data_A1AFF # _chem_comp.id A1AFF _chem_comp.name "(3S)-3-phenyl-1-[(2R)-thiolane-2-sulfonyl]pyrazolidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N2 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-23 _chem_comp.pdbx_modified_date 2025-02-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 298.424 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AFF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8W39 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AFF N1 N1 N 0 1 N N N N N N 12.250 23.191 -1.637 -0.231 1.166 -0.187 N1 A1AFF 1 A1AFF C4 C1 C 0 1 N N N N N N 14.184 26.791 0.223 -3.581 -2.667 -0.191 C4 A1AFF 2 A1AFF C5 C2 C 0 1 N N N N N N 11.722 23.304 -3.033 0.285 1.951 -1.319 C5 A1AFF 3 A1AFF C6 C3 C 0 1 N N N N N N 10.235 22.947 -2.908 1.741 1.469 -1.525 C6 A1AFF 4 A1AFF C7 C4 C 0 1 N N S N N N 9.978 22.976 -1.390 1.707 0.094 -0.802 C7 A1AFF 5 A1AFF C8 C5 C 0 1 Y N N N N N 8.730 22.334 -0.842 3.070 -0.271 -0.274 C8 A1AFF 6 A1AFF C10 C6 C 0 1 Y N N N N N 6.526 21.367 -1.150 4.777 -0.052 1.391 C10 A1AFF 7 A1AFF C13 C7 C 0 1 Y N N N N N 8.565 22.188 0.530 3.867 -1.158 -0.974 C13 A1AFF 8 A1AFF C1 C8 C 0 1 N N R N N N 14.454 24.196 -0.094 -2.645 -0.117 -0.430 C1 A1AFF 9 A1AFF C11 C9 C 0 1 Y N N N N N 6.383 21.215 0.215 5.571 -0.942 0.694 C11 A1AFF 10 A1AFF C12 C10 C 0 1 Y N N N N N 7.407 21.619 1.051 5.117 -1.494 -0.490 C12 A1AFF 11 A1AFF C2 C11 C 0 1 N N N N N N 13.479 24.552 1.006 -4.131 -0.186 0.013 C2 A1AFF 12 A1AFF C3 C12 C 0 1 N N N N N N 13.920 25.927 1.431 -4.671 -1.587 -0.277 C3 A1AFF 13 A1AFF C9 C13 C 0 1 Y N N N N N 7.689 21.934 -1.672 3.526 0.284 0.907 C9 A1AFF 14 A1AFF N2 N2 N 0 1 N N N N N N 11.249 22.423 -0.887 0.762 0.365 0.315 N2 A1AFF 15 A1AFF O1 O1 O 0 1 N N N N N N 13.932 21.664 -0.405 -1.642 0.976 1.787 O1 A1AFF 16 A1AFF O2 O2 O 0 1 N N N N N N 14.730 23.022 -2.318 -2.264 2.498 -0.061 O2 A1AFF 17 A1AFF S1 S1 S 0 1 N N N N N N 13.890 22.871 -1.172 -1.779 1.245 0.398 S1 A1AFF 18 A1AFF S2 S2 S 0 1 N N N N N N 14.540 25.669 -1.154 -2.031 -1.749 0.154 S2 A1AFF 19 A1AFF H1 H1 H 0 1 N N N N N N 15.046 27.448 0.409 -3.799 -3.362 0.619 H1 A1AFF 20 A1AFF H2 H2 H 0 1 N N N N N N 13.299 27.403 -0.006 -3.503 -3.203 -1.138 H2 A1AFF 21 A1AFF H3 H3 H 0 1 N N N N N N 12.237 22.599 -3.702 -0.306 1.757 -2.214 H3 A1AFF 22 A1AFF H4 H4 H 0 1 N N N N N N 11.846 24.328 -3.414 0.270 3.014 -1.080 H4 A1AFF 23 A1AFF H5 H5 H 0 1 N N N N N N 9.609 23.688 -3.426 1.969 1.349 -2.584 H5 A1AFF 24 A1AFF H6 H6 H 0 1 N N N N N N 10.036 21.947 -3.320 2.450 2.145 -1.047 H6 A1AFF 25 A1AFF H7 H7 H 0 1 N N N N N N 9.946 24.036 -1.099 1.324 -0.684 -1.462 H7 A1AFF 26 A1AFF H8 H8 H 0 1 N N N N N N 5.737 21.047 -1.814 5.131 0.380 2.315 H8 A1AFF 27 A1AFF H9 H9 H 0 1 N N N N N N 9.345 22.520 1.200 3.512 -1.589 -1.898 H9 A1AFF 28 A1AFF H10 H10 H 0 1 N N N N N N 15.462 23.960 0.279 -2.562 -0.030 -1.514 H10 A1AFF 29 A1AFF H11 H11 H 0 1 N N N N N N 5.481 20.785 0.625 6.547 -1.207 1.074 H11 A1AFF 30 A1AFF H12 H12 H 0 1 N N N N N N 7.307 21.492 2.119 5.740 -2.188 -1.036 H12 A1AFF 31 A1AFF H13 H13 H 0 1 N N N N N N 12.447 24.569 0.627 -4.204 0.020 1.081 H13 A1AFF 32 A1AFF H14 H14 H 0 1 N N N N N N 13.551 23.840 1.841 -4.712 0.552 -0.540 H14 A1AFF 33 A1AFF H15 H15 H 0 1 N N N N N N 14.842 25.844 2.026 -5.101 -1.599 -1.279 H15 A1AFF 34 A1AFF H16 H16 H 0 1 N N N N N N 13.130 26.389 2.041 -5.455 -1.819 0.443 H16 A1AFF 35 A1AFF H17 H17 H 0 1 N N N N N N 7.782 22.064 -2.740 2.905 0.980 1.451 H17 A1AFF 36 A1AFF H18 H18 H 0 1 N N N N N N 11.321 21.445 -1.085 1.230 0.812 1.089 H18 A1AFF 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AFF C5 C6 SING N N 1 A1AFF C5 N1 SING N N 2 A1AFF C6 C7 SING N N 3 A1AFF O2 S1 DOUB N N 4 A1AFF C9 C10 DOUB Y N 5 A1AFF C9 C8 SING Y N 6 A1AFF N1 S1 SING N N 7 A1AFF N1 N2 SING N N 8 A1AFF C7 N2 SING N N 9 A1AFF C7 C8 SING N N 10 A1AFF S1 O1 DOUB N N 11 A1AFF S1 C1 SING N N 12 A1AFF S2 C1 SING N N 13 A1AFF S2 C4 SING N N 14 A1AFF C10 C11 SING Y N 15 A1AFF C8 C13 DOUB Y N 16 A1AFF C1 C2 SING N N 17 A1AFF C11 C12 DOUB Y N 18 A1AFF C4 C3 SING N N 19 A1AFF C13 C12 SING Y N 20 A1AFF C2 C3 SING N N 21 A1AFF C4 H1 SING N N 22 A1AFF C4 H2 SING N N 23 A1AFF C5 H3 SING N N 24 A1AFF C5 H4 SING N N 25 A1AFF C6 H5 SING N N 26 A1AFF C6 H6 SING N N 27 A1AFF C7 H7 SING N N 28 A1AFF C10 H8 SING N N 29 A1AFF C13 H9 SING N N 30 A1AFF C1 H10 SING N N 31 A1AFF C11 H11 SING N N 32 A1AFF C12 H12 SING N N 33 A1AFF C2 H13 SING N N 34 A1AFF C2 H14 SING N N 35 A1AFF C3 H15 SING N N 36 A1AFF C3 H16 SING N N 37 A1AFF C9 H17 SING N N 38 A1AFF N2 H18 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AFF SMILES ACDLabs 12.01 "O=S(=O)(N1CCC(N1)c1ccccc1)C1CCCS1" A1AFF InChI InChI 1.06 "InChI=1S/C13H18N2O2S2/c16-19(17,13-7-4-10-18-13)15-9-8-12(14-15)11-5-2-1-3-6-11/h1-3,5-6,12-14H,4,7-10H2/t12-,13+/m0/s1" A1AFF InChIKey InChI 1.06 QQHBJUBVNXKFQI-QWHCGFSZSA-N A1AFF SMILES_CANONICAL CACTVS 3.385 "O=[S](=O)([C@@H]1CCCS1)N2CC[C@H](N2)c3ccccc3" A1AFF SMILES CACTVS 3.385 "O=[S](=O)([CH]1CCCS1)N2CC[CH](N2)c3ccccc3" A1AFF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@@H]2CCN(N2)S(=O)(=O)[C@@H]3CCCS3" A1AFF SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C2CCN(N2)S(=O)(=O)C3CCCS3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AFF "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-phenyl-1-[(2R)-thiolane-2-sulfonyl]pyrazolidine" A1AFF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-phenyl-1-[(2~{R})-thiolan-2-yl]sulfonyl-pyrazolidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AFF "Create component" 2024-02-23 RCSB A1AFF "Initial release" 2025-02-26 RCSB #