data_A1AG1 # _chem_comp.id A1AG1 _chem_comp.name "(2R)-2-[(5R,6S,8R,9aS)-8-amino-1-oxo-5-(2-phenylethyl)hexahydro-1H-pyrrolo[1,2-a][1,4]diazepin-2(3H)-yl]-N-[(3,4-dichlorophenyl)methyl]-4-methylpentanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H38 Cl2 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-04 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 545.544 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AG1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AVA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AG1 C11 C1 C 0 1 Y N N N N N -67.969 -22.013 -35.942 8.743 2.303 0.883 C11 A1AG1 1 A1AG1 C13 C2 C 0 1 N N N N N N -67.952 -26.951 -37.951 2.984 0.338 -1.721 C13 A1AG1 2 A1AG1 C14 C3 C 0 1 N N N N N N -66.508 -27.152 -38.411 1.701 -0.423 -2.056 C14 A1AG1 3 A1AG1 C16 C4 C 0 1 N N R N N N -65.896 -29.358 -39.464 -0.262 -0.058 -0.485 C16 A1AG1 4 A1AG1 C17 C5 C 0 1 N N N N N N -64.520 -29.097 -40.089 -0.147 0.568 0.907 C17 A1AG1 5 A1AG1 C18 C6 C 0 1 N N N N N N -64.023 -30.195 -41.031 -1.387 1.420 1.186 C18 A1AG1 6 A1AG1 C19 C7 C 0 1 N N N N N N -62.695 -29.807 -41.669 -1.351 1.913 2.634 C19 A1AG1 7 A1AG1 C21 C8 C 0 1 N N N N N N -67.057 -29.159 -40.440 -1.401 -1.044 -0.499 C21 A1AG1 8 A1AG1 C22 C9 C 0 1 N N N N N N -69.289 -29.893 -41.106 -3.783 -1.557 -0.465 C22 A1AG1 9 A1AG1 C23 C10 C 0 1 Y N N N N N -70.195 -28.744 -40.739 -5.092 -0.814 -0.540 C23 A1AG1 10 A1AG1 C24 C11 C 0 1 Y N N N N N -70.891 -28.755 -39.536 -5.685 -0.581 -1.766 C24 A1AG1 11 A1AG1 C25 C12 C 0 1 Y N N N N N -71.676 -27.680 -39.155 -6.885 0.102 -1.835 C25 A1AG1 12 A1AG1 C26 C13 C 0 1 Y N N N N N -71.767 -26.567 -39.974 -7.493 0.551 -0.677 C26 A1AG1 13 A1AG1 C28 C14 C 0 1 Y N N N N N -70.313 -27.632 -41.572 -5.701 -0.370 0.619 C28 A1AG1 14 A1AG1 C1 C15 C 0 1 N N N N N N -65.716 -28.852 -34.506 3.066 -3.513 0.642 C1 A1AG1 15 A1AG1 C2 C16 C 0 1 N N R N N N -67.012 -29.244 -33.790 4.458 -3.189 1.234 C2 A1AG1 16 A1AG1 O1 O1 O 0 1 N N N N N N -67.019 -28.282 -41.300 -1.173 -2.235 -0.469 O1 A1AG1 17 A1AG1 C3 C17 C 0 1 N N N N N N -67.968 -28.157 -34.266 5.062 -2.209 0.193 C3 A1AG1 18 A1AG1 C4 C18 C 0 1 N N R N N N -68.168 -26.886 -36.422 4.119 -0.637 -1.422 C4 A1AG1 19 A1AG1 N1 N1 N 0 1 N N N N N N -66.084 -28.553 -38.259 0.987 -0.749 -0.813 N1 A1AG1 20 A1AG1 C5 C19 C 0 1 N N N N N N -69.635 -26.544 -36.156 5.419 0.152 -1.255 C5 A1AG1 21 A1AG1 C6 C20 C 0 1 N N N N N N -70.089 -25.119 -36.501 5.292 1.097 -0.059 C6 A1AG1 22 A1AG1 N2 N2 N 0 1 N N N N N N -68.113 -29.950 -40.248 -2.674 -0.604 -0.546 N2 A1AG1 23 A1AG1 N3 N3 N 0 1 N N N N N N -66.753 -29.339 -32.351 5.275 -4.406 1.336 N3 A1AG1 24 A1AG1 C7 C21 C 0 1 Y N N N N N -69.320 -24.013 -35.816 6.529 1.951 0.041 C7 A1AG1 25 A1AG1 C8 C22 C 0 1 Y N N N N N -69.203 -23.973 -34.425 6.587 3.165 -0.618 C8 A1AG1 26 A1AG1 C9 C23 C 0 1 Y N N N N N -68.452 -22.983 -33.806 7.720 3.950 -0.523 C9 A1AG1 27 A1AG1 C10 C24 C 0 1 Y N N N N N -67.835 -22.001 -34.562 8.800 3.517 0.223 C10 A1AG1 28 A1AG1 C12 C25 C 0 1 Y N N N N N -68.698 -23.015 -36.565 7.607 1.520 0.791 C12 A1AG1 29 A1AG1 C15 C26 C 0 1 N N N N N N -65.902 -29.130 -37.048 1.479 -1.680 0.022 C15 A1AG1 30 A1AG1 C20 C27 C 0 1 N N N N N N -63.896 -31.545 -40.317 -1.404 2.622 0.239 C20 A1AG1 31 A1AG1 C27 C28 C 0 1 Y N N N N N -71.090 -26.550 -41.194 -6.899 0.317 0.552 C27 A1AG1 32 A1AG1 CL CL1 CL 0 0 N N N N N N -71.228 -25.206 -42.284 -7.664 0.875 2.007 CL A1AG1 33 A1AG1 CL1 CL2 CL 0 0 N N N N N N -72.685 -25.198 -39.424 -9.000 1.409 -0.764 CL1 A1AG1 34 A1AG1 O O2 O 0 1 N N N N N N -65.603 -30.308 -36.921 0.891 -1.967 1.043 O A1AG1 35 A1AG1 C C29 C 0 1 N N S N N N -66.180 -28.238 -35.832 2.772 -2.362 -0.334 C A1AG1 36 A1AG1 N N4 N 0 1 N N N N N N -67.641 -28.068 -35.706 3.885 -1.410 -0.225 N A1AG1 37 A1AG1 H1 H1 H 0 1 N N N N N N -67.504 -21.239 -36.534 9.587 1.965 1.465 H1 A1AG1 38 A1AG1 H2 H2 H 0 1 N N N N N N -68.316 -26.007 -38.384 3.262 0.966 -2.568 H2 A1AG1 39 A1AG1 H3 H3 H 0 1 N N N N N N -68.550 -27.788 -38.341 2.810 0.967 -0.848 H3 A1AG1 40 A1AG1 H4 H4 H 0 1 N N N N N N -65.848 -26.511 -37.808 1.066 0.196 -2.689 H4 A1AG1 41 A1AG1 H5 H5 H 0 1 N N N N N N -66.427 -26.867 -39.470 1.952 -1.344 -2.583 H5 A1AG1 42 A1AG1 H6 H6 H 0 1 N N N N N N -65.912 -30.416 -39.163 -0.449 0.724 -1.221 H6 A1AG1 43 A1AG1 H7 H7 H 0 1 N N N N N N -63.789 -28.989 -39.274 -0.073 -0.221 1.655 H7 A1AG1 44 A1AG1 H8 H8 H 0 1 N N N N N N -64.576 -28.157 -40.658 0.742 1.196 0.950 H8 A1AG1 45 A1AG1 H9 H9 H 0 1 N N N N N N -64.764 -30.309 -41.836 -2.283 0.821 1.029 H9 A1AG1 46 A1AG1 H10 H10 H 0 1 N N N N N N -62.801 -28.837 -42.177 -2.234 2.520 2.833 H10 A1AG1 47 A1AG1 H11 H11 H 0 1 N N N N N N -61.923 -29.730 -40.890 -1.339 1.058 3.309 H11 A1AG1 48 A1AG1 H12 H12 H 0 1 N N N N N N -62.402 -30.574 -42.401 -0.455 2.513 2.792 H12 A1AG1 49 A1AG1 H13 H13 H 0 1 N N N N N N -69.849 -30.834 -41.005 -3.727 -2.101 0.477 H13 A1AG1 50 A1AG1 H14 H14 H 0 1 N N N N N N -68.963 -29.770 -42.149 -3.718 -2.261 -1.295 H14 A1AG1 51 A1AG1 H15 H15 H 0 1 N N N N N N -70.818 -29.616 -38.888 -5.211 -0.931 -2.671 H15 A1AG1 52 A1AG1 H16 H16 H 0 1 N N N N N N -72.217 -27.709 -38.220 -7.348 0.285 -2.794 H16 A1AG1 53 A1AG1 H17 H17 H 0 1 N N N N N N -69.794 -27.615 -42.519 -5.237 -0.553 1.577 H17 A1AG1 54 A1AG1 H18 H18 H 0 1 N N N N N N -65.088 -29.737 -34.686 3.092 -4.464 0.109 H18 A1AG1 55 A1AG1 H19 H19 H 0 1 N N N N N N -65.152 -28.117 -33.914 2.315 -3.543 1.432 H19 A1AG1 56 A1AG1 H20 H20 H 0 1 N N N N N N -67.353 -30.217 -34.174 4.360 -2.709 2.208 H20 A1AG1 57 A1AG1 H21 H21 H 0 1 N N N N N N -67.776 -27.203 -33.753 5.817 -1.572 0.654 H21 A1AG1 58 A1AG1 H22 H22 H 0 1 N N N N N N -69.017 -28.452 -34.112 5.482 -2.754 -0.652 H22 A1AG1 59 A1AG1 H23 H23 H 0 1 N N N N N N -67.586 -26.021 -36.072 4.228 -1.321 -2.265 H23 A1AG1 60 A1AG1 H24 H24 H 0 1 N N N N N N -69.824 -26.703 -35.084 6.245 -0.539 -1.086 H24 A1AG1 61 A1AG1 H25 H25 H 0 1 N N N N N N -70.251 -27.241 -36.744 5.611 0.732 -2.158 H25 A1AG1 62 A1AG1 H26 H26 H 0 1 N N N N N N -69.985 -24.983 -37.588 4.419 1.737 -0.193 H26 A1AG1 63 A1AG1 H27 H27 H 0 1 N N N N N N -71.148 -25.022 -36.219 5.178 0.514 0.855 H27 A1AG1 64 A1AG1 H28 H28 H 0 1 N N N N N N -68.097 -30.603 -39.491 -2.856 0.345 -0.632 H28 A1AG1 65 A1AG1 H29 H29 H 0 1 N N N N N N -67.595 -29.595 -31.876 6.184 -4.199 1.722 H29 A1AG1 66 A1AG1 H30 H30 H 0 1 N N N N N N -66.052 -30.033 -32.184 4.804 -5.113 1.880 H30 A1AG1 67 A1AG1 H32 H32 H 0 1 N N N N N N -69.702 -24.720 -33.825 5.744 3.502 -1.204 H32 A1AG1 68 A1AG1 H33 H33 H 0 1 N N N N N N -68.349 -22.979 -32.731 7.765 4.899 -1.037 H33 A1AG1 69 A1AG1 H34 H34 H 0 1 N N N N N N -67.253 -21.230 -34.080 9.689 4.127 0.291 H34 A1AG1 70 A1AG1 H35 H35 H 0 1 N N N N N N -68.785 -23.022 -37.641 7.562 0.572 1.306 H35 A1AG1 71 A1AG1 H36 H36 H 0 1 N N N N N N -64.861 -31.812 -39.862 -1.526 2.274 -0.787 H36 A1AG1 72 A1AG1 H37 H37 H 0 1 N N N N N N -63.607 -32.318 -41.044 -2.234 3.279 0.500 H37 A1AG1 73 A1AG1 H38 H38 H 0 1 N N N N N N -63.128 -31.474 -39.533 -0.466 3.169 0.329 H38 A1AG1 74 A1AG1 H39 H39 H 0 1 N N N N N N -65.694 -27.262 -35.974 2.716 -2.748 -1.352 H39 A1AG1 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AG1 CL C27 SING N N 1 A1AG1 C19 C18 SING N N 2 A1AG1 C28 C27 DOUB Y N 3 A1AG1 C28 C23 SING Y N 4 A1AG1 O1 C21 DOUB N N 5 A1AG1 C27 C26 SING Y N 6 A1AG1 C22 C23 SING N N 7 A1AG1 C22 N2 SING N N 8 A1AG1 C18 C20 SING N N 9 A1AG1 C18 C17 SING N N 10 A1AG1 C23 C24 DOUB Y N 11 A1AG1 C21 N2 SING N N 12 A1AG1 C21 C16 SING N N 13 A1AG1 C17 C16 SING N N 14 A1AG1 C26 CL1 SING N N 15 A1AG1 C26 C25 DOUB Y N 16 A1AG1 C24 C25 SING Y N 17 A1AG1 C16 N1 SING N N 18 A1AG1 C14 N1 SING N N 19 A1AG1 C14 C13 SING N N 20 A1AG1 N1 C15 SING N N 21 A1AG1 C13 C4 SING N N 22 A1AG1 C15 O DOUB N N 23 A1AG1 C15 C SING N N 24 A1AG1 C12 C11 DOUB Y N 25 A1AG1 C12 C7 SING Y N 26 A1AG1 C6 C5 SING N N 27 A1AG1 C6 C7 SING N N 28 A1AG1 C4 C5 SING N N 29 A1AG1 C4 N SING N N 30 A1AG1 C11 C10 SING Y N 31 A1AG1 C N SING N N 32 A1AG1 C C1 SING N N 33 A1AG1 C7 C8 DOUB Y N 34 A1AG1 N C3 SING N N 35 A1AG1 C10 C9 DOUB Y N 36 A1AG1 C1 C2 SING N N 37 A1AG1 C8 C9 SING Y N 38 A1AG1 C3 C2 SING N N 39 A1AG1 C2 N3 SING N N 40 A1AG1 C11 H1 SING N N 41 A1AG1 C13 H2 SING N N 42 A1AG1 C13 H3 SING N N 43 A1AG1 C14 H4 SING N N 44 A1AG1 C14 H5 SING N N 45 A1AG1 C16 H6 SING N N 46 A1AG1 C17 H7 SING N N 47 A1AG1 C17 H8 SING N N 48 A1AG1 C18 H9 SING N N 49 A1AG1 C19 H10 SING N N 50 A1AG1 C19 H11 SING N N 51 A1AG1 C19 H12 SING N N 52 A1AG1 C22 H13 SING N N 53 A1AG1 C22 H14 SING N N 54 A1AG1 C24 H15 SING N N 55 A1AG1 C25 H16 SING N N 56 A1AG1 C28 H17 SING N N 57 A1AG1 C1 H18 SING N N 58 A1AG1 C1 H19 SING N N 59 A1AG1 C2 H20 SING N N 60 A1AG1 C3 H21 SING N N 61 A1AG1 C3 H22 SING N N 62 A1AG1 C4 H23 SING N N 63 A1AG1 C5 H24 SING N N 64 A1AG1 C5 H25 SING N N 65 A1AG1 C6 H26 SING N N 66 A1AG1 C6 H27 SING N N 67 A1AG1 N2 H28 SING N N 68 A1AG1 N3 H29 SING N N 69 A1AG1 N3 H30 SING N N 70 A1AG1 C8 H32 SING N N 71 A1AG1 C9 H33 SING N N 72 A1AG1 C10 H34 SING N N 73 A1AG1 C12 H35 SING N N 74 A1AG1 C20 H36 SING N N 75 A1AG1 C20 H37 SING N N 76 A1AG1 C20 H38 SING N N 77 A1AG1 C H39 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AG1 SMILES ACDLabs 12.01 "Clc1ccc(cc1Cl)CNC(=O)C(CC(C)C)N1CCC(CCc2ccccc2)N2CC(N)CC2C1=O" A1AG1 InChI InChI 1.06 "InChI=1S/C29H38Cl2N4O2/c1-19(2)14-26(28(36)33-17-21-9-11-24(30)25(31)15-21)34-13-12-23(10-8-20-6-4-3-5-7-20)35-18-22(32)16-27(35)29(34)37/h3-7,9,11,15,19,22-23,26-27H,8,10,12-14,16-18,32H2,1-2H3,(H,33,36)/t22-,23-,26-,27+/m1/s1" A1AG1 InChIKey InChI 1.06 OUNCNWBQPZONLJ-CIMSBJEKSA-N A1AG1 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@@H](N1CC[C@@H](CCc2ccccc2)N3C[C@H](N)C[C@H]3C1=O)C(=O)NCc4ccc(Cl)c(Cl)c4" A1AG1 SMILES CACTVS 3.385 "CC(C)C[CH](N1CC[CH](CCc2ccccc2)N3C[CH](N)C[CH]3C1=O)C(=O)NCc4ccc(Cl)c(Cl)c4" A1AG1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@H](C(=O)NCc1ccc(c(c1)Cl)Cl)N2CC[C@H](N3C[C@@H](C[C@H]3C2=O)N)CCc4ccccc4" A1AG1 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NCc1ccc(c(c1)Cl)Cl)N2CCC(N3CC(CC3C2=O)N)CCc4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AG1 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-[(5R,6S,8R,9aS)-8-amino-1-oxo-5-(2-phenylethyl)hexahydro-1H-pyrrolo[1,2-a][1,4]diazepin-2(3H)-yl]-N-[(3,4-dichlorophenyl)methyl]-4-methylpentanamide" A1AG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[(5~{R},8~{R},9~{a}~{S})-8-azanyl-1-oxidanylidene-5-(2-phenylethyl)-4,5,7,8,9,9~{a}-hexahydro-3~{H}-pyrrolo[1,2-a][1,4]diazepin-2-yl]-~{N}-[(3,4-dichlorophenyl)methyl]-4-methyl-pentanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AG1 "Create component" 2024-03-04 RCSB A1AG1 "Initial release" 2024-05-15 RCSB #