data_A1AG3 # _chem_comp.id A1AG3 _chem_comp.name "(3R)-1-[(7P)-7-(8-ethyl-7-fluoro-3-hydroxynaphthalen-1-yl)-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]-3-methylpiperidin-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H36 F3 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-04 _chem_comp.pdbx_modified_date 2026-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 607.666 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AG3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AG3 C1 C1 C 0 1 N N N N N N ? ? ? 3.116 -0.121 -1.663 C1 A1AG3 1 A1AG3 C6 C2 C 0 1 Y N N N N N ? ? ? 5.694 -2.111 0.331 C6 A1AG3 2 A1AG3 C7 C3 C 0 1 Y N N N N N ? ? ? 5.920 -2.506 1.660 C7 A1AG3 3 A1AG3 C9 C4 C 0 1 Y N N N N N ? ? ? 3.905 -1.374 2.347 C9 A1AG3 4 A1AG3 C5 C5 C 0 1 Y N N N N N ? ? ? 6.582 -2.478 -0.696 C5 A1AG3 5 A1AG3 C4 C6 C 0 1 Y N N N N N ? ? ? 6.333 -2.085 -1.975 C4 A1AG3 6 A1AG3 C3 C7 C 0 1 Y N N N N N ? ? ? 5.208 -1.320 -2.283 C3 A1AG3 7 A1AG3 C12 C8 C 0 1 Y N N N N N ? ? ? 2.455 -0.156 0.740 C12 A1AG3 8 A1AG3 C2 C9 C 0 1 Y N N N N N ? ? ? 4.326 -0.946 -1.311 C2 A1AG3 9 A1AG3 N N1 N 0 1 Y N N N N N ? ? ? 2.570 1.170 0.648 N A1AG3 10 A1AG3 C C10 C 0 1 N N N N N N ? ? ? 3.459 1.365 -1.542 C A1AG3 11 A1AG3 O O1 O 0 1 N N N N N N ? ? ? -3.352 -0.297 -0.371 O A1AG3 12 A1AG3 C10 C11 C 0 1 Y N N N N N ? ? ? 3.654 -0.968 1.049 C10 A1AG3 13 A1AG3 C11 C12 C 0 1 Y N N N N N ? ? ? 4.552 -1.334 0.017 C11 A1AG3 14 A1AG3 C13 C13 C 0 1 Y N N N N N ? ? ? 1.233 -0.791 0.559 C13 A1AG3 15 A1AG3 C14 C14 C 0 1 Y N N N N N ? ? ? 0.108 -0.003 0.273 C14 A1AG3 16 A1AG3 C15 C15 C 0 1 Y N N N N N ? ? ? 0.278 1.403 0.184 C15 A1AG3 17 A1AG3 C16 C16 C 0 1 Y N N N N N ? ? ? 1.548 1.951 0.382 C16 A1AG3 18 A1AG3 C17 C17 C 0 1 Y N N N N N ? ? ? -0.859 2.197 -0.104 C17 A1AG3 19 A1AG3 C18 C18 C 0 1 Y N N N N N ? ? ? -2.135 0.265 -0.184 C18 A1AG3 20 A1AG3 C19 C19 C 0 1 N N N N N N ? ? ? -3.433 -1.720 -0.264 C19 A1AG3 21 A1AG3 C20 C20 C 0 1 N N S N N N ? ? ? -4.876 -2.168 -0.505 C20 A1AG3 22 A1AG3 C21 C21 C 0 1 N N N N N N ? ? ? -5.348 -1.756 -1.913 C21 A1AG3 23 A1AG3 C22 C22 C 0 1 N N N N N N ? ? ? -5.132 -3.049 -2.743 C22 A1AG3 24 A1AG3 C23 C23 C 0 1 N N N N N N ? ? ? -5.495 -4.146 -1.712 C23 A1AG3 25 A1AG3 C24 C24 C 0 1 N N N N N N ? ? ? -5.968 -3.952 0.670 C24 A1AG3 26 A1AG3 C25 C25 C 0 1 N N R N N N ? ? ? -5.964 -2.698 1.590 C25 A1AG3 27 A1AG3 C26 C26 C 0 1 N N N N N N ? ? ? -5.821 -1.556 0.549 C26 A1AG3 28 A1AG3 C27 C27 C 0 1 N N N N N N ? ? ? -1.202 4.034 -1.523 C27 A1AG3 29 A1AG3 C28 C28 C 0 1 N N N N N N ? ? ? -0.941 5.536 -1.649 C28 A1AG3 30 A1AG3 C29 C29 C 0 1 N N N N N N ? ? ? -1.701 6.275 -0.544 C29 A1AG3 31 A1AG3 C30 C30 C 0 1 N N R N N N ? ? ? -1.255 5.737 0.819 C30 A1AG3 32 A1AG3 C31 C31 C 0 1 N N N N N N ? ? ? 0.237 6.014 1.014 C31 A1AG3 33 A1AG3 C32 C32 C 0 1 N N N N N N ? ? ? -1.507 4.229 0.873 C32 A1AG3 34 A1AG3 C8 C33 C 0 1 Y N N N N N ? ? ? 5.033 -2.138 2.647 C8 A1AG3 35 A1AG3 F F1 F 0 1 N N N N N N ? ? ? -7.175 -2.579 2.280 F A1AG3 36 A1AG3 F1 F2 F 0 1 N N N N N N ? ? ? 1.131 -2.134 0.655 F1 A1AG3 37 A1AG3 F2 F3 F 0 1 N N N N N N ? ? ? 4.988 -0.944 -3.562 F2 A1AG3 38 A1AG3 N1 N2 N 0 1 Y N N N N N ? ? ? -2.023 1.585 -0.276 N1 A1AG3 39 A1AG3 N2 N3 N 0 1 Y N N N N N ? ? ? -1.110 -0.523 0.082 N2 A1AG3 40 A1AG3 N3 N4 N 0 1 N N N N N N ? ? ? -4.994 -3.638 -0.399 N3 A1AG3 41 A1AG3 N4 N5 N 0 1 N N N N N N ? ? ? -0.758 3.567 -0.203 N4 A1AG3 42 A1AG3 O1 O2 O 0 1 N N N N N N ? ? ? -2.000 6.383 1.853 O1 A1AG3 43 A1AG3 O2 O3 O 0 1 N N N N N N ? ? ? 5.259 -2.525 3.930 O2 A1AG3 44 A1AG3 H4 H1 H 0 1 N N N N N N ? ? ? 2.811 -0.341 -2.686 H4 A1AG3 45 A1AG3 H5 H2 H 0 1 N N N N N N ? ? ? 2.300 -0.362 -0.981 H5 A1AG3 46 A1AG3 H8 H3 H 0 1 N N N N N N ? ? ? 6.788 -3.098 1.908 H8 A1AG3 47 A1AG3 H9 H4 H 0 1 N N N N N N ? ? ? 3.222 -1.096 3.136 H9 A1AG3 48 A1AG3 H7 H5 H 0 1 N N N N N N ? ? ? 7.457 -3.069 -0.471 H7 A1AG3 49 A1AG3 H6 H6 H 0 1 N N N N N N ? ? ? 7.016 -2.368 -2.762 H6 A1AG3 50 A1AG3 H3 H7 H 0 1 N N N N N N ? ? ? 3.957 1.547 -0.589 H3 A1AG3 51 A1AG3 H2 H8 H 0 1 N N N N N N ? ? ? 4.122 1.653 -2.358 H2 A1AG3 52 A1AG3 H1 H9 H 0 1 N N N N N N ? ? ? 2.544 1.955 -1.592 H1 A1AG3 53 A1AG3 H10 H10 H 0 1 N N N N N N ? ? ? 1.690 3.020 0.318 H10 A1AG3 54 A1AG3 H12 H11 H 0 1 N N N N N N ? ? ? -2.782 -2.178 -1.008 H12 A1AG3 55 A1AG3 H11 H12 H 0 1 N N N N N N ? ? ? -3.119 -2.028 0.733 H11 A1AG3 56 A1AG3 H13 H13 H 0 1 N N N N N N ? ? ? -6.402 -1.477 -1.901 H13 A1AG3 57 A1AG3 H14 H14 H 0 1 N N N N N N ? ? ? -4.739 -0.939 -2.300 H14 A1AG3 58 A1AG3 H16 H15 H 0 1 N N N N N N ? ? ? -5.805 -3.080 -3.600 H16 A1AG3 59 A1AG3 H15 H16 H 0 1 N N N N N N ? ? ? -4.094 -3.139 -3.061 H15 A1AG3 60 A1AG3 H17 H17 H 0 1 N N N N N N ? ? ? -6.576 -4.283 -1.670 H17 A1AG3 61 A1AG3 H18 H18 H 0 1 N N N N N N ? ? ? -5.005 -5.085 -1.970 H18 A1AG3 62 A1AG3 H20 H19 H 0 1 N N N N N N ? ? ? -5.640 -4.823 1.237 H20 A1AG3 63 A1AG3 H19 H20 H 0 1 N N N N N N ? ? ? -6.955 -4.129 0.243 H19 A1AG3 64 A1AG3 H H21 H 0 1 N N N N N N ? ? ? -5.123 -2.725 2.283 H A1AG3 65 A1AG3 H22 H22 H 0 1 N N N N N N ? ? ? -5.371 -0.674 1.004 H22 A1AG3 66 A1AG3 H21 H23 H 0 1 N N N N N N ? ? ? -6.787 -1.314 0.106 H21 A1AG3 67 A1AG3 H24 H24 H 0 1 N N N N N N ? ? ? -2.269 3.839 -1.637 H24 A1AG3 68 A1AG3 H23 H25 H 0 1 N N N N N N ? ? ? -0.651 3.503 -2.300 H23 A1AG3 69 A1AG3 H26 H26 H 0 1 N N N N N N ? ? ? 0.127 5.730 -1.549 H26 A1AG3 70 A1AG3 H25 H27 H 0 1 N N N N N N ? ? ? -1.284 5.885 -2.623 H25 A1AG3 71 A1AG3 H28 H28 H 0 1 N N N N N N ? ? ? -1.483 7.342 -0.603 H28 A1AG3 72 A1AG3 H27 H29 H 0 1 N N N N N N ? ? ? -2.772 6.115 -0.668 H27 A1AG3 73 A1AG3 H30 H30 H 0 1 N N N N N N ? ? ? 0.553 5.630 1.984 H30 A1AG3 74 A1AG3 H31 H31 H 0 1 N N N N N N ? ? ? 0.804 5.522 0.225 H31 A1AG3 75 A1AG3 H29 H32 H 0 1 N N N N N N ? ? ? 0.415 7.089 0.974 H29 A1AG3 76 A1AG3 H33 H33 H 0 1 N N N N N N ? ? ? -1.178 3.840 1.837 H33 A1AG3 77 A1AG3 H32 H34 H 0 1 N N N N N N ? ? ? -2.572 4.034 0.747 H32 A1AG3 78 A1AG3 H34 H36 H 0 1 N N N N N N ? ? ? -1.889 7.343 1.877 H34 A1AG3 79 A1AG3 H35 H37 H 0 1 N N N N N N ? ? ? 4.861 -3.376 4.160 H35 A1AG3 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AG3 F2 C3 SING N N 1 A1AG3 C3 C4 DOUB Y N 2 A1AG3 C3 C2 SING Y N 3 A1AG3 C4 C5 SING Y N 4 A1AG3 C5 C6 DOUB Y N 5 A1AG3 C6 C11 SING Y N 6 A1AG3 C6 C7 SING Y N 7 A1AG3 C11 C2 DOUB Y N 8 A1AG3 C11 C10 SING Y N 9 A1AG3 C2 C1 SING N N 10 A1AG3 C1 C SING N N 11 A1AG3 C10 C9 DOUB Y N 12 A1AG3 C10 C12 SING N N 13 A1AG3 C9 C8 SING Y N 14 A1AG3 C8 O2 SING N N 15 A1AG3 C8 C7 DOUB Y N 16 A1AG3 C12 N DOUB Y N 17 A1AG3 C12 C13 SING Y N 18 A1AG3 N C16 SING Y N 19 A1AG3 C16 C15 DOUB Y N 20 A1AG3 C15 C17 SING Y N 21 A1AG3 C15 C14 SING Y N 22 A1AG3 C17 N4 SING N N 23 A1AG3 C17 N1 DOUB Y N 24 A1AG3 N4 C32 SING N N 25 A1AG3 N4 C27 SING N N 26 A1AG3 C32 C30 SING N N 27 A1AG3 C30 O1 SING N N 28 A1AG3 C30 C31 SING N N 29 A1AG3 C30 C29 SING N N 30 A1AG3 C29 C28 SING N N 31 A1AG3 C28 C27 SING N N 32 A1AG3 N1 C18 SING Y N 33 A1AG3 C18 N2 DOUB Y N 34 A1AG3 C18 O SING N N 35 A1AG3 N2 C14 SING Y N 36 A1AG3 C14 C13 DOUB Y N 37 A1AG3 C13 F1 SING N N 38 A1AG3 O C19 SING N N 39 A1AG3 C19 C20 SING N N 40 A1AG3 C20 C26 SING N N 41 A1AG3 C20 N3 SING N N 42 A1AG3 C20 C21 SING N N 43 A1AG3 C26 C25 SING N N 44 A1AG3 C25 F SING N N 45 A1AG3 C25 C24 SING N N 46 A1AG3 C24 N3 SING N N 47 A1AG3 N3 C23 SING N N 48 A1AG3 C23 C22 SING N N 49 A1AG3 C22 C21 SING N N 50 A1AG3 C1 H4 SING N N 51 A1AG3 C1 H5 SING N N 52 A1AG3 C7 H8 SING N N 53 A1AG3 C9 H9 SING N N 54 A1AG3 C5 H7 SING N N 55 A1AG3 C4 H6 SING N N 56 A1AG3 C H3 SING N N 57 A1AG3 C H2 SING N N 58 A1AG3 C H1 SING N N 59 A1AG3 C16 H10 SING N N 60 A1AG3 C19 H12 SING N N 61 A1AG3 C19 H11 SING N N 62 A1AG3 C21 H13 SING N N 63 A1AG3 C21 H14 SING N N 64 A1AG3 C22 H16 SING N N 65 A1AG3 C22 H15 SING N N 66 A1AG3 C23 H17 SING N N 67 A1AG3 C23 H18 SING N N 68 A1AG3 C24 H20 SING N N 69 A1AG3 C24 H19 SING N N 70 A1AG3 C25 H SING N N 71 A1AG3 C26 H22 SING N N 72 A1AG3 C26 H21 SING N N 73 A1AG3 C27 H24 SING N N 74 A1AG3 C27 H23 SING N N 75 A1AG3 C28 H26 SING N N 76 A1AG3 C28 H25 SING N N 77 A1AG3 C29 H28 SING N N 78 A1AG3 C29 H27 SING N N 79 A1AG3 C31 H30 SING N N 80 A1AG3 C31 H31 SING N N 81 A1AG3 C31 H29 SING N N 82 A1AG3 C32 H33 SING N N 83 A1AG3 C32 H32 SING N N 84 A1AG3 O1 H34 SING N N 85 A1AG3 O2 H35 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AG3 SMILES ACDLabs 12.01 "FC1CC2(CCCN2C1)COc1nc2c(F)c(ncc2c(n1)N1CCCC(C)(O)C1)c1cc(O)cc2ccc(F)c(CC)c21" A1AG3 InChI InChI 1.06 "InChI=1S/C33H36F3N5O3/c1-3-22-25(35)7-6-19-12-21(42)13-23(26(19)22)28-27(36)29-24(15-37-28)30(40-10-4-8-32(2,43)17-40)39-31(38-29)44-18-33-9-5-11-41(33)16-20(34)14-33/h6-7,12-13,15,20,42-43H,3-5,8-11,14,16-18H2,1-2H3/t20-,32-,33+/m1/s1" A1AG3 InChIKey InChI 1.06 RZYWNBKMTZABBP-PAXFXPPDSA-N A1AG3 SMILES_CANONICAL CACTVS 3.385 "CCc1c(F)ccc2cc(O)cc(c3ncc4c(nc(OC[C@@]56CCCN5C[C@H](F)C6)nc4c3F)N7CCC[C@@](C)(O)C7)c12" A1AG3 SMILES CACTVS 3.385 "CCc1c(F)ccc2cc(O)cc(c3ncc4c(nc(OC[C]56CCCN5C[CH](F)C6)nc4c3F)N7CCC[C](C)(O)C7)c12" A1AG3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(ccc2c1c(cc(c2)O)c3c(c4c(cn3)c(nc(n4)OC[C@@]56CCCN5C[C@@H](C6)F)N7CCC[C@@](C7)(C)O)F)F" A1AG3 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(ccc2c1c(cc(c2)O)c3c(c4c(cn3)c(nc(n4)OCC56CCCN5CC(C6)F)N7CCCC(C7)(C)O)F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AG3 "SYSTEMATIC NAME" ACDLabs 12.01 "(3R)-1-[(7P)-7-(8-ethyl-7-fluoro-3-hydroxynaphthalen-1-yl)-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]-3-methylpiperidin-3-ol" A1AG3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{R})-1-[7-(8-ethyl-7-fluoranyl-3-oxidanyl-naphthalen-1-yl)-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]pyrido[4,3-d]pyrimidin-4-yl]-3-methyl-piperidin-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AG3 "Create component" 2024-03-04 RCSB A1AG3 "Modify coordinates" 2026-07-17 RCSB A1AG3 "Initial release" 2026-07-22 RCSB #