data_A1AG8 # _chem_comp.id A1AG8 _chem_comp.name silvestrol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H38 O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "methyl (1R,2R,3S,3aR,8bS)-6-({(2S,3R,6R)-6-[(1R)-1,2-dihydroxyethyl]-3-methoxy-1,4-dioxan-2-yl}oxy)-1,8b-dihydroxy-8-methoxy-3a-(4-methoxyphenyl)-3-phenyl-2,3,3a,8b-tetrahydro-1H-benzo[b]cyclopenta[d]furan-2-carboxylate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-03-05 _chem_comp.pdbx_modified_date 2024-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 654.658 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AG8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AVR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AG8 C01 C1 C 0 1 N N N N N N 4.540 -10.222 14.570 8.291 1.914 1.155 C01 A1AG8 1 A1AG8 C03 C2 C 0 1 N N R N N N 5.018 -8.195 15.661 5.951 1.416 1.302 C03 A1AG8 2 A1AG8 C04 C3 C 0 1 N N S N N N 5.474 -7.563 17.023 4.698 1.212 0.444 C04 A1AG8 3 A1AG8 C06 C4 C 0 1 N N R N N N 7.582 -7.115 16.138 5.040 -1.157 0.510 C06 A1AG8 4 A1AG8 C07 C5 C 0 1 N N N N N N 7.200 -7.914 14.888 6.292 -0.953 1.367 C07 A1AG8 5 A1AG8 C14 C6 C 0 1 Y N N N N N 5.422 -5.277 17.697 2.338 1.047 0.679 C14 A1AG8 6 A1AG8 C15 C7 C 0 1 Y N N N N N 5.258 -3.986 17.264 1.186 0.966 1.442 C15 A1AG8 7 A1AG8 C16 C8 C 0 1 Y N N N N N 5.710 -2.956 18.093 -0.060 0.886 0.826 C16 A1AG8 8 A1AG8 C17 C9 C 0 1 Y N N N N N 6.327 -3.159 19.290 -0.126 0.883 -0.561 C17 A1AG8 9 A1AG8 C18 C10 C 0 1 Y N N N N N 6.528 -4.449 19.737 1.023 0.967 -1.325 C18 A1AG8 10 A1AG8 C19 C11 C 0 1 Y N N N N N 6.046 -5.531 18.901 2.262 1.055 -0.706 C19 A1AG8 11 A1AG8 C21 C12 C 0 1 N N N N N N 7.380 -6.123 21.291 2.167 1.059 -3.407 C21 A1AG8 12 A1AG8 C22 C13 C 0 1 N N S N N N 6.723 -1.842 19.931 -1.592 0.768 -0.938 C22 A1AG8 13 A1AG8 C23 C14 C 0 1 N N R N N N 6.250 -1.614 21.208 -2.160 2.183 -1.153 C23 A1AG8 14 A1AG8 C24 C15 C 0 1 N N R N N N 5.536 -0.029 21.034 -3.533 2.202 -0.465 C24 A1AG8 15 A1AG8 C25 C16 C 0 1 N N S N N N 4.885 -0.129 19.950 -3.567 1.019 0.512 C25 A1AG8 16 A1AG8 C26 C17 C 0 1 N N R N N N 6.103 -0.751 18.993 -2.220 0.293 0.402 C26 A1AG8 17 A1AG8 C28 C18 C 0 1 Y N N N N N 6.977 0.289 18.367 -2.370 -1.205 0.471 C28 A1AG8 18 A1AG8 C29 C19 C 0 1 Y N N N N N 7.998 1.046 19.053 -1.653 -2.011 -0.394 C29 A1AG8 19 A1AG8 C30 C20 C 0 1 Y N N N N N 8.760 1.990 18.325 -1.788 -3.384 -0.333 C30 A1AG8 20 A1AG8 C31 C21 C 0 1 Y N N N N N 8.508 2.205 16.984 -2.644 -3.955 0.599 C31 A1AG8 21 A1AG8 C32 C22 C 0 1 Y N N N N N 7.486 1.465 16.306 -3.362 -3.144 1.466 C32 A1AG8 22 A1AG8 C33 C23 C 0 1 Y N N N N N 6.756 0.520 17.018 -3.220 -1.771 1.403 C33 A1AG8 23 A1AG8 C35 C24 C 0 1 N N N N N N 10.144 3.855 16.998 -3.678 -5.823 1.644 C35 A1AG8 24 A1AG8 C36 C25 C 0 1 Y N N N N N 4.288 1.124 19.186 -4.688 0.083 0.144 C36 A1AG8 25 A1AG8 C37 C26 C 0 1 Y N N N N N 3.432 0.906 18.101 -4.709 -0.514 -1.103 C37 A1AG8 26 A1AG8 C38 C27 C 0 1 Y N N N N N 2.867 1.965 17.511 -5.738 -1.372 -1.442 C38 A1AG8 27 A1AG8 C39 C28 C 0 1 Y N N N N N 3.126 3.235 17.980 -6.746 -1.635 -0.533 C39 A1AG8 28 A1AG8 C40 C29 C 0 1 Y N N N N N 3.978 3.438 19.088 -6.726 -1.039 0.714 C40 A1AG8 29 A1AG8 C41 C30 C 0 1 Y N N N N N 4.541 2.386 19.696 -5.693 -0.185 1.054 C41 A1AG8 30 A1AG8 C42 C31 C 0 1 N N N N N N 4.528 0.118 22.210 -3.713 3.497 0.285 C42 A1AG8 31 A1AG8 C45 C32 C 0 1 N N N N N N 4.153 0.248 24.576 -3.880 5.871 0.408 C45 A1AG8 32 A1AG8 O02 O1 O 0 1 N N N N N N 4.987 -9.586 15.743 7.084 1.609 0.453 O02 A1AG8 33 A1AG8 O05 O2 O 0 1 N N N N N N 6.833 -7.632 17.214 4.835 0.001 -0.305 O05 A1AG8 34 A1AG8 O08 O3 O 0 1 N N N N N N 5.822 -7.795 14.578 6.156 0.258 2.117 O08 A1AG8 35 A1AG8 O13 O4 O 0 1 N N N N N N 4.968 -6.246 16.816 3.550 1.125 1.290 O13 A1AG8 36 A1AG8 O20 O5 O 0 1 N N N N N N 7.151 -4.708 21.020 0.939 0.970 -2.682 O20 A1AG8 37 A1AG8 O27 O6 O 0 1 N N N N N N 5.576 -1.474 17.810 -1.303 0.808 1.378 O27 A1AG8 38 A1AG8 O34 O7 O 0 1 N N N N N N 9.238 3.144 16.217 -2.779 -5.306 0.661 O34 A1AG8 39 A1AG8 O43 O8 O 0 1 N N N N N N 3.309 0.117 22.044 -3.869 3.484 1.483 O43 A1AG8 40 A1AG8 O44 O9 O 0 1 N N N N N N 5.076 0.208 23.520 -3.701 4.664 -0.378 O44 A1AG8 41 A1AG8 O46 O10 O 0 1 N N N N N N 5.233 -2.303 21.800 -1.297 3.155 -0.558 O46 A1AG8 42 A1AG8 O47 O11 O 0 1 N N N N N N 8.135 -1.751 19.946 -1.829 -0.123 -2.029 O47 A1AG8 43 A1AG8 C09 C33 C 0 1 N N R N N N 9.023 -7.402 16.464 5.225 -2.385 -0.383 C09 A1AG8 44 A1AG8 C10 C34 C 0 1 N N N N N N 9.968 -6.472 15.680 4.030 -2.511 -1.331 C10 A1AG8 45 A1AG8 O11 O12 O 0 1 N N N N N N 9.464 -5.074 15.821 4.145 -3.720 -2.084 O11 A1AG8 46 A1AG8 O12 O13 O 0 1 N N N N N N 9.170 -7.226 17.835 6.425 -2.243 -1.146 O12 A1AG8 47 A1AG8 H012 H1 H 0 0 N N N N N N 4.546 -11.312 14.718 9.103 2.046 0.441 H012 A1AG8 48 A1AG8 H013 H2 H 0 0 N N N N N N 3.517 -9.889 14.339 8.156 2.833 1.726 H013 A1AG8 49 A1AG8 H011 H3 H 0 0 N N N N N N 5.207 -9.962 13.735 8.533 1.097 1.834 H011 A1AG8 50 A1AG8 H031 H4 H 0 0 N N N N N N 3.994 -7.835 15.481 5.819 2.291 1.938 H031 A1AG8 51 A1AG8 H041 H5 H 0 0 N N N N N N 4.930 -8.061 17.839 4.584 2.053 -0.240 H041 A1AG8 52 A1AG8 H061 H6 H 0 0 N N N N N N 7.415 -6.039 15.981 4.175 -1.304 1.157 H061 A1AG8 53 A1AG8 H071 H7 H 0 0 N N N N N N 7.434 -8.975 15.060 6.406 -1.794 2.052 H071 A1AG8 54 A1AG8 H072 H8 H 0 0 N N N N N N 7.788 -7.542 14.036 7.168 -0.886 0.722 H072 A1AG8 55 A1AG8 H151 H9 H 0 0 N N N N N N 4.794 -3.772 16.312 1.253 0.965 2.520 H151 A1AG8 56 A1AG8 H191 H10 H 0 0 N N N N N N 6.178 -6.552 19.226 3.161 1.125 -1.299 H191 A1AG8 57 A1AG8 H212 H11 H 0 0 N N N N N N 7.853 -6.236 22.278 1.958 1.051 -4.477 H212 A1AG8 58 A1AG8 H211 H12 H 0 0 N N N N N N 6.419 -6.658 21.282 2.678 1.985 -3.144 H211 A1AG8 59 A1AG8 H213 H13 H 0 0 N N N N N N 8.041 -6.542 20.518 2.801 0.210 -3.155 H213 A1AG8 60 A1AG8 H231 H14 H 0 0 N N N N N N 7.090 -1.490 21.908 -2.272 2.385 -2.218 H231 A1AG8 61 A1AG8 H241 H15 H 0 0 N N N N N N 6.327 0.734 21.076 -4.322 2.091 -1.209 H241 A1AG8 62 A1AG8 H251 H16 H 0 0 N N N N N N 4.098 -0.896 20.003 -3.708 1.383 1.530 H251 A1AG8 63 A1AG8 H291 H17 H 0 0 N N N N N N 8.177 0.894 20.107 -0.988 -1.566 -1.119 H291 A1AG8 64 A1AG8 H301 H18 H 0 0 N N N N N N 9.543 2.545 18.820 -1.229 -4.014 -1.009 H301 A1AG8 65 A1AG8 H321 H19 H 0 0 N N N N N N 7.286 1.638 15.259 -4.029 -3.586 2.191 H321 A1AG8 66 A1AG8 H331 H20 H 0 0 N N N N N N 5.995 -0.050 16.506 -3.775 -1.140 2.081 H331 A1AG8 67 A1AG8 H353 H21 H 0 0 N N N N N N 10.690 4.572 16.367 -3.347 -5.516 2.636 H353 A1AG8 68 A1AG8 H351 H22 H 0 0 N N N N N N 9.601 4.399 17.785 -4.680 -5.437 1.460 H351 A1AG8 69 A1AG8 H352 H23 H 0 0 N N N N N N 10.857 3.156 17.460 -3.691 -6.912 1.587 H352 A1AG8 70 A1AG8 H371 H24 H 0 0 N N N N N N 3.232 -0.095 17.748 -3.922 -0.308 -1.813 H371 A1AG8 71 A1AG8 H381 H25 H 0 0 N N N N N N 2.208 1.825 16.667 -5.755 -1.838 -2.416 H381 A1AG8 72 A1AG8 H391 H26 H 0 0 N N N N N N 2.672 4.086 17.494 -7.551 -2.306 -0.798 H391 A1AG8 73 A1AG8 H401 H27 H 0 0 N N N N N N 4.175 4.439 19.444 -7.513 -1.244 1.424 H401 A1AG8 74 A1AG8 H411 H28 H 0 0 N N N N N N 5.175 2.518 20.560 -5.674 0.278 2.030 H411 A1AG8 75 A1AG8 H452 H29 H 0 0 N N N N N N 4.692 0.317 25.532 -4.844 5.833 0.917 H452 A1AG8 76 A1AG8 H453 H30 H 0 0 N N N N N N 3.500 1.126 24.459 -3.082 5.945 1.147 H453 A1AG8 77 A1AG8 H451 H31 H 0 0 N N N N N N 3.543 -0.667 24.564 -3.849 6.740 -0.248 H451 A1AG8 78 A1AG8 H461 H32 H 0 0 N N N N N N 5.504 -3.201 21.951 -1.602 4.067 -0.660 H461 A1AG8 79 A1AG8 H471 H33 H 0 0 N N N N N N 8.396 -0.929 20.346 -1.392 0.137 -2.852 H471 A1AG8 80 A1AG8 H091 H34 H 0 0 N N N N N N 9.249 -8.441 16.184 5.292 -3.279 0.237 H091 A1AG8 81 A1AG8 H102 H35 H 0 0 N N N N N N 9.978 -6.760 14.618 3.107 -2.530 -0.752 H102 A1AG8 82 A1AG8 H101 H36 H 0 0 N N N N N N 10.987 -6.544 16.089 4.015 -1.659 -2.011 H101 A1AG8 83 A1AG8 H111 H37 H 0 0 N N N N N N 10.034 -4.482 15.344 3.420 -3.865 -2.708 H111 A1AG8 84 A1AG8 H121 H38 H 0 0 N N N N N N 10.071 -7.399 18.082 6.435 -1.467 -1.722 H121 A1AG8 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AG8 O02 C01 SING N N 1 A1AG8 C03 O02 SING N N 2 A1AG8 C04 C03 SING N N 3 A1AG8 C06 O05 SING N N 4 A1AG8 O08 C07 SING N N 5 A1AG8 C07 C06 SING N N 6 A1AG8 C09 C06 SING N N 7 A1AG8 O11 C10 SING N N 8 A1AG8 C10 C09 SING N N 9 A1AG8 O12 C09 SING N N 10 A1AG8 O05 C04 SING N N 11 A1AG8 O13 C04 SING N N 12 A1AG8 C14 O13 SING N N 13 A1AG8 C15 C14 DOUB Y N 14 A1AG8 C16 C15 SING Y N 15 A1AG8 C17 C16 DOUB Y N 16 A1AG8 C19 C18 DOUB Y N 17 A1AG8 O20 C18 SING N N 18 A1AG8 C21 O20 SING N N 19 A1AG8 C18 C17 SING Y N 20 A1AG8 C22 C17 SING N N 21 A1AG8 O27 C26 SING N N 22 A1AG8 C28 C26 SING N N 23 A1AG8 C29 C28 DOUB Y N 24 A1AG8 C30 C29 SING Y N 25 A1AG8 C31 C30 DOUB Y N 26 A1AG8 C33 C32 DOUB Y N 27 A1AG8 C32 C31 SING Y N 28 A1AG8 O34 C31 SING N N 29 A1AG8 C35 O34 SING N N 30 A1AG8 C26 C25 SING N N 31 A1AG8 C36 C25 SING N N 32 A1AG8 C37 C36 DOUB Y N 33 A1AG8 C38 C37 SING Y N 34 A1AG8 C39 C38 DOUB Y N 35 A1AG8 C40 C39 SING Y N 36 A1AG8 C41 C40 DOUB Y N 37 A1AG8 C25 C24 SING N N 38 A1AG8 C42 C24 SING N N 39 A1AG8 O43 C42 DOUB N N 40 A1AG8 O44 C42 SING N N 41 A1AG8 C45 O44 SING N N 42 A1AG8 C24 C23 SING N N 43 A1AG8 O46 C23 SING N N 44 A1AG8 C23 C22 SING N N 45 A1AG8 O47 C22 SING N N 46 A1AG8 C03 O08 SING N N 47 A1AG8 C14 C19 SING Y N 48 A1AG8 C16 O27 SING N N 49 A1AG8 C22 C26 SING N N 50 A1AG8 C28 C33 SING Y N 51 A1AG8 C36 C41 SING Y N 52 A1AG8 C01 H012 SING N N 53 A1AG8 C01 H013 SING N N 54 A1AG8 C01 H011 SING N N 55 A1AG8 C03 H031 SING N N 56 A1AG8 C04 H041 SING N N 57 A1AG8 C06 H061 SING N N 58 A1AG8 C07 H071 SING N N 59 A1AG8 C07 H072 SING N N 60 A1AG8 C15 H151 SING N N 61 A1AG8 C19 H191 SING N N 62 A1AG8 C21 H212 SING N N 63 A1AG8 C21 H211 SING N N 64 A1AG8 C21 H213 SING N N 65 A1AG8 C23 H231 SING N N 66 A1AG8 C24 H241 SING N N 67 A1AG8 C25 H251 SING N N 68 A1AG8 C29 H291 SING N N 69 A1AG8 C30 H301 SING N N 70 A1AG8 C32 H321 SING N N 71 A1AG8 C33 H331 SING N N 72 A1AG8 C35 H353 SING N N 73 A1AG8 C35 H351 SING N N 74 A1AG8 C35 H352 SING N N 75 A1AG8 C37 H371 SING N N 76 A1AG8 C38 H381 SING N N 77 A1AG8 C39 H391 SING N N 78 A1AG8 C40 H401 SING N N 79 A1AG8 C41 H411 SING N N 80 A1AG8 C45 H452 SING N N 81 A1AG8 C45 H453 SING N N 82 A1AG8 C45 H451 SING N N 83 A1AG8 O46 H461 SING N N 84 A1AG8 O47 H471 SING N N 85 A1AG8 C09 H091 SING N N 86 A1AG8 C10 H102 SING N N 87 A1AG8 C10 H101 SING N N 88 A1AG8 O11 H111 SING N N 89 A1AG8 O12 H121 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AG8 SMILES ACDLabs 12.01 "COC1OCC(OC1Oc1cc(OC)c2c(OC3(c4ccc(OC)cc4)C(c4ccccc4)C(C(=O)OC)C(O)C23O)c1)C(O)CO" A1AG8 InChI InChI 1.06 "InChI=1S/C34H38O13/c1-40-20-12-10-19(11-13-20)34-27(18-8-6-5-7-9-18)26(30(38)42-3)29(37)33(34,39)28-23(41-2)14-21(15-24(28)47-34)45-32-31(43-4)44-17-25(46-32)22(36)16-35/h5-15,22,25-27,29,31-32,35-37,39H,16-17H2,1-4H3/t22-,25-,26-,27-,29-,31-,32-,33+,34+/m1/s1" A1AG8 InChIKey InChI 1.06 GVKXFVCXBFGBCD-QKDMMWSPSA-N A1AG8 SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1OC[C@@H](O[C@H]1Oc2cc(OC)c3c(O[C@]4([C@@H]([C@H]([C@@H](O)[C@@]34O)C(=O)OC)c5ccccc5)c6ccc(OC)cc6)c2)[C@H](O)CO" A1AG8 SMILES CACTVS 3.385 "CO[CH]1OC[CH](O[CH]1Oc2cc(OC)c3c(O[C]4([CH]([CH]([CH](O)[C]34O)C(=O)OC)c5ccccc5)c6ccc(OC)cc6)c2)[CH](O)CO" A1AG8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)[C@]23[C@@H]([C@H]([C@H]([C@]2(c4c(cc(cc4OC)O[C@H]5[C@@H](OC[C@@H](O5)[C@@H](CO)O)OC)O3)O)O)C(=O)OC)c6ccccc6" A1AG8 SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)C23C(C(C(C2(c4c(cc(cc4OC)OC5C(OCC(O5)C(CO)O)OC)O3)O)O)C(=O)OC)c6ccccc6" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AG8 "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (1R,2R,3S,3aR,8bS)-6-({(2S,3R,6R)-6-[(1R)-1,2-dihydroxyethyl]-3-methoxy-1,4-dioxan-2-yl}oxy)-1,8b-dihydroxy-8-methoxy-3a-(4-methoxyphenyl)-3-phenyl-2,3,3a,8b-tetrahydro-1H-benzo[b]cyclopenta[d]furan-2-carboxylate" A1AG8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "methyl (1~{R},2~{R},3~{S},3~{a}~{R},8~{b}~{S})-6-[[(2~{S},3~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-3-methoxy-1,4-dioxan-2-yl]oxy]-8-methoxy-3~{a}-(4-methoxyphenyl)-1,8~{b}-bis(oxidanyl)-3-phenyl-2,3-dihydro-1~{H}-cyclopenta[b][1]benzofuran-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AG8 "Create component" 2024-03-05 RCSB A1AG8 "Initial release" 2024-10-23 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id A1AG8 _pdbx_chem_comp_synonyms.name "methyl (1R,2R,3S,3aR,8bS)-6-({(2S,3R,6R)-6-[(1R)-1,2-dihydroxyethyl]-3-methoxy-1,4-dioxan-2-yl}oxy)-1,8b-dihydroxy-8-methoxy-3a-(4-methoxyphenyl)-3-phenyl-2,3,3a,8b-tetrahydro-1H-benzo[b]cyclopenta[d]furan-2-carboxylate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #