data_A1AG2 # _chem_comp.id A1AG2 _chem_comp.name "3-{[(3R)-3-({6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}methyl)piperidin-1-yl]methyl}-6-fluoro-2-hydroxybenzaldehyde" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H24 F I N6 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-04 _chem_comp.pdbx_modified_date 2024-10-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.474 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AG2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AUU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AG2 C02 C1 C 0 1 Y N N N N N 5.727 12.161 23.695 -4.359 -1.154 0.428 C02 A1AG2 1 A1AG2 C03 C2 C 0 1 Y N N N N N 6.435 13.198 24.292 -5.530 -1.619 -0.139 C03 A1AG2 2 A1AG2 C04 C3 C 0 1 Y N N N N N 5.746 14.348 24.793 -5.484 -2.520 -1.191 C04 A1AG2 3 A1AG2 C05 C4 C 0 1 Y N N N N N 4.383 14.435 24.711 -4.256 -2.958 -1.678 C05 A1AG2 4 A1AG2 C07 C5 C 0 1 N N N N N N 5.095 16.345 25.676 -5.854 -4.238 -2.569 C07 A1AG2 5 A1AG2 C09 C6 C 0 1 Y N N N N N 3.650 13.393 24.114 -3.082 -2.492 -1.110 C09 A1AG2 6 A1AG2 C10 C7 C 0 1 Y N N N N N 4.327 12.288 23.618 -3.131 -1.586 -0.060 C10 A1AG2 7 A1AG2 C12 C8 C 0 1 Y N N N N N 1.883 10.814 23.979 -1.575 0.620 -0.059 C12 A1AG2 8 A1AG2 C14 C9 C 0 1 Y N N N N N -0.089 10.941 24.830 -2.070 2.349 -1.286 C14 A1AG2 9 A1AG2 C15 C10 C 0 1 Y N N N N N -1.442 11.163 25.174 -2.589 3.312 -2.166 C15 A1AG2 10 A1AG2 C18 C11 C 0 1 Y N N N N N -1.072 10.056 27.181 -0.919 4.764 -1.509 C18 A1AG2 11 A1AG2 C20 C12 C 0 1 Y N N N N N 0.707 10.270 25.712 -0.937 2.686 -0.526 C20 A1AG2 12 A1AG2 C22 C13 C 0 1 N N N N N N 3.119 9.589 25.730 0.454 1.455 1.199 C22 A1AG2 13 A1AG2 C23 C14 C 0 1 N N R N N N 3.126 7.995 25.554 1.693 0.910 0.485 C23 A1AG2 14 A1AG2 C24 C15 C 0 1 N N N N N N 3.347 7.689 24.165 2.177 1.931 -0.548 C24 A1AG2 15 A1AG2 C25 C16 C 0 1 N N N N N N 3.705 6.300 23.927 3.451 1.405 -1.215 C25 A1AG2 16 A1AG2 C26 C17 C 0 1 N N N N N N 4.860 5.806 24.827 4.511 1.142 -0.142 C26 A1AG2 17 A1AG2 C28 C18 C 0 1 N N N N N N 5.482 5.567 26.919 5.040 -0.222 1.787 C28 A1AG2 18 A1AG2 C29 C19 C 0 1 Y N N N N N 5.096 5.635 28.407 6.145 -0.955 1.071 C29 A1AG2 19 A1AG2 C30 C20 C 0 1 Y N N N N N 5.920 6.213 29.367 6.195 -2.335 1.111 C30 A1AG2 20 A1AG2 C31 C21 C 0 1 Y N N N N N 5.525 6.262 30.700 7.205 -3.021 0.458 C31 A1AG2 21 A1AG2 C32 C22 C 0 1 Y N N N N N 4.305 5.721 31.066 8.174 -2.333 -0.243 C32 A1AG2 22 A1AG2 C34 C23 C 0 1 Y N N N N N 3.486 5.153 30.120 8.136 -0.931 -0.293 C34 A1AG2 23 A1AG2 C35 C24 C 0 1 N N N N N N 2.163 4.563 30.587 9.160 -0.190 -1.035 C35 A1AG2 24 A1AG2 C37 C25 C 0 1 Y N N N N N 3.887 5.095 28.799 7.105 -0.243 0.369 C37 A1AG2 25 A1AG2 C39 C26 C 0 1 N N N N N N 4.229 7.382 26.477 2.803 0.661 1.509 C39 A1AG2 26 A1AG2 F33 F1 F 0 1 N N N N N N 3.859 5.740 32.353 9.158 -3.006 -0.879 F33 A1AG2 27 A1AG2 I01 I1 I 0 1 N N N N N N 6.750 10.461 22.976 -4.433 0.208 2.017 I01 A1AG2 28 A1AG2 N13 N1 N 0 1 Y N N N N N 0.658 11.277 23.754 -2.413 1.078 -0.956 N13 A1AG2 29 A1AG2 N16 N2 N 0 1 N N N N N N -2.314 11.872 24.250 -3.706 3.037 -2.938 N16 A1AG2 30 A1AG2 N17 N3 N 0 1 Y N N N N N -1.871 10.702 26.341 -1.984 4.493 -2.241 N17 A1AG2 31 A1AG2 N19 N4 N 0 1 Y N N N N N 0.195 9.838 26.902 -0.400 3.893 -0.668 N19 A1AG2 32 A1AG2 N21 N5 N 0 1 Y N N N N N 1.934 10.209 25.161 -0.646 1.581 0.240 N21 A1AG2 33 A1AG2 N27 N6 N 0 1 N N N N N N 4.557 5.992 26.214 4.000 0.159 0.822 N27 A1AG2 34 A1AG2 O06 O1 O 0 1 N N N N N N 3.947 15.650 25.278 -4.479 -3.832 -2.703 O06 A1AG2 35 A1AG2 O08 O2 O 0 1 N N N N N N 6.209 15.523 25.435 -6.478 -3.120 -1.911 O08 A1AG2 36 A1AG2 O38 O3 O 0 1 N N N N N N 3.075 4.519 27.829 7.051 1.111 0.325 O38 A1AG2 37 A1AG2 S11 S1 S 0 1 N N N N N N 3.299 10.995 22.868 -1.638 -0.988 0.659 S11 A1AG2 38 A1AG2 H031 H1 H 0 0 N N N N N N 7.510 13.135 24.378 -6.483 -1.279 0.239 H031 A1AG2 39 A1AG2 H072 H2 H 0 0 N N N N N N 5.187 17.276 25.097 -6.301 -4.404 -3.550 H072 A1AG2 40 A1AG2 H071 H3 H 0 0 N N N N N N 5.033 16.584 26.748 -5.931 -5.137 -1.958 H071 A1AG2 41 A1AG2 H091 H4 H 0 0 N N N N N N 2.574 13.452 24.043 -2.128 -2.831 -1.487 H091 A1AG2 42 A1AG2 H181 H5 H 0 0 N N N N N N -1.473 9.700 28.119 -0.458 5.736 -1.601 H181 A1AG2 43 A1AG2 H222 H6 H 0 0 N N N N N N 4.007 10.003 25.230 0.164 0.771 1.997 H222 A1AG2 44 A1AG2 H221 H7 H 0 0 N N N N N N 3.159 9.825 26.804 0.679 2.433 1.623 H221 A1AG2 45 A1AG2 H231 H8 H 0 0 N N N N N N 2.147 7.612 25.877 1.443 -0.025 -0.015 H231 A1AG2 46 A1AG2 H242 H9 H 0 0 N N N N N N 2.425 7.911 23.608 1.406 2.079 -1.303 H242 A1AG2 47 A1AG2 H241 H10 H 0 0 N N N N N N 4.162 8.327 23.793 2.389 2.879 -0.053 H241 A1AG2 48 A1AG2 H251 H11 H 0 0 N N N N N N 2.821 5.674 24.117 3.230 0.478 -1.743 H251 A1AG2 49 A1AG2 H252 H12 H 0 0 N N N N N N 4.011 6.193 22.876 3.825 2.146 -1.922 H252 A1AG2 50 A1AG2 H262 H13 H 0 0 N N N N N N 5.029 4.736 24.638 5.415 0.754 -0.612 H262 A1AG2 51 A1AG2 H261 H14 H 0 0 N N N N N N 5.772 6.370 24.581 4.742 2.072 0.376 H261 A1AG2 52 A1AG2 H281 H15 H 0 0 N N N N N N 6.379 6.180 26.749 4.608 -0.871 2.549 H281 A1AG2 53 A1AG2 H282 H16 H 0 0 N N N N N N 5.695 4.523 26.647 5.444 0.674 2.258 H282 A1AG2 54 A1AG2 H301 H17 H 0 0 N N N N N N 6.874 6.627 29.075 5.441 -2.883 1.657 H301 A1AG2 55 A1AG2 H311 H18 H 0 0 N N N N N N 6.164 6.718 31.442 7.234 -4.100 0.497 H311 A1AG2 56 A1AG2 H1 H19 H 0 1 N N N N N N 1.832 4.653 31.611 9.949 -0.723 -1.546 H1 A1AG2 57 A1AG2 H391 H22 H 0 0 N N N N N N 3.882 7.458 27.518 3.043 1.594 2.019 H391 A1AG2 58 A1AG2 H392 H23 H 0 0 N N N N N N 5.146 7.977 26.352 2.467 -0.076 2.238 H392 A1AG2 59 A1AG2 H161 H24 H 0 0 N N N N N N -3.232 11.937 24.641 -4.139 2.172 -2.875 H161 A1AG2 60 A1AG2 H162 H25 H 0 0 N N N N N N -1.954 12.791 24.090 -4.055 3.711 -3.543 H162 A1AG2 61 A1AG2 H381 H27 H 0 0 N N N N N N 2.294 4.166 28.238 7.536 1.547 1.039 H381 A1AG2 62 A1AG2 O1 O4 O 0 1 N N N N N N 1.404 3.904 29.633 9.123 1.022 -1.075 O1 A1AG2 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AG2 C02 I01 SING N N 1 A1AG2 C03 C02 DOUB Y N 2 A1AG2 C04 C03 SING Y N 3 A1AG2 C05 C04 DOUB Y N 4 A1AG2 C07 O06 SING N N 5 A1AG2 O08 C07 SING N N 6 A1AG2 O06 C05 SING N N 7 A1AG2 C09 C05 SING Y N 8 A1AG2 C10 C09 DOUB Y N 9 A1AG2 S11 C10 SING N N 10 A1AG2 C12 S11 SING N N 11 A1AG2 N13 C12 DOUB Y N 12 A1AG2 C14 N13 SING Y N 13 A1AG2 C15 C14 DOUB Y N 14 A1AG2 N16 C15 SING N N 15 A1AG2 N17 C15 SING Y N 16 A1AG2 C18 N17 DOUB Y N 17 A1AG2 N19 C18 SING Y N 18 A1AG2 C20 N19 DOUB Y N 19 A1AG2 N21 C20 SING Y N 20 A1AG2 C22 N21 SING N N 21 A1AG2 C23 C22 SING N N 22 A1AG2 C24 C23 SING N N 23 A1AG2 C25 C24 SING N N 24 A1AG2 C26 C25 SING N N 25 A1AG2 N27 C26 SING N N 26 A1AG2 C29 C28 SING N N 27 A1AG2 C30 C29 DOUB Y N 28 A1AG2 C31 C30 SING Y N 29 A1AG2 C32 C31 DOUB Y N 30 A1AG2 F33 C32 SING N N 31 A1AG2 C34 C32 SING Y N 32 A1AG2 C35 C34 SING N N 33 A1AG2 C37 C34 DOUB Y N 34 A1AG2 O38 C37 SING N N 35 A1AG2 C28 N27 SING N N 36 A1AG2 C39 N27 SING N N 37 A1AG2 C02 C10 SING Y N 38 A1AG2 C04 O08 SING N N 39 A1AG2 C12 N21 SING Y N 40 A1AG2 C14 C20 SING Y N 41 A1AG2 C23 C39 SING N N 42 A1AG2 C29 C37 SING Y N 43 A1AG2 C03 H031 SING N N 44 A1AG2 C07 H072 SING N N 45 A1AG2 C07 H071 SING N N 46 A1AG2 C09 H091 SING N N 47 A1AG2 C18 H181 SING N N 48 A1AG2 C22 H222 SING N N 49 A1AG2 C22 H221 SING N N 50 A1AG2 C23 H231 SING N N 51 A1AG2 C24 H242 SING N N 52 A1AG2 C24 H241 SING N N 53 A1AG2 C25 H251 SING N N 54 A1AG2 C25 H252 SING N N 55 A1AG2 C26 H262 SING N N 56 A1AG2 C26 H261 SING N N 57 A1AG2 C28 H281 SING N N 58 A1AG2 C28 H282 SING N N 59 A1AG2 C30 H301 SING N N 60 A1AG2 C31 H311 SING N N 61 A1AG2 C35 H1 SING N N 62 A1AG2 C39 H391 SING N N 63 A1AG2 C39 H392 SING N N 64 A1AG2 N16 H161 SING N N 65 A1AG2 N16 H162 SING N N 66 A1AG2 O38 H381 SING N N 67 A1AG2 C35 O1 DOUB N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AG2 SMILES ACDLabs 12.01 "Fc1ccc(CN2CCCC(C2)Cn2c3ncnc(N)c3nc2Sc2cc3OCOc3cc2I)c(O)c1C=O" A1AG2 InChI InChI 1.06 "InChI=1S/C26H24FIN6O4S/c27-17-4-3-15(23(36)16(17)11-35)10-33-5-1-2-14(8-33)9-34-25-22(24(29)30-12-31-25)32-26(34)39-21-7-20-19(6-18(21)28)37-13-38-20/h3-4,6-7,11-12,14,36H,1-2,5,8-10,13H2,(H2,29,30,31)/t14-/m0/s1" A1AG2 InChIKey InChI 1.06 KTMOYNRHBABLKL-AWEZNQCLSA-N A1AG2 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(C[C@@H]3CCCN(C3)Cc4ccc(F)c(C=O)c4O)c(Sc5cc6OCOc6cc5I)nc12" A1AG2 SMILES CACTVS 3.385 "Nc1ncnc2n(C[CH]3CCCN(C3)Cc4ccc(F)c(C=O)c4O)c(Sc5cc6OCOc6cc5I)nc12" A1AG2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1CN2CCC[C@@H](C2)Cn3c4c(c(ncn4)N)nc3Sc5cc6c(cc5I)OCO6)O)C=O)F" A1AG2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1CN2CCCC(C2)Cn3c4c(c(ncn4)N)nc3Sc5cc6c(cc5I)OCO6)O)C=O)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AG2 "SYSTEMATIC NAME" ACDLabs 12.01 "3-{[(3R)-3-({6-amino-8-[(6-iodo-2H-1,3-benzodioxol-5-yl)sulfanyl]-9H-purin-9-yl}methyl)piperidin-1-yl]methyl}-6-fluoro-2-hydroxybenzaldehyde" A1AG2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[(3~{S})-3-[[6-azanyl-8-[(6-iodanyl-1,3-benzodioxol-5-yl)sulfanyl]purin-9-yl]methyl]piperidin-1-yl]methyl]-6-fluoranyl-2-oxidanyl-benzaldehyde" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AG2 "Create component" 2024-03-04 RCSB A1AG2 "Modify PCM" 2024-09-27 PDBE A1AG2 "Initial release" 2024-10-16 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AG2 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C35 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #