data_A1AGM # _chem_comp.id A1AGM _chem_comp.name "(1R,2S)-2-{[N-({[(2S)-1-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H44 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 600.725 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AT4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGM N1 N1 N 0 1 N N N N N N 11.685 23.463 26.764 0.413 1.052 0.686 N1 A1AGM 1 A1AGM N2 N2 N 0 1 N N N N N N 10.112 20.350 27.206 -3.052 -0.144 0.363 N2 A1AGM 2 A1AGM C1 C1 C 0 1 N N N N N N 9.353 28.539 23.745 5.478 2.445 -1.334 C1 A1AGM 3 A1AGM C2 C2 C 0 1 N N N N N N 7.983 27.966 23.513 5.488 3.690 -0.475 C2 A1AGM 4 A1AGM C3 C3 C 0 1 N N N N N N 7.623 27.368 24.853 4.843 3.237 0.856 C3 A1AGM 5 A1AGM C4 C4 C 0 1 N N S N N N 8.971 26.934 25.436 5.130 1.719 0.844 C4 A1AGM 6 A1AGM C5 C5 C 0 1 N N N N N N 9.365 25.519 25.046 3.964 0.955 1.474 C5 A1AGM 7 A1AGM C6 C6 C 0 1 N N N N N N 10.684 23.779 25.923 1.596 0.746 1.254 C6 A1AGM 8 A1AGM C7 C7 C 0 1 N N S N N N 11.848 22.066 27.121 -0.828 0.499 1.234 C7 A1AGM 9 A1AGM N3 N3 N 0 1 N N N N N N 5.411 21.824 25.084 -3.553 -3.907 0.809 N3 A1AGM 10 A1AGM C8 C8 C 0 1 N N N N N N 12.942 21.858 28.166 -1.267 1.329 2.442 C8 A1AGM 11 A1AGM C10 C9 C 0 1 N N N N N N 15.337 22.021 28.842 -2.219 -0.659 3.617 C10 A1AGM 12 A1AGM C11 C10 C 0 1 N N N N N N 14.734 21.452 26.480 -3.056 1.631 4.160 C11 A1AGM 13 A1AGM C12 C11 C 0 1 N N N N N N 10.510 21.552 27.649 -1.904 0.538 0.180 C12 A1AGM 14 A1AGM C13 C12 C 0 1 N N S N N N 8.852 19.728 27.619 -4.123 -0.056 -0.633 C13 A1AGM 15 A1AGM C14 C13 C 0 1 N N N N N N 7.870 19.616 26.451 -5.008 -1.301 -0.540 C14 A1AGM 16 A1AGM C9 C14 C 0 1 N N N N N N 14.342 22.242 27.715 -2.536 0.723 3.043 C9 A1AGM 17 A1AGM N4 N4 N 0 1 N N N N N N 9.901 27.891 24.801 5.271 1.358 -0.572 N4 A1AGM 18 A1AGM C15 C15 C 0 1 N N S N N N 7.384 20.984 25.961 -4.207 -2.530 -0.972 C15 A1AGM 19 A1AGM C17 C16 C 0 1 N N N N N N 5.734 22.710 26.195 -4.880 -4.380 0.398 C17 A1AGM 20 A1AGM C18 C17 C 0 1 N N N N N N 6.720 21.884 27.010 -5.114 -3.782 -1.007 C18 A1AGM 21 A1AGM C19 C18 C 0 1 N N R N N N 9.122 18.376 28.253 -4.967 1.191 -0.366 C19 A1AGM 22 A1AGM C20 C19 C 0 1 N N N N N N 11.269 28.078 25.284 5.194 -0.011 -1.087 C20 A1AGM 23 A1AGM C21 C20 C 0 1 N N S N N N 11.344 29.009 26.478 6.591 -0.635 -1.087 C21 A1AGM 24 A1AGM C22 C21 C 0 1 N N N N N N 12.781 29.525 26.696 7.101 -0.817 0.361 C22 A1AGM 25 A1AGM C23 C22 C 0 1 N N R N N N 12.648 31.005 26.766 7.311 -2.354 0.514 C23 A1AGM 26 A1AGM C16 C23 C 0 1 N N N N N N 6.320 20.874 24.877 -3.155 -2.861 0.064 C16 A1AGM 27 A1AGM C24 C24 C 0 1 N N N N N N 11.900 31.374 28.044 8.547 -2.671 -0.382 C24 A1AGM 28 A1AGM C25 C25 C 0 1 N N N N N N 10.443 30.970 27.740 8.038 -2.489 -1.829 C25 A1AGM 29 A1AGM C26 C26 C 0 1 N N S N N N 10.542 30.315 26.359 6.541 -2.079 -1.672 C26 A1AGM 30 A1AGM C27 C27 C 0 1 N N N N N N 11.595 31.249 25.718 6.150 -2.898 -0.392 C27 A1AGM 31 A1AGM O1 O1 O 0 1 N N N N N N 9.918 29.408 23.082 5.630 2.431 -2.537 O1 A1AGM 32 A1AGM O2 O2 O 0 1 N N N N N N 10.506 25.114 25.845 2.726 1.332 0.815 O2 A1AGM 33 A1AGM O3 O3 O 0 1 N N N N N N 6.310 20.039 23.966 -2.103 -2.273 0.198 O3 A1AGM 34 A1AGM O4 O4 O 0 1 N N N N N N 9.905 18.543 29.426 -5.662 1.040 0.874 O4 A1AGM 35 A1AGM O5 O5 O 0 1 N N N N N N 9.828 22.256 28.404 -1.737 1.182 -0.834 O5 A1AGM 36 A1AGM O6 O6 O 0 1 N N N N N N 10.028 22.972 25.296 1.643 -0.060 2.163 O6 A1AGM 37 A1AGM H1 H1 H 0 1 N N N N N N 12.295 24.166 27.130 0.383 1.642 -0.084 H1 A1AGM 38 A1AGM H2 H2 H 0 1 N N N N N N 10.701 19.857 26.566 -3.169 -0.692 1.155 H2 A1AGM 39 A1AGM H3 H3 H 0 1 N N N N N N 7.270 28.754 23.229 6.510 4.030 -0.307 H3 A1AGM 40 A1AGM H4 H4 H 0 1 N N N N N N 8.007 27.193 22.731 4.894 4.478 -0.937 H4 A1AGM 41 A1AGM H5 H5 H 0 1 N N N N N N 7.140 28.116 25.499 5.325 3.718 1.707 H5 A1AGM 42 A1AGM H6 H6 H 0 1 N N N N N N 6.954 26.504 24.729 3.771 3.431 0.856 H6 A1AGM 43 A1AGM H7 H7 H 0 1 N N N N N N 8.970 27.047 26.530 6.054 1.505 1.381 H7 A1AGM 44 A1AGM H8 H8 H 0 1 N N N N N N 8.523 24.836 25.232 4.125 -0.117 1.357 H8 A1AGM 45 A1AGM H9 H9 H 0 1 N N N N N N 9.632 25.490 23.979 3.900 1.199 2.534 H9 A1AGM 46 A1AGM H10 H10 H 0 1 N N N N N N 12.112 21.488 26.223 -0.660 -0.533 1.544 H10 A1AGM 47 A1AGM H11 H11 H 0 1 N N N N N N 4.584 21.921 24.529 -3.032 -4.296 1.529 H11 A1AGM 48 A1AGM H12 H12 H 0 1 N N N N N N 12.690 22.463 29.049 -0.474 1.329 3.190 H12 A1AGM 49 A1AGM H13 H13 H 0 1 N N N N N N 12.952 20.793 28.442 -1.467 2.353 2.125 H13 A1AGM 50 A1AGM H14 H14 H 0 1 N N N N N N 15.030 22.604 29.723 -3.137 -1.123 3.977 H14 A1AGM 51 A1AGM H15 H15 H 0 1 N N N N N N 15.366 20.952 29.101 -1.777 -1.283 2.840 H15 A1AGM 52 A1AGM H16 H16 H 0 1 N N N N N N 16.336 22.347 28.518 -1.516 -0.557 4.444 H16 A1AGM 53 A1AGM H17 H17 H 0 1 N N N N N N 15.748 21.740 26.166 -3.282 2.616 3.751 H17 A1AGM 54 A1AGM H18 H18 H 0 1 N N N N N N 14.714 20.377 26.711 -3.960 1.199 4.588 H18 A1AGM 55 A1AGM H19 H19 H 0 1 N N N N N N 14.024 21.666 25.667 -2.295 1.726 4.935 H19 A1AGM 56 A1AGM H20 H20 H 0 1 N N N N N N 8.385 20.367 28.383 -3.687 0.006 -1.630 H20 A1AGM 57 A1AGM H21 H21 H 0 1 N N N N N N 6.999 19.028 26.777 -5.346 -1.430 0.488 H21 A1AGM 58 A1AGM H22 H22 H 0 1 N N N N N N 8.370 19.100 25.618 -5.872 -1.181 -1.194 H22 A1AGM 59 A1AGM H23 H23 H 0 1 N N N N N N 14.342 23.311 27.457 -3.296 0.629 2.268 H23 A1AGM 60 A1AGM H24 H24 H 0 1 N N N N N N 8.246 21.524 25.543 -3.750 -2.363 -1.947 H24 A1AGM 61 A1AGM H25 H25 H 0 1 N N N N N N 6.198 23.641 25.837 -4.895 -5.469 0.352 H25 A1AGM 62 A1AGM H26 H26 H 0 1 N N N N N N 4.837 22.950 26.784 -5.641 -4.021 1.092 H26 A1AGM 63 A1AGM H27 H27 H 0 1 N N N N N N 6.197 21.284 27.769 -6.158 -3.503 -1.147 H27 A1AGM 64 A1AGM H28 H28 H 0 1 N N N N N N 7.463 22.530 27.501 -4.790 -4.477 -1.782 H28 A1AGM 65 A1AGM S1 S1 S 0 1 N Y N N N N 9.627 17.737 27.559 -6.167 1.408 -1.709 S1 A1AGM 66 A1AGM H30 H30 H 0 1 N N N N N N 8.143 17.985 28.567 -4.318 2.065 -0.314 H30 A1AGM 67 A1AGM H31 H31 H 0 1 N N N N N N 11.677 27.099 25.575 4.533 -0.602 -0.453 H31 A1AGM 68 A1AGM H32 H32 H 0 1 N N N N N N 11.876 28.500 24.469 4.803 0.005 -2.104 H32 A1AGM 69 A1AGM H33 H33 H 0 1 N N N N N N 11.018 28.470 27.380 7.283 -0.015 -1.659 H33 A1AGM 70 A1AGM H34 H34 H 0 1 N N N N N N 13.197 29.129 27.634 8.044 -0.289 0.501 H34 A1AGM 71 A1AGM H35 H35 H 0 1 N N N N N N 13.429 29.234 25.856 6.356 -0.462 1.073 H35 A1AGM 72 A1AGM H36 H36 H 0 1 N N N N N N 13.584 31.562 26.613 7.354 -2.729 1.537 H36 A1AGM 73 A1AGM H37 H37 H 0 1 N N N N N N 12.292 30.812 28.905 9.356 -1.971 -0.173 H37 A1AGM 74 A1AGM H39 H39 H 0 1 N N N N N N 9.787 31.852 27.712 8.597 -1.700 -2.333 H39 A1AGM 75 A1AGM H41 H41 H 0 1 N N N N N N 9.594 30.234 25.808 5.915 -2.215 -2.554 H41 A1AGM 76 A1AGM H42 H42 H 0 1 N N N N N N 11.905 30.921 24.715 6.227 -3.973 -0.554 H42 A1AGM 77 A1AGM H43 H43 H 0 1 N N N N N N 11.268 32.298 25.676 5.168 -2.616 -0.011 H43 A1AGM 78 A1AGM H44 H44 H 0 1 N N N N N N 10.072 17.695 29.820 -5.082 0.920 1.638 H44 A1AGM 79 A1AGM O9 O9 O 0 1 N Y N N N N ? ? ? -7.000 0.263 -1.824 O9 A1AGM 80 A1AGM O7 O7 O 0 1 N Y N N N N ? ? ? -6.720 2.717 -1.677 O7 A1AGM 81 A1AGM O8 O8 O 0 1 N Y N N N N ? ? ? -5.325 1.389 -2.977 O8 A1AGM 82 A1AGM H29 H29 H 0 1 N N N N N N ? ? ? -5.837 1.496 -3.790 H29 A1AGM 83 A1AGM H38 H38 H 0 1 N N N N N N 11.975 32.453 28.245 8.881 -3.696 -0.220 H38 A1AGM 84 A1AGM H40 H40 H 0 1 N N N N N N 10.067 30.257 28.489 8.121 -3.424 -2.382 H40 A1AGM 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGM O1 C1 DOUB N N 1 A1AGM C2 C1 SING N N 2 A1AGM C2 C3 SING N N 3 A1AGM C1 N4 SING N N 4 A1AGM O3 C16 DOUB N N 5 A1AGM N4 C20 SING N N 6 A1AGM N4 C4 SING N N 7 A1AGM C3 C4 SING N N 8 A1AGM C16 N3 SING N N 9 A1AGM C16 C15 SING N N 10 A1AGM C5 C4 SING N N 11 A1AGM C5 O2 SING N N 12 A1AGM N3 C17 SING N N 13 A1AGM C20 C21 SING N N 14 A1AGM O6 C6 DOUB N N 15 A1AGM C27 C26 SING N N 16 A1AGM C27 C23 SING N N 17 A1AGM O2 C6 SING N N 18 A1AGM C6 N1 SING N N 19 A1AGM C15 C14 SING N N 20 A1AGM C15 C18 SING N N 21 A1AGM C17 C18 SING N N 22 A1AGM C26 C21 SING N N 23 A1AGM C26 C25 SING N N 24 A1AGM C14 C13 SING N N 25 A1AGM C21 C22 SING N N 26 A1AGM C11 C9 SING N N 27 A1AGM C22 C23 SING N N 28 A1AGM N1 C7 SING N N 29 A1AGM C23 C24 SING N N 30 A1AGM C7 C12 SING N N 31 A1AGM C7 C8 SING N N 32 A1AGM N2 C13 SING N N 33 A1AGM N2 C12 SING N N 34 A1AGM C13 C19 SING N N 35 A1AGM C12 O5 DOUB N N 36 A1AGM C9 C8 SING N N 37 A1AGM C9 C10 SING N N 38 A1AGM C25 C24 SING N N 39 A1AGM C19 O4 SING N N 40 A1AGM N1 H1 SING N N 41 A1AGM N2 H2 SING N N 42 A1AGM C2 H3 SING N N 43 A1AGM C2 H4 SING N N 44 A1AGM C3 H5 SING N N 45 A1AGM C3 H6 SING N N 46 A1AGM C4 H7 SING N N 47 A1AGM C5 H8 SING N N 48 A1AGM C5 H9 SING N N 49 A1AGM C7 H10 SING N N 50 A1AGM N3 H11 SING N N 51 A1AGM C8 H12 SING N N 52 A1AGM C8 H13 SING N N 53 A1AGM C10 H14 SING N N 54 A1AGM C10 H15 SING N N 55 A1AGM C10 H16 SING N N 56 A1AGM C11 H17 SING N N 57 A1AGM C11 H18 SING N N 58 A1AGM C11 H19 SING N N 59 A1AGM C13 H20 SING N N 60 A1AGM C14 H21 SING N N 61 A1AGM C14 H22 SING N N 62 A1AGM C9 H23 SING N N 63 A1AGM C15 H24 SING N N 64 A1AGM C17 H25 SING N N 65 A1AGM C17 H26 SING N N 66 A1AGM C18 H27 SING N N 67 A1AGM C18 H28 SING N N 68 A1AGM C19 S1 SING N N 69 A1AGM C19 H30 SING N N 70 A1AGM C20 H31 SING N N 71 A1AGM C20 H32 SING N N 72 A1AGM C21 H33 SING N N 73 A1AGM C22 H34 SING N N 74 A1AGM C22 H35 SING N N 75 A1AGM C23 H36 SING N N 76 A1AGM C24 H37 SING N N 77 A1AGM C25 H39 SING N N 78 A1AGM C26 H41 SING N N 79 A1AGM C27 H42 SING N N 80 A1AGM C27 H43 SING N N 81 A1AGM O4 H44 SING N N 82 A1AGM S1 O9 DOUB N N 83 A1AGM S1 O7 DOUB N N 84 A1AGM S1 O8 SING N N 85 A1AGM O8 H29 SING N N 86 A1AGM C24 H38 SING N N 87 A1AGM C25 H40 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGM SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CC2CC1CC2)C(O)S(=O)(=O)O" A1AGM InChI InChI 1.06 "InChI=1S/C27H44N4O9S/c1-15(2)9-21(25(34)29-22(26(35)41(37,38)39)12-18-7-8-28-24(18)33)30-27(36)40-14-20-5-6-23(32)31(20)13-19-11-16-3-4-17(19)10-16/h15-22,26,35H,3-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t16-,17+,18+,19-,20+,21+,22+,26-/m1/s1" A1AGM InChIKey InChI 1.06 RCEGRHOAYJTPPY-AQOOIRESSA-N A1AGM SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1C[C@H]2C[C@@H]3CC[C@H]2C3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](O)[S](O)(=O)=O" A1AGM SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1C[CH]2C[CH]3CC[CH]2C3)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" A1AGM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2C[C@H]3C[C@@H]4CC[C@H]3C4" A1AGM SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CC4CCC3C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGM "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-{[N-({[(2S)-1-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[[(1~{S},2~{S},4~{R})-2-bicyclo[2.2.1]heptanyl]methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGM "Create component" 2024-02-29 RCSB A1AGM "Modify linking type" 2024-02-29 RCSB A1AGM "Initial release" 2024-07-10 RCSB A1AGM "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGM _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #