data_A1AGJ # _chem_comp.id A1AGJ _chem_comp.name "(1S,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H37 Cl N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 617.111 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ASY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGJ C1 C1 C 0 1 N N S N N N -17.186 -6.793 6.322 -5.276 1.000 -1.587 C1 A1AGJ 1 A1AGJ C2 C2 C 0 1 N N S N N N -17.546 -5.989 5.085 -4.362 -0.225 -1.533 C2 A1AGJ 2 A1AGJ C3 C3 C 0 1 N N N N N N -16.958 -4.580 5.134 -5.213 -1.490 -1.406 C3 A1AGJ 3 A1AGJ C7 C4 C 0 1 N N N N N N -15.839 -4.544 2.841 -5.156 -4.016 -1.476 C7 A1AGJ 4 A1AGJ C8 C5 C 0 1 N N N N N N -19.697 -6.377 3.954 -2.318 0.575 -0.476 C8 A1AGJ 5 A1AGJ C9 C6 C 0 1 N N S N N N -21.202 -6.134 3.977 -1.334 0.569 0.666 C9 A1AGJ 6 A1AGJ C10 C7 C 0 1 N N N N N N -21.919 -7.225 4.765 -1.874 1.433 1.808 C10 A1AGJ 7 A1AGJ C11 C8 C 0 1 N N N N N N -23.424 -7.310 4.519 -3.095 0.752 2.430 C11 A1AGJ 8 A1AGJ C12 C9 C 0 1 N N N N N N -24.070 -8.307 5.462 -2.661 -0.545 3.116 C12 A1AGJ 9 A1AGJ C13 C10 C 0 1 N N N N N N -24.071 -5.944 4.664 -3.730 1.686 3.461 C13 A1AGJ 10 A1AGJ C14 C11 C 0 1 N N N N N N -21.757 -4.909 1.961 1.079 0.826 0.884 C14 A1AGJ 11 A1AGJ C15 C12 C 0 1 N N N N N N -22.576 -3.981 -0.095 3.419 1.051 1.297 C15 A1AGJ 12 A1AGJ C16 C13 C 0 1 N N S N N N -23.199 -2.762 0.557 4.633 1.800 0.745 C16 A1AGJ 13 A1AGJ C19 C14 C 0 1 Y N N N N N -21.822 -0.449 -1.372 7.131 -0.512 -2.033 C19 A1AGJ 14 A1AGJ C20 C15 C 0 1 Y N N N N N -20.637 0.112 -1.801 8.390 -1.070 -1.912 C20 A1AGJ 15 A1AGJ C21 C16 C 0 1 Y N N N N N -20.187 -0.092 -3.086 8.749 -1.719 -0.746 C21 A1AGJ 16 A1AGJ C22 C17 C 0 1 Y N N N N N -20.944 -0.867 -3.933 7.848 -1.810 0.301 C22 A1AGJ 17 A1AGJ C23 C18 C 0 1 Y N N N N N -22.128 -1.433 -3.516 6.588 -1.251 0.179 C23 A1AGJ 18 A1AGJ C17 C19 C 0 1 N N N N N N -23.872 -1.850 -1.769 4.860 0.011 -1.120 C17 A1AGJ 19 A1AGJ C18 C20 C 0 1 Y N N N N N -22.578 -1.230 -2.226 6.232 -0.597 -0.986 C18 A1AGJ 20 A1AGJ C6 C21 C 0 1 N N N N N N -15.353 -3.383 1.996 -5.179 -4.377 0.026 C6 A1AGJ 21 A1AGJ N1 N1 N 0 1 N N N N N N -15.688 -2.220 2.806 -3.970 -3.768 0.593 N1 A1AGJ 22 A1AGJ N2 N2 N 0 1 N N N N N N -19.002 -5.909 4.990 -3.470 -0.118 -0.377 N2 A1AGJ 23 A1AGJ N3 N3 N 0 1 N N N N N N -21.745 -6.064 2.639 -0.052 1.110 0.208 N3 A1AGJ 24 A1AGJ C5 C22 C 0 1 N N N N N N -16.589 -2.462 3.735 -3.463 -2.832 -0.228 C5 A1AGJ 25 A1AGJ C4 C23 C 0 1 N N S N N N -16.899 -3.947 3.749 -4.309 -2.723 -1.477 C4 A1AGJ 26 A1AGJ N4 N4 N 0 1 N N N N N N -24.003 -1.916 -0.323 4.892 1.396 -0.642 N4 A1AGJ 27 A1AGJ CL1 CL1 CL 0 0 N N N N N N -20.397 -1.139 -5.563 8.295 -2.631 1.763 CL1 A1AGJ 28 A1AGJ C24 C24 C 0 1 N N N N N N -24.890 -1.185 0.356 5.161 2.460 -1.418 C24 A1AGJ 29 A1AGJ C25 C25 C 0 1 N N N N N N -25.062 -1.814 1.704 5.098 3.731 -0.600 C25 A1AGJ 30 A1AGJ C26 C26 C 0 1 N N N N N N -24.270 -3.116 1.590 4.345 3.316 0.686 C26 A1AGJ 31 A1AGJ O1 O1 O 0 1 N N N N N N -15.776 -6.960 6.425 -6.224 0.842 -2.645 O1 A1AGJ 32 A1AGJ O2 O2 O 0 1 N N N N N N -17.113 -1.614 4.451 -2.473 -2.170 0.001 O2 A1AGJ 33 A1AGJ O3 O3 O 0 1 N N N N N N -22.565 -5.037 0.885 2.241 1.403 0.524 O3 A1AGJ 34 A1AGJ O4 O4 O 0 1 N N N N N N -25.430 -0.169 -0.055 5.418 2.409 -2.603 O4 A1AGJ 35 A1AGJ O5 O5 O 0 1 N N N N N N -21.150 -3.910 2.277 1.050 0.049 1.817 O5 A1AGJ 36 A1AGJ O6 O6 O 0 1 N N N N N N -19.180 -6.971 3.012 -2.074 1.204 -1.484 O6 A1AGJ 37 A1AGJ H1 H1 H 0 1 N N N N N N -17.639 -7.788 6.200 -4.677 1.893 -1.767 H1 A1AGJ 38 A1AGJ S1 S1 S 0 1 N Y N N N N -17.525 -6.256 7.183 -6.155 1.170 -0.009 S1 A1AGJ 39 A1AGJ H3 H3 H 0 1 N N N N N N -17.148 -6.506 4.199 -3.769 -0.277 -2.446 H3 A1AGJ 40 A1AGJ H4 H4 H 0 1 N N N N N N -15.939 -4.633 5.546 -5.739 -1.480 -0.451 H4 A1AGJ 41 A1AGJ H5 H5 H 0 1 N N N N N N -17.585 -3.954 5.786 -5.938 -1.524 -2.219 H5 A1AGJ 42 A1AGJ H6 H6 H 0 1 N N N N N N -16.272 -5.331 2.206 -4.671 -4.800 -2.058 H6 A1AGJ 43 A1AGJ H7 H7 H 0 1 N N N N N N -15.013 -4.964 3.434 -6.162 -3.824 -1.848 H7 A1AGJ 44 A1AGJ H8 H8 H 0 1 N N N N N N -21.382 -5.175 4.486 -1.193 -0.452 1.018 H8 A1AGJ 45 A1AGJ H9 H9 H 0 1 N N N N N N -21.473 -8.193 4.493 -1.101 1.555 2.567 H9 A1AGJ 46 A1AGJ H10 H10 H 0 1 N N N N N N -21.758 -7.035 5.836 -2.161 2.410 1.420 H10 A1AGJ 47 A1AGJ H11 H11 H 0 1 N N N N N N -23.583 -7.658 3.488 -3.821 0.525 1.649 H11 A1AGJ 48 A1AGJ H12 H12 H 0 1 N N N N N N -23.589 -9.289 5.343 -3.540 -1.071 3.488 H12 A1AGJ 49 A1AGJ H13 H13 H 0 1 N N N N N N -23.948 -7.962 6.499 -2.136 -1.178 2.399 H13 A1AGJ 50 A1AGJ H14 H14 H 0 1 N N N N N N -25.141 -8.392 5.227 -1.998 -0.312 3.948 H14 A1AGJ 51 A1AGJ H15 H15 H 0 1 N N N N N N -25.153 -6.029 4.483 -4.039 2.610 2.972 H15 A1AGJ 52 A1AGJ H16 H16 H 0 1 N N N N N N -23.898 -5.563 5.681 -4.600 1.201 3.903 H16 A1AGJ 53 A1AGJ H17 H17 H 0 1 N N N N N N -23.630 -5.250 3.933 -3.004 1.913 4.241 H17 A1AGJ 54 A1AGJ H18 H18 H 0 1 N N N N N N -23.171 -4.285 -0.969 3.591 -0.023 1.227 H18 A1AGJ 55 A1AGJ H19 H19 H 0 1 N N N N N N -21.548 -3.753 -0.413 3.265 1.327 2.340 H19 A1AGJ 56 A1AGJ H20 H20 H 0 1 N N N N N N -22.412 -2.165 1.041 5.509 1.607 1.365 H20 A1AGJ 57 A1AGJ H21 H21 H 0 1 N N N N N N -22.162 -0.277 -0.361 6.851 -0.005 -2.945 H21 A1AGJ 58 A1AGJ H22 H22 H 0 1 N N N N N N -20.056 0.718 -1.121 9.093 -0.998 -2.728 H22 A1AGJ 59 A1AGJ H23 H23 H 0 1 N N N N N N -19.259 0.347 -3.422 9.732 -2.155 -0.651 H23 A1AGJ 60 A1AGJ H24 H24 H 0 1 N N N N N N -22.706 -2.037 -4.199 5.885 -1.322 0.995 H24 A1AGJ 61 A1AGJ H25 H25 H 0 1 N N N N N N -24.705 -1.252 -2.167 4.555 -0.005 -2.166 H25 A1AGJ 62 A1AGJ H26 H26 H 0 1 N N N N N N -23.930 -2.872 -2.171 4.149 -0.562 -0.525 H26 A1AGJ 63 A1AGJ H27 H27 H 0 1 N N N N N N -15.875 -3.354 1.028 -6.068 -3.961 0.500 H27 A1AGJ 64 A1AGJ H28 H28 H 0 1 N N N N N N -14.268 -3.446 1.826 -5.153 -5.459 0.154 H28 A1AGJ 65 A1AGJ H29 H29 H 0 1 N N N N N N -15.272 -1.321 2.669 -3.586 -4.011 1.450 H29 A1AGJ 66 A1AGJ H30 H30 H 0 1 N N N N N N -19.503 -5.481 5.742 -3.707 -0.547 0.461 H30 A1AGJ 67 A1AGJ H31 H31 H 0 1 N N N N N N -22.117 -6.889 2.214 -0.017 1.673 -0.581 H31 A1AGJ 68 A1AGJ H32 H32 H 0 1 N N N N N N -17.878 -4.094 3.269 -3.676 -2.681 -2.364 H32 A1AGJ 69 A1AGJ H33 H33 H 0 1 N N N N N N -24.649 -1.170 2.495 6.102 4.079 -0.358 H33 A1AGJ 70 A1AGJ H34 H34 H 0 1 N N N N N N -26.123 -2.016 1.912 4.545 4.503 -1.136 H34 A1AGJ 71 A1AGJ H35 H35 H 0 1 N N N N N N -24.907 -3.939 1.236 3.276 3.507 0.590 H35 A1AGJ 72 A1AGJ H36 H36 H 0 1 N N N N N N -23.817 -3.392 2.554 4.754 3.826 1.559 H36 A1AGJ 73 A1AGJ H37 H37 H 0 1 N N N N N N -15.572 -7.465 7.204 -6.793 0.066 -2.550 H37 A1AGJ 74 A1AGJ O9 O9 O 0 1 N Y N N N N ? ? ? -5.273 1.631 1.005 O9 A1AGJ 75 A1AGJ O8 O8 O 0 1 N Y N N N N ? ? ? -7.113 2.331 -0.230 O8 A1AGJ 76 A1AGJ O7 O7 O 0 1 N Y N N N N ? ? ? -7.004 0.052 0.212 O7 A1AGJ 77 A1AGJ H2 H2 H 0 1 N N N N N N ? ? ? -7.659 2.543 0.539 H2 A1AGJ 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGJ CL1 C22 SING N N 1 A1AGJ C22 C23 DOUB Y N 2 A1AGJ C22 C21 SING Y N 3 A1AGJ C23 C18 SING Y N 4 A1AGJ C21 C20 DOUB Y N 5 A1AGJ C18 C17 SING N N 6 A1AGJ C18 C19 DOUB Y N 7 A1AGJ C20 C19 SING Y N 8 A1AGJ C17 N4 SING N N 9 A1AGJ N4 C24 SING N N 10 A1AGJ N4 C16 SING N N 11 A1AGJ C15 C16 SING N N 12 A1AGJ C15 O3 SING N N 13 A1AGJ O4 C24 DOUB N N 14 A1AGJ C24 C25 SING N N 15 A1AGJ C16 C26 SING N N 16 A1AGJ O3 C14 SING N N 17 A1AGJ C26 C25 SING N N 18 A1AGJ C14 O5 DOUB N N 19 A1AGJ C14 N3 SING N N 20 A1AGJ C6 N1 SING N N 21 A1AGJ C6 C7 SING N N 22 A1AGJ N3 C9 SING N N 23 A1AGJ N1 C5 SING N N 24 A1AGJ C7 C4 SING N N 25 A1AGJ O6 C8 DOUB N N 26 A1AGJ C5 C4 SING N N 27 A1AGJ C5 O2 DOUB N N 28 A1AGJ C4 C3 SING N N 29 A1AGJ C8 C9 SING N N 30 A1AGJ C8 N2 SING N N 31 A1AGJ C9 C10 SING N N 32 A1AGJ C11 C13 SING N N 33 A1AGJ C11 C10 SING N N 34 A1AGJ C11 C12 SING N N 35 A1AGJ N2 C2 SING N N 36 A1AGJ C2 C3 SING N N 37 A1AGJ C2 C1 SING N N 38 A1AGJ C1 O1 SING N N 39 A1AGJ C1 H1 SING N N 40 A1AGJ C1 S1 SING N N 41 A1AGJ C2 H3 SING N N 42 A1AGJ C3 H4 SING N N 43 A1AGJ C3 H5 SING N N 44 A1AGJ C7 H6 SING N N 45 A1AGJ C7 H7 SING N N 46 A1AGJ C9 H8 SING N N 47 A1AGJ C10 H9 SING N N 48 A1AGJ C10 H10 SING N N 49 A1AGJ C11 H11 SING N N 50 A1AGJ C12 H12 SING N N 51 A1AGJ C12 H13 SING N N 52 A1AGJ C12 H14 SING N N 53 A1AGJ C13 H15 SING N N 54 A1AGJ C13 H16 SING N N 55 A1AGJ C13 H17 SING N N 56 A1AGJ C15 H18 SING N N 57 A1AGJ C15 H19 SING N N 58 A1AGJ C16 H20 SING N N 59 A1AGJ C19 H21 SING N N 60 A1AGJ C20 H22 SING N N 61 A1AGJ C21 H23 SING N N 62 A1AGJ C23 H24 SING N N 63 A1AGJ C17 H25 SING N N 64 A1AGJ C17 H26 SING N N 65 A1AGJ C6 H27 SING N N 66 A1AGJ C6 H28 SING N N 67 A1AGJ N1 H29 SING N N 68 A1AGJ N2 H30 SING N N 69 A1AGJ N3 H31 SING N N 70 A1AGJ C4 H32 SING N N 71 A1AGJ C25 H33 SING N N 72 A1AGJ C25 H34 SING N N 73 A1AGJ C26 H35 SING N N 74 A1AGJ C26 H36 SING N N 75 A1AGJ O1 H37 SING N N 76 A1AGJ S1 O9 DOUB N N 77 A1AGJ S1 O8 SING N N 78 A1AGJ S1 O7 DOUB N N 79 A1AGJ O8 H2 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGJ SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1Cc1cc(Cl)ccc1)C(O)S(=O)(=O)O" A1AGJ InChI InChI 1.06 "InChI=1S/C26H37ClN4O9S/c1-15(2)10-20(24(34)29-21(25(35)41(37,38)39)12-17-8-9-28-23(17)33)30-26(36)40-14-19-6-7-22(32)31(19)13-16-4-3-5-18(27)11-16/h3-5,11,15,17,19-21,25,35H,6-10,12-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t17-,19-,20-,21-,25-/m0/s1" A1AGJ InChIKey InChI 1.06 JNJYSDKMQGAPIR-BEGIFEFTSA-N A1AGJ SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1Cc2cccc(Cl)c2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" A1AGJ SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1Cc2cccc(Cl)c2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2Cc3cccc(c3)Cl" A1AGJ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2Cc3cccc(c3)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGJ "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-({N-[({(2S)-1-[(3-chlorophenyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[(3-chlorophenyl)methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGJ "Create component" 2024-02-29 RCSB A1AGJ "Initial release" 2024-07-10 RCSB A1AGJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #