data_A1AFR # _chem_comp.id A1AFR _chem_comp.name "1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]propan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H24 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-23 _chem_comp.pdbx_modified_date 2024-12-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.464 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AFR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8W2X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AFR C0N C1 C 0 1 N N N N N N 23.551 7.225 19.455 6.932 1.785 0.495 C0N A1AFR 1 A1AFR O01 O1 O 0 1 N N N N N N 22.912 6.095 19.995 7.187 0.384 0.382 O01 A1AFR 2 A1AFR C0E C2 C 0 1 Y N N N N N 22.701 5.006 19.131 6.109 -0.428 0.215 C0E A1AFR 3 A1AFR C0O C3 C 0 1 Y N N N N N 21.700 4.098 19.447 4.837 0.116 0.163 C0O A1AFR 4 A1AFR C0C C4 C 0 1 Y N N N N N 23.471 4.806 17.981 6.287 -1.798 0.093 C0C A1AFR 5 A1AFR C0D C5 C 0 1 Y N N N N N 23.241 3.705 17.161 5.191 -2.632 -0.083 C0D A1AFR 6 A1AFR O02 O2 O 0 1 N N N N N N 23.964 3.435 15.993 5.372 -3.973 -0.207 O02 A1AFR 7 A1AFR C0U C6 C 0 1 N N N N N N 25.209 4.044 15.809 4.201 -4.771 -0.391 C0U A1AFR 8 A1AFR C0R C7 C 0 1 Y N N N N N 22.242 2.812 17.486 3.915 -2.099 -0.137 C0R A1AFR 9 A1AFR C0J C8 C 0 1 Y N N N N N 21.480 3.009 18.621 3.730 -0.720 -0.009 C0J A1AFR 10 A1AFR C0S C9 C 0 1 N N N N N N 20.387 2.012 18.951 2.412 -0.163 -0.063 C0S A1AFR 11 A1AFR C0H C10 C 0 1 N N N N N N 19.520 1.307 19.283 1.331 0.293 -0.108 C0H A1AFR 12 A1AFR C0G C11 C 0 1 Y N N N N N 18.369 0.443 19.721 0.013 0.850 -0.163 C0G A1AFR 13 A1AFR N09 N1 N 0 1 Y N N N N N 17.192 0.433 19.151 -1.110 0.182 -0.323 N09 A1AFR 14 A1AFR C0A C12 C 0 1 Y N N N N N 18.376 -0.488 20.805 -0.337 2.267 -0.045 C0A A1AFR 15 A1AFR C0F C13 C 0 1 Y N N N N N 19.301 -0.936 21.781 0.387 3.456 0.141 C0F A1AFR 16 A1AFR N05 N2 N 0 1 N N N N N N 20.653 -0.417 21.863 1.764 3.436 0.255 N05 A1AFR 17 A1AFR N06 N3 N 0 1 Y N N N N N 18.916 -1.863 22.655 -0.285 4.601 0.203 N06 A1AFR 18 A1AFR C0L C14 C 0 1 Y N N N N N 17.677 -2.370 22.618 -1.602 4.626 0.094 C0L A1AFR 19 A1AFR N08 N4 N 0 1 Y N N N N N 16.778 -1.982 21.725 -2.320 3.539 -0.080 N08 A1AFR 20 A1AFR C0B C15 C 0 1 Y N N N N N 17.105 -1.040 20.806 -1.737 2.343 -0.156 C0B A1AFR 21 A1AFR N04 N5 N 0 1 Y N N N N N 16.422 -0.460 19.795 -2.192 1.068 -0.324 N04 A1AFR 22 A1AFR C0K C16 C 0 1 N N S N N N 15.094 -0.757 19.481 -3.598 0.686 -0.479 C0K A1AFR 23 A1AFR C0I C17 C 0 1 N N N N N N 14.721 -0.355 17.995 -3.996 -0.397 0.554 C0I A1AFR 24 A1AFR C0Q C18 C 0 1 N N N N N N 14.139 0.116 20.299 -3.826 -0.063 -1.819 C0Q A1AFR 25 A1AFR C0T C19 C 0 1 N N N N N N 13.996 1.256 19.568 -5.060 -0.940 -1.519 C0T A1AFR 26 A1AFR N07 N6 N 0 1 N N N N N N 14.442 0.929 18.045 -5.134 -1.105 -0.060 N07 A1AFR 27 A1AFR C0P C20 C 0 1 N N N N N N 14.515 1.899 16.970 -6.084 -1.790 0.606 C0P A1AFR 28 A1AFR O03 O3 O 0 1 N N N N N N 14.223 3.017 17.214 -6.045 -1.861 1.816 O03 A1AFR 29 A1AFR C0M C21 C 0 1 N N N N N N 14.944 1.538 15.546 -7.196 -2.468 -0.153 C0M A1AFR 30 A1AFR C0V C22 C 0 1 N N N N N N 16.194 2.303 15.115 -8.132 -3.170 0.832 C0V A1AFR 31 A1AFR H1 H1 H 0 1 N N N N N N 23.652 7.996 20.233 7.875 2.317 0.623 H1 A1AFR 32 A1AFR H2 H2 H 0 1 N N N N N N 24.549 6.942 19.088 6.436 2.139 -0.410 H2 A1AFR 33 A1AFR H3 H3 H 0 1 N N N N N N 22.953 7.621 18.621 6.291 1.970 1.357 H3 A1AFR 34 A1AFR H4 H4 H 0 1 N N N N N N 21.097 4.240 20.331 4.700 1.183 0.254 H4 A1AFR 35 A1AFR H5 H5 H 0 1 N N N N N N 24.249 5.510 17.727 7.281 -2.218 0.135 H5 A1AFR 36 A1AFR H6 H6 H 0 1 N N N N N N 25.636 3.724 14.847 3.536 -4.643 0.463 H6 A1AFR 37 A1AFR H7 H7 H 0 1 N N N N N N 25.086 5.137 15.810 3.688 -4.459 -1.300 H7 A1AFR 38 A1AFR H8 H8 H 0 1 N N N N N N 25.885 3.750 16.625 4.486 -5.820 -0.476 H8 A1AFR 39 A1AFR H9 H9 H 0 1 N N N N N N 22.055 1.958 16.852 3.062 -2.748 -0.274 H9 A1AFR 40 A1AFR H10 H10 H 0 1 N N N N N N 21.136 -0.861 22.618 2.242 2.593 0.208 H10 A1AFR 41 A1AFR H11 H11 H 0 1 N N N N N N 21.133 -0.601 21.005 2.252 4.264 0.383 H11 A1AFR 42 A1AFR H12 H12 H 0 1 N N N N N N 17.401 -3.122 23.342 -2.108 5.579 0.151 H12 A1AFR 43 A1AFR H13 H13 H 0 1 N N N N N N 14.861 -1.820 19.639 -4.248 1.557 -0.403 H13 A1AFR 44 A1AFR H14 H14 H 0 1 N N N N N N 13.847 -0.926 17.649 -3.167 -1.085 0.721 H14 A1AFR 45 A1AFR H15 H15 H 0 1 N N N N N N 15.570 -0.539 17.321 -4.299 0.067 1.492 H15 A1AFR 46 A1AFR H16 H16 H 0 1 N N N N N N 13.169 -0.386 20.427 -4.039 0.641 -2.623 H16 A1AFR 47 A1AFR H17 H17 H 0 1 N N N N N N 14.569 0.340 21.286 -2.962 -0.680 -2.068 H17 A1AFR 48 A1AFR H18 H18 H 0 1 N N N N N N 14.636 2.049 19.983 -5.962 -0.447 -1.883 H18 A1AFR 49 A1AFR H19 H19 H 0 1 N N N N N N 12.946 1.584 19.588 -4.949 -1.912 -1.999 H19 A1AFR 50 A1AFR H20 H20 H 0 1 N N N N N N 14.123 1.781 14.855 -7.755 -1.724 -0.720 H20 A1AFR 51 A1AFR H21 H21 H 0 1 N N N N N N 15.154 0.459 15.501 -6.772 -3.203 -0.838 H21 A1AFR 52 A1AFR H22 H22 H 0 1 N N N N N N 16.466 2.014 14.089 -7.572 -3.914 1.398 H22 A1AFR 53 A1AFR H23 H23 H 0 1 N N N N N N 15.993 3.384 15.150 -8.556 -2.435 1.517 H23 A1AFR 54 A1AFR H24 H24 H 0 1 N N N N N N 17.024 2.062 15.796 -8.936 -3.661 0.283 H24 A1AFR 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AFR C0V C0M SING N N 1 A1AFR C0M C0P SING N N 2 A1AFR C0U O02 SING N N 3 A1AFR O02 C0D SING N N 4 A1AFR C0P O03 DOUB N N 5 A1AFR C0P N07 SING N N 6 A1AFR C0D C0R DOUB Y N 7 A1AFR C0D C0C SING Y N 8 A1AFR C0R C0J SING Y N 9 A1AFR C0C C0E DOUB Y N 10 A1AFR C0I N07 SING N N 11 A1AFR C0I C0K SING N N 12 A1AFR N07 C0T SING N N 13 A1AFR C0J C0S SING N N 14 A1AFR C0J C0O DOUB Y N 15 A1AFR C0S C0H TRIP N N 16 A1AFR C0E C0O SING Y N 17 A1AFR C0E O01 SING N N 18 A1AFR N09 C0G DOUB Y N 19 A1AFR N09 N04 SING Y N 20 A1AFR C0H C0G SING N N 21 A1AFR C0N O01 SING N N 22 A1AFR C0K N04 SING N N 23 A1AFR C0K C0Q SING N N 24 A1AFR C0T C0Q SING N N 25 A1AFR C0G C0A SING Y N 26 A1AFR N04 C0B SING Y N 27 A1AFR C0A C0B DOUB Y N 28 A1AFR C0A C0F SING Y N 29 A1AFR C0B N08 SING Y N 30 A1AFR N08 C0L DOUB Y N 31 A1AFR C0F N05 SING N N 32 A1AFR C0F N06 DOUB Y N 33 A1AFR C0L N06 SING Y N 34 A1AFR C0N H1 SING N N 35 A1AFR C0N H2 SING N N 36 A1AFR C0N H3 SING N N 37 A1AFR C0O H4 SING N N 38 A1AFR C0C H5 SING N N 39 A1AFR C0U H6 SING N N 40 A1AFR C0U H7 SING N N 41 A1AFR C0U H8 SING N N 42 A1AFR C0R H9 SING N N 43 A1AFR N05 H10 SING N N 44 A1AFR N05 H11 SING N N 45 A1AFR C0L H12 SING N N 46 A1AFR C0K H13 SING N N 47 A1AFR C0I H14 SING N N 48 A1AFR C0I H15 SING N N 49 A1AFR C0Q H16 SING N N 50 A1AFR C0Q H17 SING N N 51 A1AFR C0T H18 SING N N 52 A1AFR C0T H19 SING N N 53 A1AFR C0M H20 SING N N 54 A1AFR C0M H21 SING N N 55 A1AFR C0V H22 SING N N 56 A1AFR C0V H23 SING N N 57 A1AFR C0V H24 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AFR SMILES ACDLabs 12.01 "CCC(=O)N1CCC(C1)n1nc(C#Cc2cc(OC)cc(OC)c2)c2c(N)ncnc21" A1AFR InChI InChI 1.06 "InChI=1S/C22H24N6O3/c1-4-19(29)27-8-7-15(12-27)28-22-20(21(23)24-13-25-22)18(26-28)6-5-14-9-16(30-2)11-17(10-14)31-3/h9-11,13,15H,4,7-8,12H2,1-3H3,(H2,23,24,25)/t15-/m0/s1" A1AFR InChIKey InChI 1.06 DZLNAZQOANZLHT-HNNXBMFYSA-N A1AFR SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CC[C@@H](C1)n2nc(C#Cc3cc(OC)cc(OC)c3)c4c(N)ncnc24" A1AFR SMILES CACTVS 3.385 "CCC(=O)N1CC[CH](C1)n2nc(C#Cc3cc(OC)cc(OC)c3)c4c(N)ncnc24" A1AFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC[C@@H](C1)n2c3c(c(n2)C#Cc4cc(cc(c4)OC)OC)c(ncn3)N" A1AFR SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCC(C1)n2c3c(c(n2)C#Cc4cc(cc(c4)OC)OC)c(ncn3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AFR "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3S)-3-{4-amino-3-[(3,5-dimethoxyphenyl)ethynyl]-1H-pyrazolo[3,4-d]pyrimidin-1-yl}pyrrolidin-1-yl]propan-1-one" A1AFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{S})-3-[4-azanyl-3-[2-(3,5-dimethoxyphenyl)ethynyl]pyrazolo[3,4-d]pyrimidin-1-yl]pyrrolidin-1-yl]propan-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AFR "Create component" 2024-02-23 RCSB A1AFR "Modify PCM" 2024-09-27 PDBE A1AFR "Initial release" 2025-01-01 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AFR _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C0V _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #