data_A1AGN # _chem_comp.id A1AGN _chem_comp.name "(1S,2S)-2-{[N-({[(2S)-1-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H44 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 600.725 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AT4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGN N1 N1 N 0 1 N N N N N N 11.831 23.499 26.920 1.057 -1.158 -0.086 N1 A1AGN 1 A1AGN C2 C1 C 0 1 N N N N N N 8.245 27.764 23.419 6.604 -1.795 1.609 C2 A1AGN 2 A1AGN C3 C2 C 0 1 N N N N N N 7.796 27.406 24.817 5.781 -2.490 0.499 C3 A1AGN 3 A1AGN N4 N2 N 0 1 N N N N N N 10.085 27.841 24.817 5.975 -0.138 0.075 N4 A1AGN 4 A1AGN C5 C3 C 0 1 N N N N N N 9.472 25.553 25.279 4.453 -1.428 -1.364 C5 A1AGN 5 A1AGN C6 C4 C 0 1 N N N N N N 10.878 23.860 26.044 2.114 -1.281 -0.914 C6 A1AGN 6 A1AGN C7 C5 C 0 1 N N S N N N 12.038 22.083 27.183 -0.303 -1.146 -0.631 C7 A1AGN 7 A1AGN C8 C6 C 0 1 N N N N N N 13.205 21.837 28.137 -0.792 -2.584 -0.813 C8 A1AGN 8 A1AGN C9 C7 C 0 1 N N N N N N 14.540 22.390 27.665 0.062 -3.283 -1.873 C9 A1AGN 9 A1AGN C10 C8 C 0 1 N N N N N N 15.615 22.212 28.734 -0.344 -4.755 -1.966 C10 A1AGN 10 A1AGN C11 C9 C 0 1 N N N N N N 14.973 21.796 26.341 -0.153 -2.608 -3.228 C11 A1AGN 11 A1AGN C12 C10 C 0 1 N N N N N N 10.755 21.530 27.797 -1.219 -0.421 0.321 C12 A1AGN 12 A1AGN C13 C11 C 0 1 N N S N N N 9.003 19.795 27.661 -3.417 0.420 0.951 C13 A1AGN 13 A1AGN C14 C12 C 0 1 N N N N N N 8.032 19.684 26.480 -4.584 1.030 0.171 C14 A1AGN 14 A1AGN C15 C13 C 0 1 N N S N N N 7.517 21.036 25.970 -4.055 2.106 -0.779 C15 A1AGN 15 A1AGN C16 C14 C 0 1 N N N N N N 6.628 20.907 24.740 -5.189 2.710 -1.578 C16 A1AGN 16 A1AGN C21 C15 C 0 1 N N S N N N 11.415 29.073 26.512 4.242 1.559 -0.237 C21 A1AGN 17 A1AGN C20 C16 C 0 1 N N N N N N 11.419 28.084 25.363 5.694 1.170 -0.522 C20 A1AGN 18 A1AGN C18 C17 C 0 1 N N N N N N 6.653 21.817 26.968 -3.477 3.297 0.019 C18 A1AGN 19 A1AGN C17 C18 C 0 1 N N N N N N 5.605 22.509 26.105 -3.890 4.497 -0.862 C17 A1AGN 20 A1AGN C23 C19 C 0 1 N N R N N N 12.679 31.101 26.739 3.590 3.285 1.387 C23 A1AGN 21 A1AGN C1 C20 C 0 1 N N N N N N 9.636 28.298 23.624 6.438 -0.319 1.323 C1 A1AGN 22 A1AGN C4 C21 C 0 1 N N S N N N 9.094 27.004 25.521 5.787 -1.420 -0.615 C4 A1AGN 23 A1AGN C19 C22 C 0 1 N N S N N N 9.238 18.440 28.297 -3.957 -0.565 1.990 C19 A1AGN 24 A1AGN C22 C23 C 0 1 N N N N N N 12.832 29.622 26.771 4.034 1.794 1.277 C22 A1AGN 25 A1AGN C24 C24 C 0 1 N N N N N N 11.871 31.531 27.961 2.152 3.309 0.783 C24 A1AGN 26 A1AGN C25 C25 C 0 1 N N N N N N 10.434 31.101 27.611 2.360 3.074 -0.730 C25 A1AGN 27 A1AGN C26 C26 C 0 1 N N S N N N 10.600 30.354 26.283 3.903 2.929 -0.899 C26 A1AGN 28 A1AGN C27 C27 C 0 1 N N N N N N 11.670 31.265 25.634 4.410 3.920 0.209 C27 A1AGN 29 A1AGN N2 N3 N 0 1 N N N N N N 10.265 20.408 27.246 -2.527 -0.285 0.026 N2 A1AGN 30 A1AGN N3 N4 N 0 1 N N N N N N 5.569 21.697 24.897 -5.075 4.049 -1.603 N3 A1AGN 31 A1AGN O1 O1 O 0 1 N N N N N N 10.290 28.996 22.849 6.687 0.572 2.108 O1 A1AGN 32 A1AGN O2 O2 O 0 1 N N N N N N 10.620 25.183 26.086 3.364 -1.292 -0.414 O2 A1AGN 33 A1AGN O3 O3 O 0 1 N N N N N N 6.862 20.196 23.753 -6.072 2.078 -2.118 O3 A1AGN 34 A1AGN O4 O4 O 0 1 N N N N N N 8.050 17.863 28.834 -4.914 0.095 2.820 O4 A1AGN 35 A1AGN O5 O5 O 0 1 N N N N N N 10.204 22.116 28.736 -0.779 0.041 1.353 O5 A1AGN 36 A1AGN O6 O6 O 0 1 N N N N N N 10.327 23.117 25.263 1.938 -1.382 -2.112 O6 A1AGN 37 A1AGN H1 H1 H 0 1 N N N N N N 12.387 24.190 27.382 1.197 -1.082 0.870 H1 A1AGN 38 A1AGN H2 H2 H 0 1 N N N N N N 7.590 28.531 22.980 6.203 -2.041 2.592 H2 A1AGN 39 A1AGN H3 H3 H 0 1 N N N N N N 8.256 26.876 22.770 7.653 -2.082 1.541 H3 A1AGN 40 A1AGN H4 H4 H 0 1 N N N N N N 7.332 28.271 25.314 6.271 -3.405 0.165 H4 A1AGN 41 A1AGN H5 H5 H 0 1 N N N N N N 7.084 26.568 24.798 4.765 -2.696 0.837 H5 A1AGN 42 A1AGN H6 H6 H 0 1 N N N N N N 8.621 24.909 25.544 4.427 -0.596 -2.068 H6 A1AGN 43 A1AGN H7 H7 H 0 1 N N N N N N 9.718 25.416 24.216 4.347 -2.367 -1.907 H7 A1AGN 44 A1AGN H8 H8 H 0 1 N N N N N N 12.235 21.555 26.239 -0.304 -0.637 -1.595 H8 A1AGN 45 A1AGN H9 H9 H 0 1 N N N N N N 12.963 22.305 29.102 -0.707 -3.119 0.133 H9 A1AGN 46 A1AGN H10 H10 H 0 1 N N N N N N 13.313 20.751 28.273 -1.834 -2.576 -1.134 H10 A1AGN 47 A1AGN H11 H11 H 0 1 N N N N N N 14.410 23.471 27.512 1.114 -3.214 -1.595 H11 A1AGN 48 A1AGN H12 H12 H 0 1 N N N N N N 15.269 22.654 29.680 -1.396 -4.825 -2.243 H12 A1AGN 49 A1AGN H13 H13 H 0 1 N N N N N N 15.812 21.140 28.880 0.264 -5.253 -2.721 H13 A1AGN 50 A1AGN H14 H14 H 0 1 N N N N N N 16.539 22.714 28.412 -0.191 -5.237 -1.000 H14 A1AGN 51 A1AGN H15 H15 H 0 1 N N N N N N 15.941 22.227 26.044 -1.205 -2.677 -3.506 H15 A1AGN 52 A1AGN H16 H16 H 0 1 N N N N N N 15.073 20.705 26.444 0.137 -1.559 -3.162 H16 A1AGN 53 A1AGN H17 H17 H 0 1 N N N N N N 14.219 22.024 25.573 0.455 -3.106 -3.983 H17 A1AGN 54 A1AGN H18 H18 H 0 1 N N N N N N 8.534 20.443 28.416 -2.864 1.212 1.455 H18 A1AGN 55 A1AGN H19 H19 H 0 1 N N N N N N 7.168 19.082 26.797 -5.083 0.250 -0.404 H19 A1AGN 56 A1AGN H20 H20 H 0 1 N N N N N N 8.549 19.176 25.653 -5.292 1.477 0.868 H20 A1AGN 57 A1AGN H21 H21 H 0 1 N N N N N N 8.385 21.658 25.706 -3.298 1.689 -1.443 H21 A1AGN 58 A1AGN H22 H22 H 0 1 N N N N N N 11.052 28.573 27.422 3.564 0.785 -0.597 H22 A1AGN 59 A1AGN H23 H23 H 0 1 N N N N N N 11.830 27.129 25.723 6.361 1.916 -0.091 H23 A1AGN 60 A1AGN H24 H24 H 0 1 N N N N N N 12.060 28.480 24.561 5.852 1.120 -1.599 H24 A1AGN 61 A1AGN H25 H25 H 0 1 N N N N N N 6.176 21.134 27.687 -3.934 3.363 1.007 H25 A1AGN 62 A1AGN H26 H26 H 0 1 N N N N N N 7.259 22.557 27.512 -2.393 3.225 0.098 H26 A1AGN 63 A1AGN H27 H27 H 0 1 N N N N N N 5.905 23.542 25.875 -4.138 5.355 -0.238 H27 A1AGN 64 A1AGN H28 H28 H 0 1 N N N N N N 4.625 22.514 26.605 -3.086 4.753 -1.552 H28 A1AGN 65 A1AGN H29 H29 H 0 1 N N N N N N 13.614 31.662 26.594 3.702 3.744 2.369 H29 A1AGN 66 A1AGN H30 H30 H 0 1 N N N N N N 9.051 27.233 26.596 6.610 -1.601 -1.307 H30 A1AGN 67 A1AGN H31 H31 H 0 1 N N N N N N 9.952 18.588 29.121 -3.135 -0.932 2.604 H31 A1AGN 68 A1AGN S1 S1 S 0 1 N Y N N N N 9.580 17.786 27.522 -4.750 -1.960 1.144 S1 A1AGN 69 A1AGN H33 H33 H 0 1 N N N N N N 13.202 29.292 27.753 3.254 1.136 1.660 H33 A1AGN 70 A1AGN H34 H34 H 0 1 N N N N N N 13.526 29.287 25.986 4.967 1.635 1.818 H34 A1AGN 71 A1AGN H35 H35 H 0 1 N N N N N N 12.225 31.018 28.867 1.546 2.511 1.212 H35 A1AGN 72 A1AGN H37 H37 H 0 1 N N N N N N 9.779 31.977 27.491 1.856 2.160 -1.045 H37 A1AGN 73 A1AGN H39 H39 H 0 1 N N N N N N 9.678 30.226 25.696 4.289 3.079 -1.907 H39 A1AGN 74 A1AGN H40 H40 H 0 1 N N N N N N 12.028 30.882 24.667 4.108 4.947 0.007 H40 A1AGN 75 A1AGN H41 H41 H 0 1 N N N N N N 11.331 32.305 25.514 5.485 3.838 0.369 H41 A1AGN 76 A1AGN H42 H42 H 0 1 N N N N N N 10.789 19.969 26.516 -2.878 -0.654 -0.799 H42 A1AGN 77 A1AGN H43 H43 H 0 1 N N N N N N 4.814 21.730 24.242 -5.695 4.643 -2.054 H43 A1AGN 78 A1AGN H44 H44 H 0 1 N N N N N N 8.253 17.018 29.219 -5.675 0.449 2.339 H44 A1AGN 79 A1AGN O7 O7 O 0 1 N Y N N N N ? ? ? -5.875 -1.517 0.397 O7 A1AGN 80 A1AGN O9 O9 O 0 1 N Y N N N N ? ? ? -3.773 -2.811 0.562 O9 A1AGN 81 A1AGN O8 O8 O 0 1 N Y N N N N ? ? ? -5.351 -2.793 2.268 O8 A1AGN 82 A1AGN H32 H32 H 0 1 N N N N N N ? ? ? -5.815 -3.585 1.965 H32 A1AGN 83 A1AGN H36 H36 H 0 1 N N N N N N 11.931 32.619 28.109 1.683 4.277 0.958 H36 A1AGN 84 A1AGN H38 H38 H 0 1 N N N N N N 10.022 30.439 28.386 1.992 3.926 -1.301 H38 A1AGN 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGN O1 C1 DOUB N N 1 A1AGN C2 C1 SING N N 2 A1AGN C2 C3 SING N N 3 A1AGN C1 N4 SING N N 4 A1AGN O3 C16 DOUB N N 5 A1AGN C16 N3 SING N N 6 A1AGN C16 C15 SING N N 7 A1AGN C3 C4 SING N N 8 A1AGN N4 C20 SING N N 9 A1AGN N4 C4 SING N N 10 A1AGN N3 C17 SING N N 11 A1AGN O6 C6 DOUB N N 12 A1AGN C5 C4 SING N N 13 A1AGN C5 O2 SING N N 14 A1AGN C20 C21 SING N N 15 A1AGN C27 C26 SING N N 16 A1AGN C27 C23 SING N N 17 A1AGN C15 C14 SING N N 18 A1AGN C15 C18 SING N N 19 A1AGN C6 O2 SING N N 20 A1AGN C6 N1 SING N N 21 A1AGN C17 C18 SING N N 22 A1AGN C26 C21 SING N N 23 A1AGN C26 C25 SING N N 24 A1AGN C11 C9 SING N N 25 A1AGN C14 C13 SING N N 26 A1AGN C21 C22 SING N N 27 A1AGN C23 C22 SING N N 28 A1AGN C23 C24 SING N N 29 A1AGN N1 C7 SING N N 30 A1AGN C7 C12 SING N N 31 A1AGN C7 C8 SING N N 32 A1AGN N2 C13 SING N N 33 A1AGN N2 C12 SING N N 34 A1AGN C25 C24 SING N N 35 A1AGN C13 C19 SING N N 36 A1AGN C9 C8 SING N N 37 A1AGN C9 C10 SING N N 38 A1AGN C12 O5 DOUB N N 39 A1AGN C19 O4 SING N N 40 A1AGN N1 H1 SING N N 41 A1AGN C2 H2 SING N N 42 A1AGN C2 H3 SING N N 43 A1AGN C3 H4 SING N N 44 A1AGN C3 H5 SING N N 45 A1AGN C5 H6 SING N N 46 A1AGN C5 H7 SING N N 47 A1AGN C7 H8 SING N N 48 A1AGN C8 H9 SING N N 49 A1AGN C8 H10 SING N N 50 A1AGN C9 H11 SING N N 51 A1AGN C10 H12 SING N N 52 A1AGN C10 H13 SING N N 53 A1AGN C10 H14 SING N N 54 A1AGN C11 H15 SING N N 55 A1AGN C11 H16 SING N N 56 A1AGN C11 H17 SING N N 57 A1AGN C13 H18 SING N N 58 A1AGN C14 H19 SING N N 59 A1AGN C14 H20 SING N N 60 A1AGN C15 H21 SING N N 61 A1AGN C21 H22 SING N N 62 A1AGN C20 H23 SING N N 63 A1AGN C20 H24 SING N N 64 A1AGN C18 H25 SING N N 65 A1AGN C18 H26 SING N N 66 A1AGN C17 H27 SING N N 67 A1AGN C17 H28 SING N N 68 A1AGN C23 H29 SING N N 69 A1AGN C4 H30 SING N N 70 A1AGN C19 H31 SING N N 71 A1AGN C19 S1 SING N N 72 A1AGN C22 H33 SING N N 73 A1AGN C22 H34 SING N N 74 A1AGN C24 H35 SING N N 75 A1AGN C25 H37 SING N N 76 A1AGN C26 H39 SING N N 77 A1AGN C27 H40 SING N N 78 A1AGN C27 H41 SING N N 79 A1AGN N2 H42 SING N N 80 A1AGN N3 H43 SING N N 81 A1AGN O4 H44 SING N N 82 A1AGN S1 O7 DOUB N N 83 A1AGN S1 O9 DOUB N N 84 A1AGN S1 O8 SING N N 85 A1AGN O8 H32 SING N N 86 A1AGN C24 H36 SING N N 87 A1AGN C25 H38 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGN SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CC2CC1CC2)C(O)S(=O)(=O)O" A1AGN InChI InChI 1.06 "InChI=1S/C27H44N4O9S/c1-15(2)9-21(25(34)29-22(26(35)41(37,38)39)12-18-7-8-28-24(18)33)30-27(36)40-14-20-5-6-23(32)31(20)13-19-11-16-3-4-17(19)10-16/h15-22,26,35H,3-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t16-,17+,18+,19-,20+,21+,22+,26+/m1/s1" A1AGN InChIKey InChI 1.06 RCEGRHOAYJTPPY-XTXIHYAPSA-N A1AGN SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1C[C@H]2C[C@@H]3CC[C@H]2C3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@@H](O)[S](O)(=O)=O" A1AGN SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1C[CH]2C[CH]3CC[CH]2C3)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" A1AGN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2C[C@H]3C[C@@H]4CC[C@H]3C4" A1AGN SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CC4CCC3C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGN "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-{[N-({[(2S)-1-{[(1S,2S,4R)-bicyclo[2.2.1]heptan-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[[(1~{S},2~{S},4~{R})-2-bicyclo[2.2.1]heptanyl]methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGN "Create component" 2024-02-29 RCSB A1AGN "Modify linking type" 2024-02-29 RCSB A1AGN "Initial release" 2024-07-10 RCSB A1AGN "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGN _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #