(CC4)C(=O)c5cncc6c5[nH]cc6" A1AFE SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CS(=O)(=O)c3ccccc3C2=C4CCN(CC4)C(=O)c5cncc6c5[nH]cc6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AFE "SYSTEMATIC NAME" ACDLabs 12.01 "11-[1-(1H-pyrrolo[3,2-c]pyridine-7-carbonyl)piperidin-4-ylidene]-6,11-dihydro-5H-5lambda~6~-dibenzo[b,e]thiepine-5,5-dione" A1AFE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[4-[5,5-bis(oxidanylidene)-6~{H}-benzo[c][1]benzothiepin-11-ylidene]piperidin-1-yl]-(1~{H}-pyrrolo[3,2-c]pyridin-7-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AFE "Create component" 2024-02-23 RCSB A1AFE "Modify synonyms" 2024-02-25 RCSB A1AFE "Initial release" 2024-11-20 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1AFE _pdbx_chem_comp_synonyms.name NZ-804 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type "name usedin entry title by the authors" #