data_A1AGI # _chem_comp.id A1AGI _chem_comp.name "(1R,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H37 Cl N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 617.111 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ASY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGI C6 C1 C 0 1 N N N N N N -15.413 -3.335 1.904 -5.929 3.942 -1.424 C6 A1AGI 1 A1AGI C1 C2 C 0 1 N N R N N N -17.118 -6.745 6.335 -5.211 -0.284 2.168 C1 A1AGI 2 A1AGI O1 O1 O 0 1 N N N N N N -17.557 -8.083 6.241 -4.250 -1.187 2.719 O1 A1AGI 3 A1AGI O2 O2 O 0 1 N N N N N N -17.070 -1.597 4.443 -2.938 2.283 -0.720 O2 A1AGI 4 A1AGI N1 N1 N 0 1 N N N N N N -15.669 -2.198 2.777 -4.661 3.300 -1.790 N1 A1AGI 5 A1AGI C5 C3 C 0 1 N N N N N N -16.560 -2.441 3.713 -4.006 2.858 -0.702 C5 A1AGI 6 A1AGI C4 C4 C 0 1 N N S N N N -16.880 -3.924 3.719 -4.795 3.181 0.548 C4 A1AGI 7 A1AGI C3 C5 C 0 1 N N N N N N -16.844 -4.571 5.096 -5.518 1.935 1.062 C3 A1AGI 8 A1AGI C2 C6 C 0 1 N N S N N N -17.465 -5.964 5.078 -4.488 0.909 1.540 C2 A1AGI 9 A1AGI C9 C7 C 0 1 N N S N N N -21.138 -6.114 4.000 -1.625 -0.502 -0.573 C9 A1AGI 10 A1AGI C16 C8 C 0 1 N N S N N N -23.197 -2.783 0.556 4.305 -1.901 -0.762 C16 A1AGI 11 A1AGI C10 C9 C 0 1 N N N N N N -21.871 -7.183 4.805 -2.356 -1.644 -1.282 C10 A1AGI 12 A1AGI C11 C10 C 0 1 N N N N N N -23.368 -7.284 4.520 -1.584 -2.038 -2.543 C11 A1AGI 13 A1AGI C12 C11 C 0 1 N N N N N N -24.031 -8.283 5.450 -2.245 -3.260 -3.185 C12 A1AGI 14 A1AGI C14 C12 C 0 1 N N N N N N -21.735 -4.903 1.986 0.740 -0.970 -0.925 C14 A1AGI 15 A1AGI C15 C13 C 0 1 N N N N N N -22.571 -4.009 -0.078 3.037 -1.371 -1.435 C15 A1AGI 16 A1AGI C13 C14 C 0 1 N N N N N N -24.033 -5.924 4.640 -1.595 -0.872 -3.534 C13 A1AGI 17 A1AGI C17 C15 C 0 1 N N N N N N -23.878 -1.894 -1.777 4.677 0.424 0.326 C17 A1AGI 18 A1AGI C18 C16 C 0 1 Y N N N N N -22.594 -1.256 -2.239 6.024 0.919 -0.134 C18 A1AGI 19 A1AGI C19 C17 C 0 1 Y N N N N N -21.833 -0.484 -1.381 6.265 1.114 -1.481 C19 A1AGI 20 A1AGI C21 C18 C 0 1 Y N N N N N -20.223 -0.084 -3.108 8.495 1.828 -0.980 C21 A1AGI 21 A1AGI C22 C19 C 0 1 Y N N N N N -20.985 -0.849 -3.960 8.252 1.638 0.369 C22 A1AGI 22 A1AGI CL1 CL1 CL 0 0 N N N N N N -20.457 -1.089 -5.601 9.498 1.972 1.531 CL1 A1AGI 23 A1AGI C20 C20 C 0 1 Y N N N N N -20.658 0.094 -1.815 7.500 1.568 -1.904 C20 A1AGI 24 A1AGI C23 C21 C 0 1 Y N N N N N -22.159 -1.432 -3.538 7.016 1.184 0.791 C23 A1AGI 25 A1AGI C24 C22 C 0 1 N N N N N N -24.893 -1.212 0.344 5.033 -1.769 1.439 C24 A1AGI 26 A1AGI C25 C23 C 0 1 N N N N N N -25.073 -1.839 1.693 4.913 -3.245 1.129 C25 A1AGI 27 A1AGI C26 C24 C 0 1 N N N N N N -24.262 -3.131 1.597 4.043 -3.294 -0.148 C26 A1AGI 28 A1AGI C7 C25 C 0 1 N N N N N N -15.896 -4.515 2.724 -5.816 4.247 0.086 C7 A1AGI 29 A1AGI C8 C26 C 0 1 N N N N N N -19.634 -6.374 3.980 -2.447 -0.031 0.599 C8 A1AGI 30 A1AGI N2 N2 N 0 1 N N N N N N -18.920 -5.854 4.981 -3.689 0.451 0.401 N2 A1AGI 31 A1AGI N3 N3 N 0 1 N N N N N N -21.679 -6.059 2.660 -0.323 -0.977 -0.097 N3 A1AGI 32 A1AGI N4 N4 N 0 1 N N N N N N -24.007 -1.949 -0.330 4.682 -1.041 0.365 N4 A1AGI 33 A1AGI O3 O3 O 0 1 N N N N N N -22.551 -5.049 0.919 1.937 -1.407 -0.488 O3 A1AGI 34 A1AGI O4 O4 O 0 1 N N N N N N -25.423 -0.191 -0.067 5.393 -1.310 2.502 O4 A1AGI 35 A1AGI O5 O5 O 0 1 N N N N N N -21.153 -3.888 2.298 0.619 -0.571 -2.066 O5 A1AGI 36 A1AGI O6 O6 O 0 1 N N N N N N -19.135 -7.019 3.063 -1.990 -0.087 1.722 O6 A1AGI 37 A1AGI H1 H1 H 0 1 N N N N N N -14.340 -3.425 1.677 -6.059 4.866 -1.987 H1 A1AGI 38 A1AGI H2 H2 H 0 1 N N N N N N -15.980 -3.248 0.966 -6.762 3.265 -1.611 H2 A1AGI 39 A1AGI S1 S1 S 0 1 N Y N N N N -17.558 -6.275 7.190 -6.185 -1.138 0.899 S1 A1AGI 40 A1AGI H4 H4 H 0 1 N N N N N N -16.019 -6.768 6.380 -5.873 0.068 2.959 H4 A1AGI 41 A1AGI H5 H5 H 0 1 N N N N N N -17.329 -8.548 7.037 -3.625 -1.541 2.071 H5 A1AGI 42 A1AGI H6 H6 H 0 1 N N N N N N -15.210 -1.315 2.674 -4.337 3.206 -2.699 H6 A1AGI 43 A1AGI H7 H7 H 0 1 N N N N N N -17.893 -4.054 3.311 -4.140 3.586 1.319 H7 A1AGI 44 A1AGI H8 H8 H 0 1 N N N N N N -15.798 -4.651 5.426 -6.170 2.209 1.891 H8 A1AGI 45 A1AGI H9 H9 H 0 1 N N N N N N -17.404 -3.940 5.802 -6.114 1.503 0.258 H9 A1AGI 46 A1AGI H10 H10 H 0 1 N N N N N N -17.079 -6.510 4.205 -3.834 1.369 2.281 H10 A1AGI 47 A1AGI H11 H11 H 0 1 N N N N N N -21.307 -5.145 4.493 -1.478 0.324 -1.269 H11 A1AGI 48 A1AGI H12 H12 H 0 1 N N N N N N -22.412 -2.177 1.031 5.120 -1.955 -1.485 H12 A1AGI 49 A1AGI H13 H13 H 0 1 N N N N N N -21.413 -8.157 4.578 -2.424 -2.503 -0.614 H13 A1AGI 50 A1AGI H14 H14 H 0 1 N N N N N N -21.740 -6.957 5.873 -3.359 -1.317 -1.558 H14 A1AGI 51 A1AGI H15 H15 H 0 1 N N N N N N -23.496 -7.639 3.487 -0.554 -2.280 -2.278 H15 A1AGI 52 A1AGI H16 H16 H 0 1 N N N N N N -23.538 -9.261 5.350 -1.694 -3.540 -4.083 H16 A1AGI 53 A1AGI H17 H17 H 0 1 N N N N N N -23.942 -7.932 6.489 -2.236 -4.090 -2.479 H17 A1AGI 54 A1AGI H18 H18 H 0 1 N N N N N N -25.094 -8.380 5.186 -3.274 -3.018 -3.450 H18 A1AGI 55 A1AGI H19 H19 H 0 1 N N N N N N -23.168 -4.330 -0.944 3.202 -0.344 -1.762 H19 A1AGI 56 A1AGI H20 H20 H 0 1 N N N N N N -21.545 -3.781 -0.404 2.796 -1.993 -2.296 H20 A1AGI 57 A1AGI H21 H21 H 0 1 N N N N N N -25.109 -6.021 4.431 -2.624 -0.631 -3.799 H21 A1AGI 58 A1AGI H22 H22 H 0 1 N N N N N N -23.892 -5.535 5.659 -1.124 -0.002 -3.076 H22 A1AGI 59 A1AGI H23 H23 H 0 1 N N N N N N -23.580 -5.230 3.917 -1.045 -1.153 -4.432 H23 A1AGI 60 A1AGI H24 H24 H 0 1 N N N N N N -24.721 -1.313 -2.180 4.467 0.813 1.322 H24 A1AGI 61 A1AGI H25 H25 H 0 1 N N N N N N -23.918 -2.921 -2.170 3.908 0.766 -0.367 H25 A1AGI 62 A1AGI H26 H26 H 0 1 N N N N N N -22.161 -0.332 -0.363 5.488 0.910 -2.204 H26 A1AGI 63 A1AGI H27 H27 H 0 1 N N N N N N -19.302 0.368 -3.447 9.459 2.184 -1.311 H27 A1AGI 64 A1AGI H28 H28 H 0 1 N N N N N N -20.073 0.693 -1.132 7.688 1.720 -2.957 H28 A1AGI 65 A1AGI H29 H29 H 0 1 N N N N N N -22.741 -2.029 -4.225 6.826 1.036 1.844 H29 A1AGI 66 A1AGI H30 H30 H 0 1 N N N N N N -24.680 -1.186 2.486 5.896 -3.676 0.938 H30 A1AGI 67 A1AGI H31 H31 H 0 1 N N N N N N -26.134 -2.054 1.888 4.421 -3.768 1.949 H31 A1AGI 68 A1AGI H32 H32 H 0 1 N N N N N N -24.889 -3.969 1.258 2.989 -3.417 0.102 H32 A1AGI 69 A1AGI H33 H33 H 0 1 N N N N N N -23.803 -3.384 2.564 4.378 -4.085 -0.819 H33 A1AGI 70 A1AGI H34 H34 H 0 1 N N N N N N -16.394 -5.255 2.081 -5.432 5.253 0.253 H34 A1AGI 71 A1AGI H35 H35 H 0 1 N N N N N N -15.055 -4.992 3.248 -6.776 4.109 0.585 H35 A1AGI 72 A1AGI H36 H36 H 0 1 N N N N N N -19.406 -5.363 5.704 -4.055 0.496 -0.497 H36 A1AGI 73 A1AGI H37 H37 H 0 1 N N N N N N -22.016 -6.897 2.230 -0.226 -1.296 0.814 H37 A1AGI 74 A1AGI O8 O8 O 0 1 N Y N N N N ? ? ? -6.847 -2.291 1.640 O8 A1AGI 75 A1AGI O9 O9 O 0 1 N Y N N N N ? ? ? -7.270 -0.326 0.472 O9 A1AGI 76 A1AGI O7 O7 O 0 1 N Y N N N N ? ? ? -5.330 -1.772 -0.043 O7 A1AGI 77 A1AGI H3 H3 H 0 1 N N N N N N ? ? ? -7.409 -2.846 1.082 H3 A1AGI 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGI CL1 C22 SING N N 1 A1AGI C22 C23 DOUB Y N 2 A1AGI C22 C21 SING Y N 3 A1AGI C23 C18 SING Y N 4 A1AGI C21 C20 DOUB Y N 5 A1AGI C18 C17 SING N N 6 A1AGI C18 C19 DOUB Y N 7 A1AGI C20 C19 SING Y N 8 A1AGI C17 N4 SING N N 9 A1AGI N4 C24 SING N N 10 A1AGI N4 C16 SING N N 11 A1AGI C15 C16 SING N N 12 A1AGI C15 O3 SING N N 13 A1AGI O4 C24 DOUB N N 14 A1AGI C24 C25 SING N N 15 A1AGI C16 C26 SING N N 16 A1AGI O3 C14 SING N N 17 A1AGI C26 C25 SING N N 18 A1AGI C6 C7 SING N N 19 A1AGI C6 N1 SING N N 20 A1AGI C14 O5 DOUB N N 21 A1AGI C14 N3 SING N N 22 A1AGI N3 C9 SING N N 23 A1AGI C7 C4 SING N N 24 A1AGI N1 C5 SING N N 25 A1AGI O6 C8 DOUB N N 26 A1AGI C5 C4 SING N N 27 A1AGI C5 O2 DOUB N N 28 A1AGI C4 C3 SING N N 29 A1AGI C8 C9 SING N N 30 A1AGI C8 N2 SING N N 31 A1AGI C9 C10 SING N N 32 A1AGI C11 C13 SING N N 33 A1AGI C11 C10 SING N N 34 A1AGI C11 C12 SING N N 35 A1AGI N2 C2 SING N N 36 A1AGI C2 C3 SING N N 37 A1AGI C2 C1 SING N N 38 A1AGI O1 C1 SING N N 39 A1AGI C6 H1 SING N N 40 A1AGI C6 H2 SING N N 41 A1AGI C1 S1 SING N N 42 A1AGI C1 H4 SING N N 43 A1AGI O1 H5 SING N N 44 A1AGI N1 H6 SING N N 45 A1AGI C4 H7 SING N N 46 A1AGI C3 H8 SING N N 47 A1AGI C3 H9 SING N N 48 A1AGI C2 H10 SING N N 49 A1AGI C9 H11 SING N N 50 A1AGI C16 H12 SING N N 51 A1AGI C10 H13 SING N N 52 A1AGI C10 H14 SING N N 53 A1AGI C11 H15 SING N N 54 A1AGI C12 H16 SING N N 55 A1AGI C12 H17 SING N N 56 A1AGI C12 H18 SING N N 57 A1AGI C15 H19 SING N N 58 A1AGI C15 H20 SING N N 59 A1AGI C13 H21 SING N N 60 A1AGI C13 H22 SING N N 61 A1AGI C13 H23 SING N N 62 A1AGI C17 H24 SING N N 63 A1AGI C17 H25 SING N N 64 A1AGI C19 H26 SING N N 65 A1AGI C21 H27 SING N N 66 A1AGI C20 H28 SING N N 67 A1AGI C23 H29 SING N N 68 A1AGI C25 H30 SING N N 69 A1AGI C25 H31 SING N N 70 A1AGI C26 H32 SING N N 71 A1AGI C26 H33 SING N N 72 A1AGI C7 H34 SING N N 73 A1AGI C7 H35 SING N N 74 A1AGI N2 H36 SING N N 75 A1AGI N3 H37 SING N N 76 A1AGI S1 O8 SING N N 77 A1AGI S1 O9 DOUB N N 78 A1AGI S1 O7 DOUB N N 79 A1AGI O8 H3 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGI SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1Cc1cc(Cl)ccc1)C(O)S(=O)(=O)O" A1AGI InChI InChI 1.06 "InChI=1S/C26H37ClN4O9S/c1-15(2)10-20(24(34)29-21(25(35)41(37,38)39)12-17-8-9-28-23(17)33)30-26(36)40-14-19-6-7-22(32)31(19)13-16-4-3-5-18(27)11-16/h3-5,11,15,17,19-21,25,35H,6-10,12-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t17-,19-,20-,21-,25+/m0/s1" A1AGI InChIKey InChI 1.06 JNJYSDKMQGAPIR-SCILSMOKSA-N A1AGI SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1Cc2cccc(Cl)c2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" A1AGI SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1Cc2cccc(Cl)c2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2Cc3cccc(c3)Cl" A1AGI SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2Cc3cccc(c3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGI "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[(3-chlorophenyl)methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGI "Create component" 2024-02-29 RCSB A1AGI "Initial release" 2024-07-10 RCSB A1AGI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #