data_A1AGD # _chem_comp.id A1AGD _chem_comp.name "2,3-dimethyl-5-[(2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H46 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-12-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.664 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AU4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGD C1 C1 C 0 1 N N N N N N 79.077 98.833 124.557 7.227 1.549 1.281 C1 A1AGD 1 A1AGD C2 C2 C 0 1 N N N N N N 78.038 97.733 124.754 6.902 0.110 1.214 C2 A1AGD 2 A1AGD C11 C3 C 0 1 N N N N N N 72.586 97.283 123.661 2.290 -3.039 0.372 C11 A1AGD 3 A1AGD C14 C4 C 0 1 N N R N N N 69.338 96.086 124.663 -1.078 -1.193 0.097 C14 A1AGD 4 A1AGD C15 C5 C 0 1 N N N N N N 67.869 95.580 124.580 -0.687 0.130 0.759 C15 A1AGD 5 A1AGD C16 C6 C 0 1 N N N N N N 68.291 97.250 124.877 -2.487 -1.588 0.542 C16 A1AGD 6 A1AGD C17 C7 C 0 1 N N N N N N 67.852 97.387 126.379 -3.494 -0.561 0.020 C17 A1AGD 7 A1AGD C19 C8 C 0 1 N N R N N N 67.079 99.482 127.470 -5.910 0.070 -0.057 C19 A1AGD 8 A1AGD C23 C9 C 0 1 N N N N N N 63.911 97.982 129.123 -9.675 0.515 0.620 C23 A1AGD 9 A1AGD C24 C10 C 0 1 N N N N N N 63.421 98.283 130.347 -10.657 1.610 0.201 C24 A1AGD 10 A1AGD C25 C11 C 0 1 N N N N N N 62.033 97.920 129.743 -10.810 1.603 -1.322 C25 A1AGD 11 A1AGD C26 C12 C 0 1 N N N N N N 62.261 98.441 131.385 -12.017 1.351 0.851 C26 A1AGD 12 A1AGD C4 C13 C 0 1 N N N N N N 77.017 98.266 122.367 5.877 0.512 -0.964 C4 A1AGD 13 A1AGD C5 C14 C 0 1 N N N N N N 78.060 99.371 122.178 6.201 1.952 -0.897 C5 A1AGD 14 A1AGD C6 C15 C 0 1 N N N N N N 79.088 99.660 123.270 6.844 2.445 0.170 C6 A1AGD 15 A1AGD C8 C16 C 0 1 N N N N N N 74.530 96.882 123.991 4.524 -2.074 0.576 C8 A1AGD 16 A1AGD C9 C17 C 0 1 N N N N N N 73.754 96.413 123.001 3.656 -2.709 -0.172 C9 A1AGD 17 A1AGD C10 C18 C 0 1 N N N N N N 72.444 96.277 122.208 4.024 -3.110 -1.577 C10 A1AGD 18 A1AGD C12 C19 C 0 1 N N N N N N 71.744 96.439 124.696 1.300 -1.948 -0.042 C12 A1AGD 19 A1AGD C13 C20 C 0 1 N N N N N N 70.289 97.032 124.818 -0.087 -2.283 0.511 C13 A1AGD 20 A1AGD C18 C21 C 0 1 N N N N N N 68.078 98.851 126.825 -4.903 -0.957 0.465 C18 A1AGD 21 A1AGD C20 C22 C 0 1 N N N N N N 66.132 100.454 128.183 -5.940 0.023 -1.586 C20 A1AGD 22 A1AGD C21 C23 C 0 1 N N N N N N 65.879 98.445 127.550 -7.301 -0.255 0.491 C21 A1AGD 23 A1AGD C22 C24 C 0 1 N N N N N N 65.458 98.163 129.042 -8.284 0.840 0.072 C22 A1AGD 24 A1AGD C3 C25 C 0 1 N N N N N N 77.007 97.444 123.662 6.260 -0.383 0.146 C3 A1AGD 25 A1AGD C52 C26 C 0 1 N N N N N N 78.071 100.201 120.886 5.811 2.865 -2.030 C52 A1AGD 26 A1AGD C53 C27 C 0 1 N N N N N N 80.134 100.771 123.073 7.175 3.914 0.238 C53 A1AGD 27 A1AGD C7 C28 C 0 1 N N N N N N 75.972 96.319 123.880 5.929 -1.852 0.078 C7 A1AGD 28 A1AGD O1 O1 O 0 1 N N N N N N 76.235 98.061 121.512 5.294 0.065 -1.931 O1 A1AGD 29 A1AGD O2 O2 O 0 1 N N N N N N 79.870 99.048 125.398 7.805 1.997 2.250 O2 A1AGD 30 A1AGD H1 H1 H 0 1 N N N N N N 78.031 97.157 125.667 7.182 -0.545 2.026 H1 A1AGD 31 A1AGD H2 H2 H 0 1 N N N N N N 73.033 98.143 124.182 1.962 -3.998 -0.027 H2 A1AGD 32 A1AGD H3 H3 H 0 1 N N N N N N 71.917 97.643 122.866 2.336 -3.094 1.460 H3 A1AGD 33 A1AGD H4 H4 H 0 1 N N N N N N 69.349 95.891 125.745 -1.058 -1.077 -0.987 H4 A1AGD 34 A1AGD H5 H5 H 0 1 N N N N N N 67.864 94.497 124.386 -0.706 0.014 1.842 H5 A1AGD 35 A1AGD H6 H6 H 0 1 N N N N N N 67.357 95.784 125.532 0.317 0.412 0.442 H6 A1AGD 36 A1AGD H7 H7 H 0 1 N N N N N N 67.347 96.101 123.764 -1.392 0.907 0.464 H7 A1AGD 37 A1AGD H8 H8 H 0 1 N N N N N N 68.745 98.198 124.553 -2.732 -2.572 0.142 H8 A1AGD 38 A1AGD H9 H9 H 0 1 N N N N N N 67.401 97.042 124.266 -2.530 -1.618 1.630 H9 A1AGD 39 A1AGD H10 H10 H 0 1 N N N N N N 66.787 97.129 126.479 -3.250 0.423 0.420 H10 A1AGD 40 A1AGD H11 H11 H 0 1 N N N N N N 68.454 96.711 127.005 -3.452 -0.532 -1.069 H11 A1AGD 41 A1AGD H12 H12 H 0 1 N N N N N N 63.665 96.935 128.891 -9.633 0.461 1.707 H12 A1AGD 42 A1AGD H13 H13 H 0 1 N N N N N N 63.439 98.642 128.381 -10.007 -0.444 0.221 H13 A1AGD 43 A1AGD H14 H14 H 0 1 N N N N N N 63.559 97.237 130.660 -10.279 2.580 0.523 H14 A1AGD 44 A1AGD H15 H15 H 0 1 N N N N N N 61.254 98.046 130.510 -11.509 2.384 -1.620 H15 A1AGD 45 A1AGD H16 H16 H 0 1 N N N N N N 61.819 98.582 128.891 -9.840 1.788 -1.785 H16 A1AGD 46 A1AGD H17 H17 H 0 1 N N N N N N 62.044 96.875 129.401 -11.188 0.633 -1.645 H17 A1AGD 47 A1AGD H18 H18 H 0 1 N N N N N N 62.673 98.782 132.347 -11.909 1.356 1.935 H18 A1AGD 48 A1AGD H19 H19 H 0 1 N N N N N N 61.536 99.180 131.014 -12.717 2.132 0.552 H19 A1AGD 49 A1AGD H20 H20 H 0 1 N N N N N N 61.759 97.472 131.524 -12.396 0.381 0.528 H20 A1AGD 50 A1AGD H21 H21 H 0 1 N N N N N N 74.195 97.561 124.762 4.232 -1.709 1.550 H21 A1AGD 51 A1AGD H24 H24 H 0 1 N N N N N N 72.601 95.604 121.352 3.169 -3.588 -2.055 H24 A1AGD 52 A1AGD H25 H25 H 0 1 N N N N N N 71.661 95.863 122.861 4.310 -2.225 -2.145 H25 A1AGD 53 A1AGD H26 H26 H 0 1 N N N N N N 72.132 97.267 121.843 4.861 -3.808 -1.548 H26 A1AGD 54 A1AGD H27 H27 H 0 1 N N N N N N 71.685 95.396 124.353 1.628 -0.989 0.357 H27 A1AGD 55 A1AGD H28 H28 H 0 1 N N N N N N 72.235 96.474 125.680 1.254 -1.893 -1.130 H28 A1AGD 56 A1AGD H29 H29 H 0 1 N N N N N N 70.154 97.801 124.043 -0.042 -2.338 1.598 H29 A1AGD 57 A1AGD H30 H30 H 0 1 N N N N N N 70.175 97.489 125.812 -0.416 -3.243 0.112 H30 A1AGD 58 A1AGD H31 H31 H 0 1 N N N N N N 68.952 98.857 127.493 -5.148 -1.941 0.065 H31 A1AGD 59 A1AGD H32 H32 H 0 1 N N N N N N 65.213 99.924 128.475 -6.658 0.755 -1.958 H32 A1AGD 60 A1AGD H33 H33 H 0 1 N N N N N N 66.625 100.854 129.081 -4.950 0.255 -1.976 H33 A1AGD 61 A1AGD H34 H34 H 0 1 N N N N N N 65.878 101.282 127.505 -6.236 -0.973 -1.913 H34 A1AGD 62 A1AGD H35 H35 H 0 1 N N N N N N 65.015 98.855 127.006 -7.634 -1.214 0.092 H35 A1AGD 63 A1AGD H36 H36 H 0 1 N N N N N N 66.192 97.500 127.082 -7.260 -0.310 1.579 H36 A1AGD 64 A1AGD H37 H37 H 0 1 N N N N N N 65.761 99.010 129.674 -8.325 0.894 -1.016 H37 A1AGD 65 A1AGD H38 H38 H 0 1 N N N N N N 65.953 97.246 129.395 -7.951 1.798 0.471 H38 A1AGD 66 A1AGD H39 H39 H 0 1 N N N N N N 78.884 100.940 120.931 5.302 2.289 -2.803 H39 A1AGD 67 A1AGD H40 H40 H 0 1 N N N N N N 78.228 99.536 120.024 5.143 3.642 -1.657 H40 A1AGD 68 A1AGD H41 H41 H 0 1 N N N N N N 77.108 100.722 120.777 6.705 3.326 -2.450 H41 A1AGD 69 A1AGD H42 H42 H 0 1 N N N N N N 79.982 101.249 122.094 7.693 4.126 1.173 H42 A1AGD 70 A1AGD H43 H43 H 0 1 N N N N N N 80.025 101.523 123.869 7.817 4.181 -0.601 H43 A1AGD 71 A1AGD H44 H44 H 0 1 N N N N N N 81.143 100.336 123.116 6.255 4.496 0.192 H44 A1AGD 72 A1AGD H45 H45 H 0 1 N N N N N N 76.218 95.783 124.808 6.627 -2.411 0.701 H45 A1AGD 73 A1AGD H46 H46 H 0 1 N N N N N N 76.018 95.622 123.030 6.007 -2.195 -0.953 H46 A1AGD 74 A1AGD H47 H47 H 0 1 N N N N N N 67.463 99.129 128.438 -5.615 1.067 0.270 H47 A1AGD 75 A1AGD H22 H22 H 0 1 N N N N N N 68.303 99.436 125.921 -4.946 -0.987 1.554 H22 A1AGD 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGD C1 C2 SING N N 1 A1AGD C1 C6 SING N N 2 A1AGD C1 O2 DOUB N N 3 A1AGD C2 C3 DOUB N N 4 A1AGD C11 C9 SING N N 5 A1AGD C11 C12 SING N N 6 A1AGD C14 C15 SING N N 7 A1AGD C14 C16 SING N N 8 A1AGD C14 C13 SING N N 9 A1AGD C16 C17 SING N N 10 A1AGD C17 C18 SING N N 11 A1AGD C19 C18 SING N N 12 A1AGD C19 C20 SING N N 13 A1AGD C19 C21 SING N N 14 A1AGD C23 C24 SING N N 15 A1AGD C23 C22 SING N N 16 A1AGD C24 C25 SING N N 17 A1AGD C24 C26 SING N N 18 A1AGD C4 C5 SING N N 19 A1AGD C4 C3 SING N N 20 A1AGD C4 O1 DOUB N N 21 A1AGD C5 C6 DOUB N N 22 A1AGD C5 C52 SING N N 23 A1AGD C6 C53 SING N N 24 A1AGD C8 C9 DOUB N E 25 A1AGD C8 C7 SING N N 26 A1AGD C9 C10 SING N N 27 A1AGD C12 C13 SING N N 28 A1AGD C21 C22 SING N N 29 A1AGD C3 C7 SING N N 30 A1AGD C2 H1 SING N N 31 A1AGD C11 H2 SING N N 32 A1AGD C11 H3 SING N N 33 A1AGD C14 H4 SING N N 34 A1AGD C15 H5 SING N N 35 A1AGD C15 H6 SING N N 36 A1AGD C15 H7 SING N N 37 A1AGD C16 H8 SING N N 38 A1AGD C16 H9 SING N N 39 A1AGD C17 H10 SING N N 40 A1AGD C17 H11 SING N N 41 A1AGD C23 H12 SING N N 42 A1AGD C23 H13 SING N N 43 A1AGD C24 H14 SING N N 44 A1AGD C25 H15 SING N N 45 A1AGD C25 H16 SING N N 46 A1AGD C25 H17 SING N N 47 A1AGD C26 H18 SING N N 48 A1AGD C26 H19 SING N N 49 A1AGD C26 H20 SING N N 50 A1AGD C8 H21 SING N N 51 A1AGD C10 H24 SING N N 52 A1AGD C10 H25 SING N N 53 A1AGD C10 H26 SING N N 54 A1AGD C12 H27 SING N N 55 A1AGD C12 H28 SING N N 56 A1AGD C13 H29 SING N N 57 A1AGD C13 H30 SING N N 58 A1AGD C18 H31 SING N N 59 A1AGD C20 H32 SING N N 60 A1AGD C20 H33 SING N N 61 A1AGD C20 H34 SING N N 62 A1AGD C21 H35 SING N N 63 A1AGD C21 H36 SING N N 64 A1AGD C22 H37 SING N N 65 A1AGD C22 H38 SING N N 66 A1AGD C52 H39 SING N N 67 A1AGD C52 H40 SING N N 68 A1AGD C52 H41 SING N N 69 A1AGD C53 H42 SING N N 70 A1AGD C53 H43 SING N N 71 A1AGD C53 H44 SING N N 72 A1AGD C7 H45 SING N N 73 A1AGD C7 H46 SING N N 74 A1AGD C19 H47 SING N N 75 A1AGD C18 H22 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGD SMILES ACDLabs 14.52 "CC=1C(=O)C=C(C\C=C(/C)CCCC(C)CCCC(C)CCCC(C)C)C(=O)C=1C" A1AGD InChI InChI 1.06 "InChI=1S/C28H46O2/c1-20(2)11-8-12-21(3)13-9-14-22(4)15-10-16-23(5)17-18-26-19-27(29)24(6)25(7)28(26)30/h17,19-22H,8-16,18H2,1-7H3/b23-17+" A1AGD InChIKey InChI 1.06 ZPVFWTSVFVOTQH-HAVVHWLPSA-N A1AGD SMILES_CANONICAL CACTVS 3.385 "CC(C)CCC[C@@H](C)CCC[C@@H](C)CCC/C(C)=C/CC1=CC(=O)C(=C(C)C1=O)C" A1AGD SMILES CACTVS 3.385 "CC(C)CCC[CH](C)CCC[CH](C)CCCC(C)=CCC1=CC(=O)C(=C(C)C1=O)C" A1AGD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C(=CC1=O)C/C=C(\C)/CCCC(C)CCCC(C)CCCC(C)C)C" A1AGD SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)C(=CC1=O)CC=C(C)CCCC(C)CCCC(C)CCCC(C)C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGD "SYSTEMATIC NAME" ACDLabs 14.52 "2,3-dimethyl-5-[(2E,7R,11R)-3,7,11,15-tetramethylhexadec-2-en-1-yl]cyclohexa-2,5-diene-1,4-dione" A1AGD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,3-dimethyl-5-[(~{E})-3,7,11,15-tetramethylhexadec-2-enyl]cyclohexa-2,5-diene-1,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGD "Create component" 2024-02-29 RCSB A1AGD "Initial release" 2024-12-25 RCSB #