data_A1AGO # _chem_comp.id A1AGO _chem_comp.name "(1R,2S)-2-({N-[({(2S)-1-[(4,4-difluorocyclohexyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H42 F2 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 624.695 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGO C2 C1 C 0 1 N N N N N N -23.450 -10.585 4.639 -6.464 2.007 1.597 C2 A1AGO 1 A1AGO C4 C2 C 0 1 N N S N N N -22.819 -9.762 2.483 -5.636 1.755 -0.640 C4 A1AGO 2 A1AGO C5 C3 C 0 1 N N N N N N -21.686 -8.764 2.619 -4.293 1.753 -1.373 C5 A1AGO 3 A1AGO C6 C4 C 0 1 N N N N N N -21.389 -6.453 2.400 -1.964 1.533 -0.902 C6 A1AGO 4 A1AGO C7 C5 C 0 1 N N S N N N -20.993 -4.130 1.836 0.444 1.328 -0.596 C7 A1AGO 5 A1AGO C8 C6 C 0 1 N N N N N N -21.159 -3.165 0.670 0.974 2.758 -0.719 C8 A1AGO 6 A1AGO C12 C7 C 0 1 N N N N N N -21.593 -3.549 3.117 1.329 0.543 0.338 C12 A1AGO 7 A1AGO C15 C8 C 0 1 N N S N N N -20.991 -4.729 6.530 3.938 -2.130 -0.766 C15 A1AGO 8 A1AGO C17 C9 C 0 1 N N N N N N -22.600 -6.126 7.636 3.552 -4.497 -0.804 C17 A1AGO 9 A1AGO C18 C10 C 0 1 N N N N N N -22.491 -4.853 6.810 3.270 -3.251 0.064 C18 A1AGO 10 A1AGO C21 C11 C 0 1 N N N N N N -22.262 -12.805 0.866 -4.235 -1.317 -0.457 C21 A1AGO 11 A1AGO C24 C12 C 0 1 N N N N N N -23.443 -13.948 -1.542 -2.364 -3.364 0.490 C24 A1AGO 12 A1AGO N1 N1 N 0 1 N N N N N N -21.595 -5.420 1.571 -0.921 1.356 -0.067 N1 A1AGO 13 A1AGO N3 N2 N 0 1 N N N N N N -21.289 -6.227 8.265 4.756 -4.172 -1.577 N3 A1AGO 14 A1AGO C9 C13 C 0 1 N N N N N N -20.431 -3.568 -0.607 0.152 3.519 -1.761 C9 A1AGO 15 A1AGO C10 C14 C 0 1 N N N N N N -18.928 -3.535 -0.421 0.598 4.981 -1.795 C10 A1AGO 16 A1AGO C13 C15 C 0 1 N N S N N N -21.108 -2.514 5.292 3.496 -0.380 0.961 C13 A1AGO 17 A1AGO C14 C16 C 0 1 N N N N N N -20.463 -3.298 6.435 4.584 -1.093 0.155 C14 A1AGO 18 A1AGO C22 C17 C 0 1 N N N N N N -21.397 -13.378 -0.247 -3.955 -2.582 -1.271 C22 A1AGO 19 A1AGO C25 C18 C 0 1 N N N N N N -24.313 -13.325 -0.499 -2.644 -2.099 1.304 C25 A1AGO 20 A1AGO C1 C19 C 0 1 N N N N N N -22.777 -11.675 3.852 -6.362 0.548 1.211 C1 A1AGO 21 A1AGO O2 O1 O 0 1 N N N N N N -22.109 -7.521 2.014 -3.219 1.559 -0.416 O2 A1AGO 22 A1AGO C3 C20 C 0 1 N N N N N N -23.865 -9.586 3.585 -5.596 2.741 0.548 C3 A1AGO 23 A1AGO O6 O2 O 0 1 N N N N N N -20.683 -6.432 3.393 -1.772 1.668 -2.094 O6 A1AGO 24 A1AGO C11 C21 C 0 1 N N N N N N -20.841 -2.664 -1.752 0.366 2.888 -3.139 C11 A1AGO 25 A1AGO C16 C22 C 0 1 N N N N N N -20.350 -5.506 7.665 4.994 -2.849 -1.577 C16 A1AGO 26 A1AGO C19 C23 C 0 1 N N R N N N -20.758 -1.048 5.353 4.148 0.572 1.966 C19 A1AGO 27 A1AGO C20 C24 C 0 1 N N N N N N -21.516 -11.762 1.684 -5.663 -0.842 -0.728 C20 A1AGO 28 A1AGO C23 C25 C 0 1 N N N N N N -22.142 -14.467 -1.020 -2.526 -3.057 -1.000 C23 A1AGO 29 A1AGO C26 C26 C 0 1 N N N N N N -23.546 -12.248 0.272 -4.073 -1.624 1.033 C26 A1AGO 30 A1AGO F1 F1 F 0 1 N N N N N N -23.202 -13.028 -2.545 -3.267 -4.366 0.861 F1 A1AGO 31 A1AGO F2 F2 F 0 1 N N N N N N -24.132 -14.972 -2.165 -1.058 -3.798 0.738 F2 A1AGO 32 A1AGO N2 N3 N 0 1 N N N N N N -20.710 -3.092 4.009 2.636 0.383 0.053 N2 A1AGO 33 A1AGO N4 N4 N 0 1 N N N N N N -22.357 -11.138 2.693 -5.892 0.433 -0.043 N4 A1AGO 34 A1AGO O1 O3 O 0 1 N N N N N N -22.579 -12.831 4.222 -6.661 -0.383 1.929 O1 A1AGO 35 A1AGO O3 O4 O 0 1 N N N N N N -19.152 -5.470 7.952 5.919 -2.309 -2.145 O3 A1AGO 36 A1AGO O4 O5 O 0 1 N N N N N N -21.480 -0.277 4.407 3.140 1.151 2.797 O4 A1AGO 37 A1AGO O5 O6 O 0 1 N N N N N N -22.820 -3.509 3.297 0.864 0.056 1.347 O5 A1AGO 38 A1AGO H1 H1 H 0 1 N N N N N N -22.751 -10.131 5.357 -7.499 2.345 1.540 H1 A1AGO 39 A1AGO H2 H2 H 0 1 N N N N N N -24.327 -10.974 5.177 -6.067 2.165 2.599 H2 A1AGO 40 A1AGO H3 H3 H 0 1 N N N N N N -23.295 -9.658 1.497 -6.440 2.021 -1.326 H3 A1AGO 41 A1AGO H4 H4 H 0 1 N N N N N N -20.791 -9.144 2.105 -4.279 0.944 -2.104 H4 A1AGO 42 A1AGO H5 H5 H 0 1 N N N N N N -21.457 -8.602 3.683 -4.157 2.707 -1.884 H5 A1AGO 43 A1AGO H6 H6 H 0 1 N N N N N N -19.915 -4.271 2.005 0.444 0.855 -1.578 H6 A1AGO 44 A1AGO H7 H7 H 0 1 N N N N N N -20.779 -2.182 0.984 0.892 3.260 0.245 H7 A1AGO 45 A1AGO H8 H8 H 0 1 N N N N N N -22.232 -3.087 0.441 2.019 2.733 -1.028 H8 A1AGO 46 A1AGO H9 H9 H 0 1 N N N N N N -20.770 -5.245 5.584 3.209 -1.656 -1.423 H9 A1AGO 47 A1AGO H10 H10 H 0 1 N N N N N N -23.395 -6.039 8.392 3.733 -5.365 -0.170 H10 A1AGO 48 A1AGO H11 H11 H 0 1 N N N N N N -22.798 -6.997 6.994 2.714 -4.688 -1.474 H11 A1AGO 49 A1AGO H12 H12 H 0 1 N N N N N N -22.857 -3.985 7.377 3.740 -3.343 1.044 H12 A1AGO 50 A1AGO H13 H13 H 0 1 N N N N N N -23.059 -4.944 5.872 2.198 -3.077 0.163 H13 A1AGO 51 A1AGO H14 H14 H 0 1 N N N N N N -22.533 -13.631 1.540 -3.531 -0.536 -0.746 H14 A1AGO 52 A1AGO H15 H15 H 0 1 N N N N N N -22.170 -5.541 0.762 -1.075 1.248 0.885 H15 A1AGO 53 A1AGO H16 H16 H 0 1 N N N N N N -21.113 -6.788 9.074 5.310 -4.827 -2.029 H16 A1AGO 54 A1AGO H17 H17 H 0 1 N N N N N N -20.725 -4.598 -0.859 -0.905 3.467 -1.498 H17 A1AGO 55 A1AGO H18 H18 H 0 1 N N N N N N -18.647 -4.195 0.413 1.655 5.033 -2.058 H18 A1AGO 56 A1AGO H19 H19 H 0 1 N N N N N N -18.437 -3.879 -1.343 0.012 5.523 -2.537 H19 A1AGO 57 A1AGO H20 H20 H 0 1 N N N N N N -18.609 -2.506 -0.198 0.446 5.431 -0.814 H20 A1AGO 58 A1AGO H21 H21 H 0 1 N N N N N N -22.199 -2.607 5.395 2.897 -1.117 1.495 H21 A1AGO 59 A1AGO H22 H22 H 0 1 N N N N N N -19.376 -3.333 6.270 5.273 -1.592 0.836 H22 A1AGO 60 A1AGO H23 H23 H 0 1 N N N N N N -20.674 -2.780 7.382 5.129 -0.364 -0.444 H23 A1AGO 61 A1AGO H24 H24 H 0 1 N N N N N N -20.486 -13.809 0.193 -4.658 -3.363 -0.983 H24 A1AGO 62 A1AGO H25 H25 H 0 1 N N N N N N -21.122 -12.570 -0.941 -4.070 -2.363 -2.333 H25 A1AGO 63 A1AGO H26 H26 H 0 1 N N N N N N -25.188 -12.868 -0.984 -2.529 -2.317 2.366 H26 A1AGO 64 A1AGO H27 H27 H 0 1 N N N N N N -24.648 -14.102 0.203 -1.941 -1.318 1.016 H27 A1AGO 65 A1AGO H28 H28 H 0 1 N N N N N N -23.843 -8.562 3.986 -6.040 3.698 0.276 H28 A1AGO 66 A1AGO H29 H29 H 0 1 N N N N N N -24.873 -9.811 3.208 -4.577 2.874 0.911 H29 A1AGO 67 A1AGO H30 H30 H 0 1 N N N N N N -21.934 -2.699 -1.874 1.422 2.939 -3.402 H30 A1AGO 68 A1AGO H31 H31 H 0 1 N N N N N N -20.529 -1.632 -1.534 0.047 1.846 -3.115 H31 A1AGO 69 A1AGO H32 H32 H 0 1 N N N N N N -20.357 -3.005 -2.679 -0.220 3.430 -3.881 H32 A1AGO 70 A1AGO H33 H33 H 0 1 N N N N N N -21.023 -0.694 6.360 4.856 0.020 2.584 H33 A1AGO 71 A1AGO S1 S1 S 0 1 N Y N N N N -19.720 -0.959 5.110 5.024 1.886 1.073 S1 A1AGO 72 A1AGO H35 H35 H 0 1 N N N N N N -20.666 -12.249 2.185 -5.805 -0.709 -1.801 H35 A1AGO 73 A1AGO H36 H36 H 0 1 N N N N N N -21.143 -10.982 1.004 -6.370 -1.585 -0.358 H36 A1AGO 74 A1AGO H37 H37 H 0 1 N N N N N N -22.335 -15.318 -0.350 -1.822 -2.276 -1.288 H37 A1AGO 75 A1AGO H38 H38 H 0 1 N N N N N N -21.521 -14.800 -1.865 -2.326 -3.958 -1.580 H38 A1AGO 76 A1AGO H39 H39 H 0 1 N N N N N N -23.296 -11.425 -0.414 -4.273 -0.723 1.613 H39 A1AGO 77 A1AGO H40 H40 H 0 1 N N N N N N -24.182 -11.868 1.085 -4.777 -2.405 1.322 H40 A1AGO 78 A1AGO H41 H41 H 0 1 N N N N N N -19.736 -3.147 3.790 3.008 0.773 -0.754 H41 A1AGO 79 A1AGO H42 H42 H 0 1 N N N N N N -21.227 0.636 4.483 2.475 1.660 2.312 H42 A1AGO 80 A1AGO O7 O7 O 0 1 N Y N N N N ? ? ? 4.102 2.741 0.412 O7 A1AGO 81 A1AGO O9 O9 O 0 1 N Y N N N N ? ? ? 5.622 2.757 2.169 O9 A1AGO 82 A1AGO O8 O8 O 0 1 N Y N N N N ? ? ? 6.153 1.358 0.390 O8 A1AGO 83 A1AGO H34 H34 H 0 1 N N N N N N ? ? ? 6.128 3.512 1.840 H34 A1AGO 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGO F1 C24 SING N N 1 A1AGO F2 C24 SING N N 2 A1AGO C11 C9 SING N N 3 A1AGO C24 C23 SING N N 4 A1AGO C24 C25 SING N N 5 A1AGO C23 C22 SING N N 6 A1AGO C9 C10 SING N N 7 A1AGO C9 C8 SING N N 8 A1AGO C25 C26 SING N N 9 A1AGO C22 C21 SING N N 10 A1AGO C26 C21 SING N N 11 A1AGO C8 C7 SING N N 12 A1AGO C21 C20 SING N N 13 A1AGO N1 C7 SING N N 14 A1AGO N1 C6 SING N N 15 A1AGO C20 N4 SING N N 16 A1AGO C7 C12 SING N N 17 A1AGO O2 C6 SING N N 18 A1AGO O2 C5 SING N N 19 A1AGO C6 O6 DOUB N N 20 A1AGO C4 C5 SING N N 21 A1AGO C4 N4 SING N N 22 A1AGO C4 C3 SING N N 23 A1AGO N4 C1 SING N N 24 A1AGO C12 O5 DOUB N N 25 A1AGO C12 N2 SING N N 26 A1AGO C3 C2 SING N N 27 A1AGO C1 O1 DOUB N N 28 A1AGO C1 C2 SING N N 29 A1AGO N2 C13 SING N N 30 A1AGO O4 C19 SING N N 31 A1AGO C13 C19 SING N N 32 A1AGO C13 C14 SING N N 33 A1AGO C14 C15 SING N N 34 A1AGO C15 C18 SING N N 35 A1AGO C15 C16 SING N N 36 A1AGO C18 C17 SING N N 37 A1AGO C17 N3 SING N N 38 A1AGO C16 O3 DOUB N N 39 A1AGO C16 N3 SING N N 40 A1AGO C2 H1 SING N N 41 A1AGO C2 H2 SING N N 42 A1AGO C4 H3 SING N N 43 A1AGO C5 H4 SING N N 44 A1AGO C5 H5 SING N N 45 A1AGO C7 H6 SING N N 46 A1AGO C8 H7 SING N N 47 A1AGO C8 H8 SING N N 48 A1AGO C15 H9 SING N N 49 A1AGO C17 H10 SING N N 50 A1AGO C17 H11 SING N N 51 A1AGO C18 H12 SING N N 52 A1AGO C18 H13 SING N N 53 A1AGO C21 H14 SING N N 54 A1AGO N1 H15 SING N N 55 A1AGO N3 H16 SING N N 56 A1AGO C9 H17 SING N N 57 A1AGO C10 H18 SING N N 58 A1AGO C10 H19 SING N N 59 A1AGO C10 H20 SING N N 60 A1AGO C13 H21 SING N N 61 A1AGO C14 H22 SING N N 62 A1AGO C14 H23 SING N N 63 A1AGO C22 H24 SING N N 64 A1AGO C22 H25 SING N N 65 A1AGO C25 H26 SING N N 66 A1AGO C25 H27 SING N N 67 A1AGO C3 H28 SING N N 68 A1AGO C3 H29 SING N N 69 A1AGO C11 H30 SING N N 70 A1AGO C11 H31 SING N N 71 A1AGO C11 H32 SING N N 72 A1AGO C19 H33 SING N N 73 A1AGO C19 S1 SING N N 74 A1AGO C20 H35 SING N N 75 A1AGO C20 H36 SING N N 76 A1AGO C23 H37 SING N N 77 A1AGO C23 H38 SING N N 78 A1AGO C26 H39 SING N N 79 A1AGO C26 H40 SING N N 80 A1AGO N2 H41 SING N N 81 A1AGO O4 H42 SING N N 82 A1AGO S1 O7 DOUB N N 83 A1AGO S1 O9 SING N N 84 A1AGO S1 O8 DOUB N N 85 A1AGO O9 H34 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGO SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CCC(F)(F)CC1)C(O)S(=O)(=O)O" A1AGO InChI InChI 1.06 "InChI=1S/C26H42F2N4O9S/c1-15(2)11-19(23(35)30-20(24(36)42(38,39)40)12-17-7-10-29-22(17)34)31-25(37)41-14-18-3-4-21(33)32(18)13-16-5-8-26(27,28)9-6-16/h15-20,24,36H,3-14H2,1-2H3,(H,29,34)(H,30,35)(H,31,37)(H,38,39,40)/t17-,18-,19-,20-,24+/m0/s1" A1AGO InChIKey InChI 1.06 RHYSFFXFVGVALZ-JZBNULMRSA-N A1AGO SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1CC2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" A1AGO SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1CC2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2CC3CCC(CC3)(F)F" A1AGO SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CCC(CC3)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGO "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-({N-[({(2S)-1-[(4,4-difluorocyclohexyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[[4,4-bis(fluoranyl)cyclohexyl]methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGO "Create component" 2024-02-29 RCSB A1AGO "Initial release" 2024-07-10 RCSB A1AGO "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGO _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #