data_A1AGH # _chem_comp.id A1AGH _chem_comp.name "(1R,2S)-1-hydroxy-2-{[N-({[(2S)-5-oxo-1-(2-phenylethyl)pyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H40 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 596.693 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ASZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGH C1 C1 C 0 1 N N N N N N 10.751 23.970 25.833 -1.144 1.871 -0.863 C1 A1AGH 1 A1AGH C2 C2 C 0 1 N N N N N N 9.370 25.726 25.142 -3.441 2.516 -0.927 C2 A1AGH 2 A1AGH C3 C3 C 0 1 N N S N N N 9.151 27.232 25.135 -4.568 2.912 0.030 C3 A1AGH 3 A1AGH C4 C4 C 0 1 N N N N N N 11.619 27.765 24.699 -5.044 0.401 0.471 C4 A1AGH 4 A1AGH C5 C5 C 0 1 N N N N N N 12.001 28.307 26.083 -6.498 0.142 0.072 C5 A1AGH 5 A1AGH C6 C6 C 0 1 Y N N N N N 11.715 29.782 26.158 -6.647 -1.287 -0.385 C6 A1AGH 6 A1AGH C10 C7 C 0 1 Y N N N N N 10.165 31.608 26.472 -7.099 -3.586 0.109 C10 A1AGH 7 A1AGH C11 C8 C 0 1 Y N N N N N 10.432 30.248 26.431 -6.963 -2.275 0.529 C11 A1AGH 8 A1AGH C12 C9 C 0 1 N N N N N N 9.741 28.849 23.511 -5.056 2.200 2.185 C12 A1AGH 9 A1AGH C13 C10 C 0 1 N N N N N N 8.253 28.945 23.699 -4.824 3.694 2.282 C13 A1AGH 10 A1AGH C14 C11 C 0 1 N N N N N N 7.897 27.620 24.335 -4.102 4.052 0.962 C14 A1AGH 11 A1AGH C15 C12 C 0 1 N N S N N N 11.905 22.202 27.072 1.164 1.095 -0.963 C15 A1AGH 12 A1AGH C16 C13 C 0 1 N N N N N N 13.037 22.013 28.077 1.910 2.270 -1.599 C16 A1AGH 13 A1AGH C17 C14 C 0 1 N N N N N N 14.396 22.501 27.604 3.056 1.740 -2.462 C17 A1AGH 14 A1AGH C18 C15 C 0 1 N N N N N N 15.405 22.448 28.760 2.482 0.970 -3.654 C18 A1AGH 15 A1AGH C19 C16 C 0 1 N N N N N N 14.888 21.706 26.417 3.897 2.912 -2.970 C19 A1AGH 16 A1AGH C20 C17 C 0 1 N N N N N N 10.596 21.686 27.662 2.087 0.363 -0.024 C20 A1AGH 17 A1AGH C21 C18 C 0 1 N N S N N N 8.884 19.933 27.626 3.793 -1.324 0.407 C21 A1AGH 18 A1AGH C22 C19 C 0 1 N N N N N N 7.898 19.822 26.451 4.647 -0.396 1.275 C22 A1AGH 19 A1AGH C23 C20 C 0 1 N N S N N N 7.464 21.159 25.842 5.621 0.379 0.386 C23 A1AGH 20 A1AGH C24 C21 C 0 1 N N N N N N 6.541 21.033 24.635 6.492 1.289 1.223 C24 A1AGH 21 A1AGH C25 C22 C 0 1 N N N N N N 5.730 22.838 25.888 7.920 0.251 -0.286 C25 A1AGH 22 A1AGH C26 C23 C 0 1 N N N N N N 6.679 22.059 26.804 6.622 -0.587 -0.290 C26 A1AGH 23 A1AGH C27 C24 C 0 1 N N R N N N 9.160 18.598 28.269 2.876 -2.159 1.303 C27 A1AGH 24 A1AGH C7 C25 C 0 1 Y N N N N N 12.715 30.714 25.903 -6.472 -1.608 -1.718 C7 A1AGH 25 A1AGH C8 C26 C 0 1 Y N N N N N 12.445 32.075 25.954 -6.608 -2.918 -2.137 C8 A1AGH 26 A1AGH C9 C27 C 0 1 Y N N N N N 11.172 32.519 26.237 -6.918 -3.908 -1.223 C9 A1AGH 27 A1AGH N1 N1 N 0 1 N N N N N N 10.207 27.967 24.427 -4.900 1.790 0.915 N1 A1AGH 28 A1AGH N2 N2 N 0 1 N N N N N N 11.699 23.590 26.711 0.007 1.597 -0.217 N2 A1AGH 29 A1AGH N3 N3 N 0 1 N N N N N N 10.166 20.501 27.217 2.980 -0.522 -0.511 N3 A1AGH 30 A1AGH N4 N4 N 0 1 N N N N N N 5.597 21.963 24.732 7.774 1.194 0.829 N4 A1AGH 31 A1AGH O1 O1 O 0 1 N N N N N N 10.080 23.210 25.158 -1.197 1.783 -2.073 O1 A1AGH 32 A1AGH O2 O2 O 0 1 N N N N N N 10.540 25.302 25.885 -2.236 2.236 -0.166 O2 A1AGH 33 A1AGH O3 O3 O 0 1 N N N N N N 10.412 29.510 22.717 -5.338 1.479 3.119 O3 A1AGH 34 A1AGH O4 O4 O 0 1 N N N N N N 6.658 20.209 23.712 6.092 2.002 2.119 O4 A1AGH 35 A1AGH O5 O5 O 0 1 N N N N N N 7.933 18.050 28.737 3.668 -2.918 2.219 O5 A1AGH 36 A1AGH O6 O6 O 0 1 N N N N N N 9.988 22.362 28.497 2.028 0.569 1.169 O6 A1AGH 37 A1AGH H1 H1 H 0 1 N N N N N N 8.485 25.250 25.590 -3.733 1.627 -1.484 H1 A1AGH 38 A1AGH H2 H2 H 0 1 N N N N N N 9.481 25.388 24.101 -3.250 3.334 -1.622 H2 A1AGH 39 A1AGH H3 H3 H 0 1 N N N N N N 9.055 27.597 26.168 -5.448 3.222 -0.534 H3 A1AGH 40 A1AGH H4 H4 H 0 1 N N N N N N 11.841 26.688 24.662 -4.765 -0.271 1.282 H4 A1AGH 41 A1AGH H5 H5 H 0 1 N N N N N N 12.210 28.288 23.933 -4.395 0.225 -0.387 H5 A1AGH 42 A1AGH H6 H6 H 0 1 N N N N N N 11.415 27.783 26.853 -7.148 0.318 0.930 H6 A1AGH 43 A1AGH H7 H7 H 0 1 N N N N N N 13.073 28.135 26.258 -6.778 0.813 -0.739 H7 A1AGH 44 A1AGH H8 H8 H 0 1 N N N N N N 9.165 31.954 26.689 -7.345 -4.358 0.823 H8 A1AGH 45 A1AGH H9 H9 H 0 1 N N N N N N 9.635 29.542 26.613 -7.103 -2.024 1.569 H9 A1AGH 46 A1AGH H10 H10 H 0 1 N N N N N N 7.993 29.783 24.362 -5.774 4.224 2.352 H10 A1AGH 47 A1AGH H11 H11 H 0 1 N N N N N N 7.741 29.069 22.733 -4.192 3.928 3.139 H11 A1AGH 48 A1AGH H12 H12 H 0 1 N N N N N N 7.028 27.729 25.001 -3.019 4.031 1.092 H12 A1AGH 49 A1AGH H13 H13 H 0 1 N N N N N N 7.677 26.865 23.566 -4.430 5.021 0.588 H13 A1AGH 50 A1AGH H14 H14 H 0 1 N N N N N N 12.137 21.617 26.170 0.825 0.414 -1.744 H14 A1AGH 51 A1AGH H15 H15 H 0 1 N N N N N N 12.776 22.562 28.994 1.222 2.844 -2.220 H15 A1AGH 52 A1AGH H16 H16 H 0 1 N N N N N N 13.118 20.940 28.303 2.312 2.912 -0.815 H16 A1AGH 53 A1AGH H17 H17 H 0 1 N N N N N N 14.292 23.551 27.294 3.681 1.074 -1.867 H17 A1AGH 54 A1AGH H18 H18 H 0 1 N N N N N N 15.022 23.034 29.609 1.910 1.651 -4.285 H18 A1AGH 55 A1AGH H19 H19 H 0 1 N N N N N N 15.551 21.403 29.072 3.298 0.536 -4.233 H19 A1AGH 56 A1AGH H20 H20 H 0 1 N N N N N N 16.365 22.869 28.428 1.830 0.175 -3.293 H20 A1AGH 57 A1AGH H21 H21 H 0 1 N N N N N N 15.871 22.086 26.103 4.306 3.461 -2.121 H21 A1AGH 58 A1AGH H22 H22 H 0 1 N N N N N N 14.977 20.646 26.697 4.714 2.534 -3.585 H22 A1AGH 59 A1AGH H23 H23 H 0 1 N N N N N N 14.174 21.807 25.587 3.271 3.578 -3.565 H23 A1AGH 60 A1AGH H24 H24 H 0 1 N N N N N N 8.432 20.591 28.383 4.442 -1.986 -0.165 H24 A1AGH 61 A1AGH H25 H25 H 0 1 N N N N N N 6.997 19.302 26.809 4.000 0.305 1.802 H25 A1AGH 62 A1AGH H26 H26 H 0 1 N N N N N N 8.376 19.226 25.660 5.207 -0.989 1.997 H26 A1AGH 63 A1AGH H27 H27 H 0 1 N N N N N N 8.368 21.701 25.528 5.078 0.952 -0.365 H27 A1AGH 64 A1AGH H28 H28 H 0 1 N N N N N N 6.164 23.807 25.602 8.784 -0.393 -0.124 H28 A1AGH 65 A1AGH H29 H29 H 0 1 N N N N N N 4.757 23.001 26.374 8.023 0.791 -1.227 H29 A1AGH 66 A1AGH H30 H30 H 0 1 N N N N N N 6.115 21.457 27.531 6.743 -1.497 0.297 H30 A1AGH 67 A1AGH H31 H31 H 0 1 N N N N N N 7.354 22.742 27.340 6.312 -0.820 -1.309 H31 A1AGH 68 A1AGH S1 S1 S 0 1 N Y N N N N 9.851 18.710 29.079 1.890 -3.285 0.278 S1 A1AGH 69 A1AGH H33 H33 H 0 1 N N N N N N 9.529 17.939 27.469 2.211 -1.498 1.860 H33 A1AGH 70 A1AGH H34 H34 H 0 1 N N N N N N 13.712 30.376 25.663 -6.229 -0.835 -2.432 H34 A1AGH 71 A1AGH H35 H35 H 0 1 N N N N N N 13.235 32.788 25.771 -6.472 -3.169 -3.178 H35 A1AGH 72 A1AGH H36 H36 H 0 1 N N N N N N 10.964 33.578 26.275 -7.024 -4.931 -1.550 H36 A1AGH 73 A1AGH H37 H37 H 0 1 N N N N N N 12.280 24.289 27.128 0.069 1.732 0.742 H37 A1AGH 74 A1AGH H38 H38 H 0 1 N N N N N N 10.742 19.986 26.582 3.084 -0.628 -1.470 H38 A1AGH 75 A1AGH H39 H39 H 0 1 N N N N N N 4.857 22.054 24.066 8.507 1.685 1.231 H39 A1AGH 76 A1AGH H40 H40 H 0 1 N N N N N N 8.097 17.208 29.144 4.221 -2.380 2.800 H40 A1AGH 77 A1AGH O7 O7 O 0 1 N Y N N N N ? ? ? 0.905 -3.941 1.064 O7 A1AGH 78 A1AGH O8 O8 O 0 1 N Y N N N N ? ? ? 1.091 -2.365 -0.635 O8 A1AGH 79 A1AGH O9 O9 O 0 1 N Y N N N N ? ? ? 2.728 -4.016 -0.607 O9 A1AGH 80 A1AGH H32 H32 H 0 1 N N N N N N ? ? ? 0.508 -2.832 -1.250 H32 A1AGH 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGH O3 C12 DOUB N N 1 A1AGH C12 C13 SING N N 2 A1AGH C12 N1 SING N N 3 A1AGH C13 C14 SING N N 4 A1AGH O4 C24 DOUB N N 5 A1AGH C14 C3 SING N N 6 A1AGH N1 C4 SING N N 7 A1AGH N1 C3 SING N N 8 A1AGH C24 N4 SING N N 9 A1AGH C24 C23 SING N N 10 A1AGH C4 C5 SING N N 11 A1AGH N4 C25 SING N N 12 A1AGH C3 C2 SING N N 13 A1AGH C2 O2 SING N N 14 A1AGH O1 C1 DOUB N N 15 A1AGH C1 O2 SING N N 16 A1AGH C1 N2 SING N N 17 A1AGH C23 C22 SING N N 18 A1AGH C23 C26 SING N N 19 A1AGH C25 C26 SING N N 20 A1AGH C7 C8 DOUB Y N 21 A1AGH C7 C6 SING Y N 22 A1AGH C8 C9 SING Y N 23 A1AGH C5 C6 SING N N 24 A1AGH C6 C11 DOUB Y N 25 A1AGH C9 C10 DOUB Y N 26 A1AGH C19 C17 SING N N 27 A1AGH C11 C10 SING Y N 28 A1AGH C22 C21 SING N N 29 A1AGH N2 C15 SING N N 30 A1AGH C15 C20 SING N N 31 A1AGH C15 C16 SING N N 32 A1AGH N3 C21 SING N N 33 A1AGH N3 C20 SING N N 34 A1AGH C17 C16 SING N N 35 A1AGH C17 C18 SING N N 36 A1AGH C21 C27 SING N N 37 A1AGH C20 O6 DOUB N N 38 A1AGH C27 O5 SING N N 39 A1AGH C2 H1 SING N N 40 A1AGH C2 H2 SING N N 41 A1AGH C3 H3 SING N N 42 A1AGH C4 H4 SING N N 43 A1AGH C4 H5 SING N N 44 A1AGH C5 H6 SING N N 45 A1AGH C5 H7 SING N N 46 A1AGH C10 H8 SING N N 47 A1AGH C11 H9 SING N N 48 A1AGH C13 H10 SING N N 49 A1AGH C13 H11 SING N N 50 A1AGH C14 H12 SING N N 51 A1AGH C14 H13 SING N N 52 A1AGH C15 H14 SING N N 53 A1AGH C16 H15 SING N N 54 A1AGH C16 H16 SING N N 55 A1AGH C17 H17 SING N N 56 A1AGH C18 H18 SING N N 57 A1AGH C18 H19 SING N N 58 A1AGH C18 H20 SING N N 59 A1AGH C19 H21 SING N N 60 A1AGH C19 H22 SING N N 61 A1AGH C19 H23 SING N N 62 A1AGH C21 H24 SING N N 63 A1AGH C22 H25 SING N N 64 A1AGH C22 H26 SING N N 65 A1AGH C23 H27 SING N N 66 A1AGH C25 H28 SING N N 67 A1AGH C25 H29 SING N N 68 A1AGH C26 H30 SING N N 69 A1AGH C26 H31 SING N N 70 A1AGH C27 S1 SING N N 71 A1AGH C27 H33 SING N N 72 A1AGH C7 H34 SING N N 73 A1AGH C8 H35 SING N N 74 A1AGH C9 H36 SING N N 75 A1AGH N2 H37 SING N N 76 A1AGH N3 H38 SING N N 77 A1AGH N4 H39 SING N N 78 A1AGH O5 H40 SING N N 79 A1AGH S1 O7 DOUB N N 80 A1AGH S1 O8 SING N N 81 A1AGH S1 O9 DOUB N N 82 A1AGH O8 H32 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGH SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CCc1ccccc1)C(O)S(=O)(=O)O" A1AGH InChI InChI 1.06 "InChI=1S/C27H40N4O9S/c1-17(2)14-21(25(34)29-22(26(35)41(37,38)39)15-19-10-12-28-24(19)33)30-27(36)40-16-20-8-9-23(32)31(20)13-11-18-6-4-3-5-7-18/h3-7,17,19-22,26,35H,8-16H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t19-,20-,21-,22-,26+/m0/s1" A1AGH InChIKey InChI 1.06 FDODUQVFBIGMCE-LEUUJVKFSA-N A1AGH SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1CCc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" A1AGH SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1CCc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2CCc3ccccc3" A1AGH SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CCc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGH "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-1-hydroxy-2-{[N-({[(2S)-5-oxo-1-(2-phenylethyl)pyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-4-methyl-2-[[(2~{S})-5-oxidanylidene-1-(2-phenylethyl)pyrrolidin-2-yl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGH "Create component" 2024-02-29 RCSB A1AGH "Initial release" 2024-07-10 RCSB A1AGH "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGH _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #