data_A1AGF # _chem_comp.id A1AGF _chem_comp.name "(1S,2S)-2-{[N-({[(2S)-1-benzyl-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H38 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.666 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ASV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGF C10 C1 C 0 1 N N S N N N 12.185 22.083 26.925 0.881 1.112 1.019 C10 A1AGF 1 A1AGF C33 C2 C 0 1 Y N N N N N 13.259 30.312 26.709 -9.382 0.460 -1.385 C33 A1AGF 2 A1AGF C11 C3 C 0 1 N N N N N N 13.335 21.897 27.934 1.258 1.746 2.360 C11 A1AGF 3 A1AGF C17 C4 C 0 1 N N S N N N 9.081 19.828 27.570 4.017 -0.605 -0.341 C17 A1AGF 4 A1AGF C22 C5 C 0 1 N N N N N N 5.738 22.634 25.991 4.877 2.411 -3.540 C22 A1AGF 5 A1AGF C23 C6 C 0 1 N N N N N N 6.822 21.905 26.798 5.000 0.890 -3.779 C23 A1AGF 6 A1AGF C20 C7 C 0 1 N N N N N N 6.649 20.893 24.617 3.126 1.441 -2.361 C20 A1AGF 7 A1AGF C31 C8 C 0 1 Y N N N N N 11.942 29.318 24.932 -7.194 -0.510 -1.330 C31 A1AGF 8 A1AGF C25 C9 C 0 1 N N S N N N 9.359 18.440 28.175 4.867 -1.084 0.837 C25 A1AGF 9 A1AGF C12 C10 C 0 1 N N N N N N 14.701 22.322 27.434 2.571 2.517 2.208 C12 A1AGF 10 A1AGF C02 C11 C 0 1 N N N N N N 9.290 28.245 23.079 -4.967 -1.541 0.829 C02 A1AGF 11 A1AGF C03 C12 C 0 1 N N N N N N 7.882 27.852 23.316 -4.616 -1.232 2.267 C03 A1AGF 12 A1AGF C04 C13 C 0 1 N N N N N N 7.815 27.417 24.751 -5.182 0.189 2.499 C04 A1AGF 13 A1AGF C05 C14 C 0 1 N N S N N N 9.285 27.150 25.183 -5.203 0.758 1.063 C05 A1AGF 14 A1AGF C06 C15 C 0 1 N N N N N N 9.557 25.626 25.092 -3.914 1.533 0.783 C06 A1AGF 15 A1AGF C08 C16 C 0 1 N N N N N N 10.997 23.921 25.790 -1.549 1.226 0.877 C08 A1AGF 16 A1AGF C13 C17 C 0 1 N N N N N N 15.159 21.490 26.260 2.358 3.708 1.271 C13 A1AGF 17 A1AGF C14 C18 C 0 1 N N N N N N 15.774 22.186 28.531 3.028 3.021 3.578 C14 A1AGF 18 A1AGF C15 C19 C 0 1 N N N N N N 10.904 21.540 27.578 1.897 0.060 0.658 C15 A1AGF 19 A1AGF C18 C20 C 0 1 N N N N N N 8.031 19.706 26.396 4.927 -0.015 -1.421 C18 A1AGF 20 A1AGF C19 C21 C 0 1 N N S N N N 7.613 21.054 25.777 4.097 0.320 -2.661 C19 A1AGF 21 A1AGF C30 C22 C 0 1 N N N N N N 11.515 28.067 24.198 -5.699 -0.353 -1.227 C30 A1AGF 22 A1AGF C32 C23 C 0 1 Y N N N N N 12.830 29.200 25.994 -8.010 0.605 -1.291 C32 A1AGF 23 A1AGF C34 C24 C 0 1 Y N N N N N 12.788 31.576 26.386 -9.937 -0.799 -1.513 C34 A1AGF 24 A1AGF C35 C25 C 0 1 Y N N N N N 11.885 31.708 25.330 -9.121 -1.914 -1.552 C35 A1AGF 25 A1AGF C36 C26 C 0 1 Y N N N N N 11.467 30.588 24.612 -7.749 -1.769 -1.463 C36 A1AGF 26 A1AGF N09 N1 N 0 1 N N N N N N 11.984 23.512 26.622 -0.444 0.496 1.127 N09 A1AGF 27 A1AGF N16 N2 N 0 1 N N N N N N 10.314 20.406 27.036 3.078 0.421 0.119 N16 A1AGF 28 A1AGF N21 N3 N 0 1 N N N N N N 5.598 21.808 24.766 3.585 2.598 -2.868 N21 A1AGF 29 A1AGF N29 N4 N 0 1 N N N N N N 10.084 27.816 24.162 -5.297 -0.411 0.180 N29 A1AGF 30 A1AGF O01 O1 O 0 1 N N N N N N 9.704 28.819 22.093 -4.949 -2.647 0.332 O01 A1AGF 31 A1AGF O07 O2 O 0 1 N N N N N N 10.830 25.259 25.581 -2.769 0.689 1.073 O07 A1AGF 32 A1AGF O24 O3 O 0 1 N N N N N N 6.729 20.135 23.690 2.086 1.315 -1.751 O24 A1AGF 33 A1AGF O26 O4 O 0 1 N N N N N N 8.097 17.950 28.573 4.012 -1.515 1.897 O26 A1AGF 34 A1AGF O27 O5 O 0 1 N N N N N N 10.420 22.120 28.538 1.651 -1.112 0.851 O27 A1AGF 35 A1AGF O28 O6 O 0 1 N N N N N N 10.249 23.127 25.225 -1.445 2.368 0.474 O28 A1AGF 36 A1AGF H1 H1 H 0 1 N N N N N N 12.402 21.519 26.006 0.862 1.881 0.247 H1 A1AGF 37 A1AGF H2 H2 H 0 1 N N N N N N 13.962 30.191 27.520 -10.020 1.331 -1.355 H2 A1AGF 38 A1AGF H3 H3 H 0 1 N N N N N N 13.101 22.489 28.831 0.470 2.431 2.673 H3 A1AGF 39 A1AGF H4 H4 H 0 1 N N N N N N 13.386 20.831 28.201 1.380 0.965 3.110 H4 A1AGF 40 A1AGF H5 H5 H 0 1 N N N N N N 8.662 20.483 28.349 3.462 -1.447 -0.754 H5 A1AGF 41 A1AGF H6 H6 H 0 1 N N N N N N 6.056 23.657 25.741 5.688 2.759 -2.900 H6 A1AGF 42 A1AGF H7 H7 H 0 1 N N N N N N 4.791 22.671 26.550 4.891 2.945 -4.490 H7 A1AGF 43 A1AGF H8 H8 H 0 1 N N N N N N 6.362 21.258 27.560 4.620 0.618 -4.764 H8 A1AGF 44 A1AGF H9 H9 H 0 1 N N N N N N 7.488 22.631 27.287 6.031 0.558 -3.656 H9 A1AGF 45 A1AGF H10 H10 H 0 1 N N N N N N 9.952 18.615 29.085 5.496 -0.265 1.188 H10 A1AGF 46 A1AGF S1 S1 S 0 1 N Y N N N N 9.835 17.788 27.472 5.916 -2.465 0.305 S1 A1AGF 47 A1AGF H12 H12 H 0 1 N N N N N N 14.652 23.376 27.124 3.333 1.858 1.790 H12 A1AGF 48 A1AGF H13 H13 H 0 1 N N N N N N 7.211 28.707 23.143 -5.092 -1.946 2.939 H13 A1AGF 49 A1AGF H14 H14 H 0 1 N N N N N N 7.598 27.023 22.651 -3.535 -1.238 2.406 H14 A1AGF 50 A1AGF H15 H15 H 0 1 N N N N N N 7.372 28.210 25.371 -6.189 0.144 2.916 H15 A1AGF 51 A1AGF H16 H16 H 0 1 N N N N N N 7.216 26.500 24.845 -4.522 0.772 3.141 H16 A1AGF 52 A1AGF H17 H17 H 0 1 N N N N N N 9.480 27.533 26.195 -6.069 1.405 0.926 H17 A1AGF 53 A1AGF H18 H18 H 0 1 N N N N N N 8.791 25.098 25.679 -3.890 1.831 -0.266 H18 A1AGF 54 A1AGF H19 H19 H 0 1 N N N N N N 9.486 25.320 24.038 -3.880 2.421 1.413 H19 A1AGF 55 A1AGF H20 H20 H 0 1 N N N N N N 16.151 21.833 25.932 3.308 4.217 1.110 H20 A1AGF 56 A1AGF H21 H21 H 0 1 N N N N N N 15.217 20.433 26.560 1.969 3.354 0.316 H21 A1AGF 57 A1AGF H22 H22 H 0 1 N N N N N N 14.442 21.597 25.433 1.646 4.400 1.720 H22 A1AGF 58 A1AGF H23 H23 H 0 1 N N N N N N 15.479 22.779 29.409 3.180 2.173 4.245 H23 A1AGF 59 A1AGF H24 H24 H 0 1 N N N N N N 15.872 21.129 28.819 3.964 3.570 3.470 H24 A1AGF 60 A1AGF H25 H25 H 0 1 N N N N N N 16.738 22.552 28.148 2.267 3.680 3.995 H25 A1AGF 61 A1AGF H26 H26 H 0 1 N N N N N N 7.130 19.213 26.790 5.399 0.892 -1.043 H26 A1AGF 62 A1AGF H27 H27 H 0 1 N N N N N N 8.472 19.084 25.603 5.696 -0.742 -1.684 H27 A1AGF 63 A1AGF H28 H28 H 0 1 N N N N N N 8.507 21.605 25.450 3.563 -0.563 -3.012 H28 A1AGF 64 A1AGF H29 H29 H 0 1 N N N N N N 11.997 27.207 24.686 -5.210 -1.157 -1.778 H29 A1AGF 65 A1AGF H30 H30 H 0 1 N N N N N N 11.871 28.146 23.160 -5.405 0.608 -1.650 H30 A1AGF 66 A1AGF H31 H31 H 0 1 N N N N N N 13.195 28.222 26.270 -7.577 1.588 -1.187 H31 A1AGF 67 A1AGF H32 H32 H 0 1 N N N N N N 13.114 32.443 26.942 -11.009 -0.912 -1.583 H32 A1AGF 68 A1AGF H33 H33 H 0 1 N N N N N N 11.507 32.685 25.067 -9.555 -2.898 -1.651 H33 A1AGF 69 A1AGF H34 H34 H 0 1 N N N N N N 10.767 30.707 23.798 -7.111 -2.640 -1.494 H34 A1AGF 70 A1AGF H35 H35 H 0 1 N N N N N N 12.588 24.192 27.039 -0.526 -0.438 1.378 H35 A1AGF 71 A1AGF H36 H36 H 0 1 N N N N N N 10.749 19.967 26.250 3.307 1.360 0.036 H36 A1AGF 72 A1AGF H37 H37 H 0 1 N N N N N N 4.840 21.895 24.120 3.122 3.448 -2.800 H37 A1AGF 73 A1AGF H38 H38 H 0 1 N N N N N N 8.199 17.088 28.958 3.422 -0.826 2.232 H38 A1AGF 74 A1AGF O2 O7 O 0 1 N Y N N N N ? ? ? 6.921 -1.834 -0.648 O2 A1AGF 75 A1AGF O3 O8 O 0 1 N Y N N N N ? ? ? 6.707 -2.936 1.387 O3 A1AGF 76 A1AGF O1 O9 O 0 1 N Y N N N N ? ? ? 5.178 -3.366 -0.510 O1 A1AGF 77 A1AGF H11 H11 H 0 1 N N N N N N ? ? ? 7.557 -2.460 -1.020 H11 A1AGF 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGF O01 C02 DOUB N N 1 A1AGF C02 C03 SING N N 2 A1AGF C02 N29 SING N N 3 A1AGF C03 C04 SING N N 4 A1AGF O24 C20 DOUB N N 5 A1AGF N29 C30 SING N N 6 A1AGF N29 C05 SING N N 7 A1AGF C30 C31 SING N N 8 A1AGF C36 C31 DOUB Y N 9 A1AGF C36 C35 SING Y N 10 A1AGF C20 N21 SING N N 11 A1AGF C20 C19 SING N N 12 A1AGF C04 C05 SING N N 13 A1AGF N21 C22 SING N N 14 A1AGF C31 C32 SING Y N 15 A1AGF C06 C05 SING N N 16 A1AGF C06 O07 SING N N 17 A1AGF O28 C08 DOUB N N 18 A1AGF C35 C34 DOUB Y N 19 A1AGF O07 C08 SING N N 20 A1AGF C19 C18 SING N N 21 A1AGF C19 C23 SING N N 22 A1AGF C08 N09 SING N N 23 A1AGF C22 C23 SING N N 24 A1AGF C32 C33 DOUB Y N 25 A1AGF C13 C12 SING N N 26 A1AGF C34 C33 SING Y N 27 A1AGF C18 C17 SING N N 28 A1AGF N09 C10 SING N N 29 A1AGF C10 C15 SING N N 30 A1AGF C10 C11 SING N N 31 A1AGF N16 C17 SING N N 32 A1AGF N16 C15 SING N N 33 A1AGF C12 C11 SING N N 34 A1AGF C12 C14 SING N N 35 A1AGF C17 C25 SING N N 36 A1AGF C15 O27 DOUB N N 37 A1AGF C25 O26 SING N N 38 A1AGF C10 H1 SING N N 39 A1AGF C33 H2 SING N N 40 A1AGF C11 H3 SING N N 41 A1AGF C11 H4 SING N N 42 A1AGF C17 H5 SING N N 43 A1AGF C22 H6 SING N N 44 A1AGF C22 H7 SING N N 45 A1AGF C23 H8 SING N N 46 A1AGF C23 H9 SING N N 47 A1AGF C25 H10 SING N N 48 A1AGF C25 S1 SING N N 49 A1AGF C12 H12 SING N N 50 A1AGF C03 H13 SING N N 51 A1AGF C03 H14 SING N N 52 A1AGF C04 H15 SING N N 53 A1AGF C04 H16 SING N N 54 A1AGF C05 H17 SING N N 55 A1AGF C06 H18 SING N N 56 A1AGF C06 H19 SING N N 57 A1AGF C13 H20 SING N N 58 A1AGF C13 H21 SING N N 59 A1AGF C13 H22 SING N N 60 A1AGF C14 H23 SING N N 61 A1AGF C14 H24 SING N N 62 A1AGF C14 H25 SING N N 63 A1AGF C18 H26 SING N N 64 A1AGF C18 H27 SING N N 65 A1AGF C19 H28 SING N N 66 A1AGF C30 H29 SING N N 67 A1AGF C30 H30 SING N N 68 A1AGF C32 H31 SING N N 69 A1AGF C34 H32 SING N N 70 A1AGF C35 H33 SING N N 71 A1AGF C36 H34 SING N N 72 A1AGF N09 H35 SING N N 73 A1AGF N16 H36 SING N N 74 A1AGF N21 H37 SING N N 75 A1AGF O26 H38 SING N N 76 A1AGF S1 O2 SING N N 77 A1AGF S1 O3 DOUB N N 78 A1AGF S1 O1 DOUB N N 79 A1AGF O2 H11 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGF SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1Cc1ccccc1)C(O)S(=O)(=O)O" A1AGF InChI InChI 1.06 "InChI=1S/C26H38N4O9S/c1-16(2)12-20(24(33)28-21(25(34)40(36,37)38)13-18-10-11-27-23(18)32)29-26(35)39-15-19-8-9-22(31)30(19)14-17-6-4-3-5-7-17/h3-7,16,18-21,25,34H,8-15H2,1-2H3,(H,27,32)(H,28,33)(H,29,35)(H,36,37,38)/t18-,19-,20-,21-,25-/m0/s1" A1AGF InChIKey InChI 1.06 AUDFKQBBLRSAHE-SQDATOHTSA-N A1AGF SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1Cc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" A1AGF SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1Cc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2Cc3ccccc3" A1AGF SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2Cc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGF "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-{[N-({[(2S)-1-benzyl-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[(2~{S})-5-oxidanylidene-1-(phenylmethyl)pyrrolidin-2-yl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGF "Create component" 2024-02-29 RCSB A1AGF "Initial release" 2024-07-10 RCSB A1AGF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #