data_A1AG7 # _chem_comp.id A1AG7 _chem_comp.name "(2P)-2-(1-benzyl-3-phenyl-1H-pyrazol-4-yl)-5-chloro-1-[(1R)-1-cyclohexyl-2-(methylamino)-2-oxoethyl]-1H-1,3-benzimidazole-6-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H32 Cl N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-05 _chem_comp.pdbx_modified_date 2025-03-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.092 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AG7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AVN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AG7 C4 C1 C 0 1 Y N N N N N -36.794 18.469 -0.974 2.413 0.564 0.274 C4 A1AG7 1 A1AG7 N3 N1 N 0 1 Y N N N N N -35.763 20.080 4.377 -3.305 0.630 0.689 N3 A1AG7 2 A1AG7 C2 C2 C 0 1 N N N N N N -37.939 17.298 -4.308 6.156 0.700 0.456 C2 A1AG7 3 A1AG7 N1 N2 N 0 1 N N N N N N -39.539 18.658 2.479 0.377 0.819 3.564 N1 A1AG7 4 A1AG7 C7 C3 C 0 1 N N N N N N -40.866 19.196 2.715 -0.549 1.429 4.521 C7 A1AG7 5 A1AG7 C6 C4 C 0 1 N N N N N N -39.159 18.212 1.289 -0.036 -0.196 2.779 C6 A1AG7 6 A1AG7 O2 O1 O 0 1 N N N N N N -39.856 18.298 0.275 -1.174 -0.605 2.865 O2 A1AG7 7 A1AG7 C5 C5 C 0 1 N N R N N N -37.756 17.594 1.249 0.918 -0.824 1.795 C5 A1AG7 8 A1AG7 CL CL1 CL 0 0 N N N N N N -35.652 19.304 -5.210 5.839 2.606 -1.850 CL A1AG7 9 A1AG7 C C6 C 0 1 Y N N N N N -36.161 19.002 -3.582 4.516 1.827 -1.040 C A1AG7 10 A1AG7 C1 C7 C 0 1 Y N N N N N -37.170 18.076 -3.296 4.770 0.953 0.027 C1 A1AG7 11 A1AG7 O O2 O 0 1 N N N N N N -38.355 16.170 -4.063 6.402 -0.140 1.482 O A1AG7 12 A1AG7 O1 O3 O 0 1 N N N N N N -38.173 17.918 -5.435 7.079 1.248 -0.114 O1 A1AG7 13 A1AG7 C3 C8 C 0 1 Y N N N N N -37.497 17.804 -1.966 3.711 0.322 0.683 C3 A1AG7 14 A1AG7 N N3 N 0 1 Y N N N N N -36.855 18.428 0.422 1.175 0.114 0.699 N A1AG7 15 A1AG7 C8 C9 C 0 1 N N N N N N -37.715 16.124 0.831 0.301 -2.107 1.235 C8 A1AG7 16 A1AG7 C9 C10 C 0 1 N N N N N N -38.887 15.309 1.417 0.097 -3.112 2.370 C9 A1AG7 17 A1AG7 C10 C11 C 0 1 N N N N N N -38.442 14.074 2.198 -0.520 -4.396 1.809 C10 A1AG7 18 A1AG7 C11 C12 C 0 1 N N N N N N -37.485 13.214 1.385 0.417 -4.995 0.759 C11 A1AG7 19 A1AG7 C12 C13 C 0 1 N N N N N N -36.261 14.017 0.899 0.621 -3.990 -0.376 C12 A1AG7 20 A1AG7 C13 C14 C 0 1 N N N N N N -36.359 15.511 1.207 1.238 -2.707 0.184 C13 A1AG7 21 A1AG7 C32 C15 C 0 1 Y N N N N N -35.487 19.679 -2.584 3.237 2.074 -1.442 C32 A1AG7 22 A1AG7 C31 C16 C 0 1 Y N N N N N -35.814 19.411 -1.262 2.164 1.448 -0.794 C31 A1AG7 23 A1AG7 N4 N4 N 0 1 Y N N N N N -35.294 19.949 -0.091 0.828 1.496 -0.968 N4 A1AG7 24 A1AG7 C14 C17 C 0 1 Y N N N N N -35.931 19.324 0.876 0.237 0.710 -0.098 C14 A1AG7 25 A1AG7 C15 C18 C 0 1 Y N N N N N -35.565 19.487 2.285 -1.221 0.508 0.009 C15 A1AG7 26 A1AG7 C16 C19 C 0 1 Y N N N N N -34.485 18.994 3.072 -2.054 -0.336 -0.851 C16 A1AG7 27 A1AG7 C17 C20 C 0 1 Y N N N N N -33.254 18.284 2.656 -1.592 -1.152 -1.999 C17 A1AG7 28 A1AG7 C18 C21 C 0 1 Y N N N N N -32.226 18.050 3.574 -2.193 -2.380 -2.271 C18 A1AG7 29 A1AG7 C19 C22 C 0 1 Y N N N N N -31.050 17.437 3.169 -1.759 -3.136 -3.342 C19 A1AG7 30 A1AG7 C20 C23 C 0 1 Y N N N N N -30.886 17.047 1.851 -0.730 -2.677 -4.144 C20 A1AG7 31 A1AG7 C21 C24 C 0 1 Y N N N N N -31.903 17.266 0.935 -0.129 -1.459 -3.878 C21 A1AG7 32 A1AG7 C22 C25 C 0 1 Y N N N N N -33.078 17.880 1.333 -0.559 -0.692 -2.814 C22 A1AG7 33 A1AG7 N2 N5 N 0 1 Y N N N N N -34.631 19.336 4.349 -3.289 -0.232 -0.412 N2 A1AG7 34 A1AG7 C30 C26 C 0 1 Y N N N N N -36.358 20.179 3.175 -2.058 1.072 0.932 C30 A1AG7 35 A1AG7 C23 C27 C 0 1 N N N N N N -36.122 20.766 5.623 -4.497 1.000 1.456 C23 A1AG7 36 A1AG7 C24 C28 C 0 1 Y N N N N N -35.341 22.047 5.821 -5.540 1.561 0.524 C24 A1AG7 37 A1AG7 C25 C29 C 0 1 Y N N N N N -34.754 22.703 4.745 -5.569 2.917 0.255 C25 A1AG7 38 A1AG7 C26 C30 C 0 1 Y N N N N N -34.087 23.902 4.927 -6.525 3.431 -0.600 C26 A1AG7 39 A1AG7 C27 C31 C 0 1 Y N N N N N -34.002 24.464 6.185 -7.452 2.590 -1.186 C27 A1AG7 40 A1AG7 C28 C32 C 0 1 Y N N N N N -34.572 23.818 7.261 -7.423 1.234 -0.918 C28 A1AG7 41 A1AG7 C29 C33 C 0 1 Y N N N N N -35.233 22.616 7.082 -6.464 0.719 -0.066 C29 A1AG7 42 A1AG7 H1 H1 H 0 1 N N N N N N -38.890 18.622 3.239 1.288 1.145 3.495 H1 A1AG7 43 A1AG7 H2 H2 H 0 1 N N N N N N -40.956 19.502 3.768 -0.892 0.672 5.227 H2 A1AG7 44 A1AG7 H3 H3 H 0 1 N N N N N N -41.029 20.068 2.064 -0.040 2.227 5.061 H3 A1AG7 45 A1AG7 H4 H4 H 0 1 N N N N N N -41.619 18.426 2.492 -1.405 1.841 3.986 H4 A1AG7 46 A1AG7 H5 H5 H 0 1 N N N N N N -37.372 17.634 2.279 1.855 -1.061 2.298 H5 A1AG7 47 A1AG7 H6 H6 H 0 1 N N N N N N -38.853 15.847 -4.805 7.327 -0.274 1.727 H6 A1AG7 48 A1AG7 H7 H7 H 0 1 N N N N N N -38.274 17.097 -1.718 3.905 -0.352 1.505 H7 A1AG7 49 A1AG7 H8 H8 H 0 1 N N N N N N -37.803 16.087 -0.265 -0.660 -1.877 0.775 H8 A1AG7 50 A1AG7 H9 H9 H 0 1 N N N N N N -39.460 15.960 2.093 1.058 -3.342 2.829 H9 A1AG7 51 A1AG7 H10 H10 H 0 1 N N N N N N -39.532 14.983 0.588 -0.571 -2.685 3.118 H10 A1AG7 52 A1AG7 H11 H11 H 0 1 N N N N N N -39.328 13.476 2.456 -0.666 -5.112 2.618 H11 A1AG7 53 A1AG7 H12 H12 H 0 1 N N N N N N -37.937 14.397 3.120 -1.482 -4.166 1.350 H12 A1AG7 54 A1AG7 H13 H13 H 0 1 N N N N N N -38.020 12.817 0.510 1.378 -5.225 1.218 H13 A1AG7 55 A1AG7 H14 H14 H 0 1 N N N N N N -37.137 12.380 2.012 -0.023 -5.910 0.360 H14 A1AG7 56 A1AG7 H15 H15 H 0 1 N N N N N N -36.170 13.890 -0.190 1.289 -4.417 -1.124 H15 A1AG7 57 A1AG7 H16 H16 H 0 1 N N N N N N -35.363 13.617 1.392 -0.340 -3.760 -0.836 H16 A1AG7 58 A1AG7 H17 H17 H 0 1 N N N N N N -35.572 16.035 0.645 1.384 -1.990 -0.624 H17 A1AG7 59 A1AG7 H18 H18 H 0 1 N N N N N N -36.198 15.656 2.285 2.199 -2.936 0.644 H18 A1AG7 60 A1AG7 H19 H19 H 0 1 N N N N N N -34.722 20.401 -2.827 3.051 2.749 -2.264 H19 A1AG7 61 A1AG7 H20 H20 H 0 1 N N N N N N -32.348 18.348 4.605 -2.997 -2.740 -1.646 H20 A1AG7 62 A1AG7 H21 H21 H 0 1 N N N N N N -30.260 17.263 3.884 -2.224 -4.088 -3.553 H21 A1AG7 63 A1AG7 H22 H22 H 0 1 N N N N N N -29.968 16.573 1.537 -0.394 -3.272 -4.980 H22 A1AG7 64 A1AG7 H23 H23 H 0 1 N N N N N N -31.778 16.957 -0.092 0.671 -1.104 -4.510 H23 A1AG7 65 A1AG7 H24 H24 H 0 1 N N N N N N -33.865 18.048 0.613 -0.090 0.258 -2.608 H24 A1AG7 66 A1AG7 H25 H25 H 0 1 N N N N N N -37.278 20.699 2.951 -1.768 1.752 1.719 H25 A1AG7 67 A1AG7 H26 H26 H 0 1 N N N N N N -37.195 21.007 5.597 -4.894 0.118 1.957 H26 A1AG7 68 A1AG7 H27 H27 H 0 1 N N N N N N -35.917 20.093 6.469 -4.232 1.752 2.200 H27 A1AG7 69 A1AG7 H28 H28 H 0 1 N N N N N N -34.819 22.272 3.757 -4.844 3.574 0.713 H28 A1AG7 70 A1AG7 H29 H29 H 0 1 N N N N N N -33.632 24.399 4.083 -6.549 4.490 -0.810 H29 A1AG7 71 A1AG7 H30 H30 H 0 1 N N N N N N -33.491 25.405 6.325 -8.200 2.992 -1.854 H30 A1AG7 72 A1AG7 H31 H31 H 0 1 N N N N N N -34.502 24.252 8.248 -8.148 0.577 -1.376 H31 A1AG7 73 A1AG7 H32 H32 H 0 1 N N N N N N -35.670 22.115 7.933 -6.438 -0.340 0.140 H32 A1AG7 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AG7 O1 C2 DOUB N N 1 A1AG7 CL C SING N N 2 A1AG7 C2 O SING N N 3 A1AG7 C2 C1 SING N N 4 A1AG7 C C1 DOUB Y N 5 A1AG7 C C32 SING Y N 6 A1AG7 C1 C3 SING Y N 7 A1AG7 C32 C31 DOUB Y N 8 A1AG7 C3 C4 DOUB Y N 9 A1AG7 C31 C4 SING Y N 10 A1AG7 C31 N4 SING Y N 11 A1AG7 C4 N SING Y N 12 A1AG7 N4 C14 DOUB Y N 13 A1AG7 O2 C6 DOUB N N 14 A1AG7 N C14 SING Y N 15 A1AG7 N C5 SING N N 16 A1AG7 C8 C13 SING N N 17 A1AG7 C8 C5 SING N N 18 A1AG7 C8 C9 SING N N 19 A1AG7 C14 C15 SING N N 20 A1AG7 C12 C13 SING N N 21 A1AG7 C12 C11 SING N N 22 A1AG7 C21 C22 DOUB Y N 23 A1AG7 C21 C20 SING Y N 24 A1AG7 C5 C6 SING N N 25 A1AG7 C6 N1 SING N N 26 A1AG7 C22 C17 SING Y N 27 A1AG7 C11 C10 SING N N 28 A1AG7 C9 C10 SING N N 29 A1AG7 C20 C19 DOUB Y N 30 A1AG7 C15 C16 SING Y N 31 A1AG7 C15 C30 DOUB Y N 32 A1AG7 N1 C7 SING N N 33 A1AG7 C17 C16 SING N N 34 A1AG7 C17 C18 DOUB Y N 35 A1AG7 C16 N2 DOUB Y N 36 A1AG7 C19 C18 SING Y N 37 A1AG7 C30 N3 SING Y N 38 A1AG7 N2 N3 SING Y N 39 A1AG7 N3 C23 SING N N 40 A1AG7 C25 C26 DOUB Y N 41 A1AG7 C25 C24 SING Y N 42 A1AG7 C26 C27 SING Y N 43 A1AG7 C23 C24 SING N N 44 A1AG7 C24 C29 DOUB Y N 45 A1AG7 C27 C28 DOUB Y N 46 A1AG7 C29 C28 SING Y N 47 A1AG7 N1 H1 SING N N 48 A1AG7 C7 H2 SING N N 49 A1AG7 C7 H3 SING N N 50 A1AG7 C7 H4 SING N N 51 A1AG7 C5 H5 SING N N 52 A1AG7 O H6 SING N N 53 A1AG7 C3 H7 SING N N 54 A1AG7 C8 H8 SING N N 55 A1AG7 C9 H9 SING N N 56 A1AG7 C9 H10 SING N N 57 A1AG7 C10 H11 SING N N 58 A1AG7 C10 H12 SING N N 59 A1AG7 C11 H13 SING N N 60 A1AG7 C11 H14 SING N N 61 A1AG7 C12 H15 SING N N 62 A1AG7 C12 H16 SING N N 63 A1AG7 C13 H17 SING N N 64 A1AG7 C13 H18 SING N N 65 A1AG7 C32 H19 SING N N 66 A1AG7 C18 H20 SING N N 67 A1AG7 C19 H21 SING N N 68 A1AG7 C20 H22 SING N N 69 A1AG7 C21 H23 SING N N 70 A1AG7 C22 H24 SING N N 71 A1AG7 C30 H25 SING N N 72 A1AG7 C23 H26 SING N N 73 A1AG7 C23 H27 SING N N 74 A1AG7 C25 H28 SING N N 75 A1AG7 C26 H29 SING N N 76 A1AG7 C27 H30 SING N N 77 A1AG7 C28 H31 SING N N 78 A1AG7 C29 H32 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AG7 SMILES ACDLabs 12.01 "CNC(=O)C(C1CCCCC1)n1c2cc(C(=O)O)c(Cl)cc2nc1c1cn(Cc2ccccc2)nc1c1ccccc1" A1AG7 InChI InChI 1.06 "InChI=1S/C33H32ClN5O3/c1-35-32(40)30(23-15-9-4-10-16-23)39-28-17-24(33(41)42)26(34)18-27(28)36-31(39)25-20-38(19-21-11-5-2-6-12-21)37-29(25)22-13-7-3-8-14-22/h2-3,5-8,11-14,17-18,20,23,30H,4,9-10,15-16,19H2,1H3,(H,35,40)(H,41,42)/t30-/m1/s1" A1AG7 InChIKey InChI 1.06 FZXOIQUTLQABCO-SSEXGKCCSA-N A1AG7 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@@H](C1CCCCC1)n2c3cc(C(O)=O)c(Cl)cc3nc2c4cn(Cc5ccccc5)nc4c6ccccc6" A1AG7 SMILES CACTVS 3.385 "CNC(=O)[CH](C1CCCCC1)n2c3cc(C(O)=O)c(Cl)cc3nc2c4cn(Cc5ccccc5)nc4c6ccccc6" A1AG7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H](C1CCCCC1)n2c3cc(c(cc3nc2c4cn(nc4c5ccccc5)Cc6ccccc6)Cl)C(=O)O" A1AG7 SMILES "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(C1CCCCC1)n2c3cc(c(cc3nc2c4cn(nc4c5ccccc5)Cc6ccccc6)Cl)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AG7 "SYSTEMATIC NAME" ACDLabs 12.01 "(2P)-2-(1-benzyl-3-phenyl-1H-pyrazol-4-yl)-5-chloro-1-[(1R)-1-cyclohexyl-2-(methylamino)-2-oxoethyl]-1H-1,3-benzimidazole-6-carboxylic acid" A1AG7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-chloranyl-3-[(1~{R})-1-cyclohexyl-2-(methylamino)-2-oxidanylidene-ethyl]-2-[3-phenyl-1-(phenylmethyl)pyrazol-4-yl]benzimidazole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AG7 "Create component" 2024-03-05 RCSB A1AG7 "Initial release" 2025-03-12 RCSB #