data_A1AGP # _chem_comp.id A1AGP _chem_comp.name "(1S,2S)-2-({N-[({(2S)-1-[(4,4-difluorocyclohexyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H42 F2 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 624.695 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGP C1 C1 C 0 1 N N N N N N -22.802 -11.760 3.881 4.349 0.893 -1.516 C1 A1AGP 1 A1AGP C2 C2 C 0 1 N N N N N N -23.468 -10.668 4.670 3.878 2.306 -1.781 C2 A1AGP 2 A1AGP C3 C3 C 0 1 N N N N N N -23.872 -9.659 3.622 4.372 3.107 -0.554 C3 A1AGP 3 A1AGP C4 C4 C 0 1 N N S N N N -22.839 -9.849 2.511 4.481 2.002 0.521 C4 A1AGP 4 A1AGP C5 C5 C 0 1 N N N N N N -21.697 -8.860 2.631 3.186 1.936 1.332 C5 A1AGP 5 A1AGP C6 C6 C 0 1 N N N N N N -21.332 -6.578 2.362 0.830 1.779 0.988 C6 A1AGP 6 A1AGP C8 C7 C 0 1 N N N N N N -21.125 -3.266 0.703 -2.069 3.184 0.916 C8 A1AGP 7 A1AGP C9 C8 C 0 1 N N N N N N -20.438 -3.636 -0.607 -3.421 3.231 1.632 C9 A1AGP 8 A1AGP C10 C9 C 0 1 N N N N N N -18.932 -3.616 -0.446 -3.244 2.785 3.085 C10 A1AGP 9 A1AGP C11 C10 C 0 1 N N N N N N -20.858 -2.713 -1.732 -3.965 4.661 1.600 C11 A1AGP 10 A1AGP C15 C11 C 0 1 N N S N N N -20.973 -4.762 6.523 -4.340 -2.204 1.311 C15 A1AGP 11 A1AGP C16 C12 C 0 1 N N N N N N -20.326 -5.575 7.631 -5.054 -3.168 2.233 C16 A1AGP 12 A1AGP C18 C13 C 0 1 N N N N N N -22.475 -4.903 6.795 -3.598 -3.118 0.309 C18 A1AGP 13 A1AGP C20 C14 C 0 1 N N N N N N -21.532 -11.847 1.718 5.176 -0.492 0.374 C20 A1AGP 14 A1AGP C21 C15 C 0 1 N N N N N N -22.274 -12.889 0.896 6.705 -0.468 0.406 C21 A1AGP 15 A1AGP C24 C16 C 0 1 N N N N N N -23.452 -14.028 -1.515 9.290 -1.661 -0.285 C24 A1AGP 16 A1AGP C25 C17 C 0 1 N N N N N N -24.323 -13.409 -0.470 8.750 -1.698 1.146 C25 A1AGP 17 A1AGP C26 C18 C 0 1 N N N N N N -23.559 -12.332 0.302 7.221 -1.723 1.114 C26 A1AGP 18 A1AGP O2 O1 O 0 1 N N N N N N -22.113 -7.617 2.024 2.053 1.845 0.429 O2 A1AGP 19 A1AGP O6 O2 O 0 1 N N N N N N -20.561 -6.585 3.303 0.712 1.796 2.197 O6 A1AGP 20 A1AGP C7 C19 C 0 1 N N S N N N -20.914 -4.270 1.824 -1.600 1.731 0.808 C7 A1AGP 21 A1AGP C12 C20 C 0 1 N N N N N N -21.515 -3.833 3.158 -2.562 0.956 -0.054 C12 A1AGP 22 A1AGP C14 C21 C 0 1 N N N N N N -20.473 -3.317 6.421 -5.349 -1.316 0.579 C14 A1AGP 23 A1AGP C17 C22 C 0 1 N N N N N N -22.582 -6.179 7.620 -3.442 -4.420 1.126 C17 A1AGP 24 A1AGP C19 C23 C 0 1 N N S N N N -20.791 -1.085 5.244 -5.613 0.530 -1.083 C19 A1AGP 25 A1AGP C23 C24 C 0 1 N N N N N N -22.149 -14.545 -0.995 8.775 -0.407 -0.992 C23 A1AGP 26 A1AGP C13 C25 C 0 1 N N S N N N -21.116 -2.573 5.249 -4.603 -0.345 -0.337 C13 A1AGP 27 A1AGP C22 C26 C 0 1 N N N N N N -21.407 -13.457 -0.218 7.245 -0.431 -1.025 C22 A1AGP 28 A1AGP F1 F1 F 0 1 N N N N N N -23.214 -13.104 -2.516 8.856 -2.798 -0.976 F1 A1AGP 29 A1AGP F2 F2 F 0 1 N N N N N N -24.140 -15.051 -2.140 10.689 -1.639 -0.255 F2 A1AGP 30 A1AGP N1 N1 N 0 1 N N N N N N -21.539 -5.545 1.539 -0.265 1.693 0.206 N1 A1AGP 31 A1AGP N2 N2 N 0 1 N N N N N N -20.695 -3.176 3.983 -3.720 0.504 0.466 N2 A1AGP 32 A1AGP N3 N3 N 0 1 N N N N N N -21.266 -6.291 8.235 -4.534 -4.401 2.105 N3 A1AGP 33 A1AGP N4 N4 N 0 1 N N N N N N -22.379 -11.225 2.724 4.680 0.751 -0.221 N4 A1AGP 34 A1AGP O1 O3 O 0 1 N N N N N N -22.606 -12.916 4.250 4.413 0.015 -2.350 O1 A1AGP 35 A1AGP O3 O4 O 0 1 N N N N N N -19.120 -5.578 7.889 -5.962 -2.870 2.980 O3 A1AGP 36 A1AGP O4 O5 O 0 1 N N N N N N -21.274 -0.419 6.410 -4.916 1.519 -1.843 O4 A1AGP 37 A1AGP O5 O6 O 0 1 N N N N N N -22.684 -4.123 3.447 -2.294 0.738 -1.217 O5 A1AGP 38 A1AGP H1 H1 H 0 1 N N N N N N -22.767 -10.223 5.392 4.327 2.693 -2.695 H1 A1AGP 39 A1AGP H2 H2 H 0 1 N N N N N N -24.350 -11.052 5.204 2.790 2.340 -1.847 H2 A1AGP 40 A1AGP H3 H3 H 0 1 N N N N N N -23.829 -8.637 4.026 5.345 3.558 -0.749 H3 A1AGP 41 A1AGP H4 H4 H 0 1 N N N N N N -24.887 -9.864 3.252 3.644 3.864 -0.263 H4 A1AGP 42 A1AGP H5 H5 H 0 1 N N N N N N -23.324 -9.748 1.529 5.329 2.189 1.179 H5 A1AGP 43 A1AGP H6 H6 H 0 1 N N N N N N -20.810 -9.250 2.111 3.207 1.059 1.979 H6 A1AGP 44 A1AGP H7 H7 H 0 1 N N N N N N -21.457 -8.695 3.692 3.093 2.835 1.943 H7 A1AGP 45 A1AGP H8 H8 H 0 1 N N N N N N -20.734 -2.292 1.034 -2.172 3.608 -0.082 H8 A1AGP 46 A1AGP H9 H9 H 0 1 N N N N N N -22.205 -3.182 0.514 -1.338 3.760 1.483 H9 A1AGP 47 A1AGP H10 H10 H 0 1 N N N N N N -20.741 -4.660 -0.873 -4.121 2.564 1.130 H10 A1AGP 48 A1AGP H11 H11 H 0 1 N N N N N N -18.641 -4.290 0.373 -4.214 2.773 3.582 H11 A1AGP 49 A1AGP H12 H12 H 0 1 N N N N N N -18.459 -3.951 -1.381 -2.812 1.785 3.108 H12 A1AGP 50 A1AGP H13 H13 H 0 1 N N N N N N -18.602 -2.593 -0.214 -2.581 3.479 3.601 H13 A1AGP 51 A1AGP H14 H14 H 0 1 N N N N N N -21.953 -2.737 -1.838 -3.264 5.327 2.103 H14 A1AGP 52 A1AGP H15 H15 H 0 1 N N N N N N -20.534 -1.687 -1.504 -4.090 4.978 0.565 H15 A1AGP 53 A1AGP H16 H16 H 0 1 N N N N N N -20.392 -3.044 -2.671 -4.928 4.694 2.110 H16 A1AGP 54 A1AGP H17 H17 H 0 1 N N N N N N -20.757 -5.260 5.567 -3.630 -1.595 1.870 H17 A1AGP 55 A1AGP H18 H18 H 0 1 N N N N N N -22.853 -4.039 7.361 -4.199 -3.288 -0.584 H18 A1AGP 56 A1AGP H19 H19 H 0 1 N N N N N N -23.036 -4.998 5.853 -2.624 -2.702 0.048 H19 A1AGP 57 A1AGP H20 H20 H 0 1 N N N N N N -20.684 -12.334 2.222 4.839 -1.340 -0.222 H20 A1AGP 58 A1AGP H21 H21 H 0 1 N N N N N N -21.156 -11.066 1.041 4.793 -0.587 1.390 H21 A1AGP 59 A1AGP H22 H22 H 0 1 N N N N N N -22.545 -13.717 1.567 7.043 0.418 0.945 H22 A1AGP 60 A1AGP H23 H23 H 0 1 N N N N N N -25.199 -12.953 -0.954 9.117 -2.592 1.650 H23 A1AGP 61 A1AGP H24 H24 H 0 1 N N N N N N -24.655 -14.189 0.231 9.088 -0.813 1.685 H24 A1AGP 62 A1AGP H25 H25 H 0 1 N N N N N N -23.310 -11.508 -0.383 6.836 -1.749 2.134 H25 A1AGP 63 A1AGP H26 H26 H 0 1 N N N N N N -24.196 -11.953 1.115 6.883 -2.608 0.576 H26 A1AGP 64 A1AGP H27 H27 H 0 1 N N N N N N -19.832 -4.416 1.962 -1.563 1.286 1.802 H27 A1AGP 65 A1AGP H28 H28 H 0 1 N N N N N N -19.382 -3.327 6.280 -6.016 -1.939 -0.017 H28 A1AGP 66 A1AGP H29 H29 H 0 1 N N N N N N -20.718 -2.789 7.355 -5.933 -0.754 1.308 H29 A1AGP 67 A1AGP H30 H30 H 0 1 N N N N N N -23.368 -6.089 8.384 -3.535 -5.288 0.474 H30 A1AGP 68 A1AGP H31 H31 H 0 1 N N N N N N -22.792 -7.047 6.978 -2.478 -4.432 1.636 H31 A1AGP 69 A1AGP H32 H32 H 0 1 N N N N N N -21.292 -0.649 4.367 -6.269 1.021 -0.364 H32 A1AGP 70 A1AGP S1 S1 S 0 1 N Y N N N N -19.725 -0.991 5.241 -6.602 -0.503 -2.197 S1 A1AGP 71 A1AGP H34 H34 H 0 1 N N N N N N -22.340 -15.399 -0.328 9.113 0.479 -0.454 H34 A1AGP 72 A1AGP H35 H35 H 0 1 N N N N N N -21.527 -14.872 -1.841 9.159 -0.381 -2.012 H35 A1AGP 73 A1AGP H36 H36 H 0 1 N N N N N N -22.207 -2.679 5.342 -4.009 -0.908 -1.057 H36 A1AGP 74 A1AGP H37 H37 H 0 1 N N N N N N -20.495 -13.888 0.221 6.907 -1.316 -1.563 H37 A1AGP 75 A1AGP H38 H38 H 0 1 N N N N N N -21.133 -12.646 -0.909 6.878 0.463 -1.529 H38 A1AGP 76 A1AGP H39 H39 H 0 1 N N N N N N -22.121 -5.652 0.733 -0.169 1.606 -0.755 H39 A1AGP 77 A1AGP H40 H40 H 0 1 N N N N N N -19.734 -3.091 3.720 -3.970 0.742 1.373 H40 A1AGP 78 A1AGP H41 H41 H 0 1 N N N N N N -21.087 -6.857 9.040 -4.842 -5.178 2.597 H41 A1AGP 79 A1AGP H42 H42 H 0 1 N N N N N N -21.050 0.503 6.364 -4.365 2.109 -1.311 H42 A1AGP 80 A1AGP O8 O8 O 0 1 N Y N N N N ? ? ? -5.775 -1.440 -2.874 O8 A1AGP 81 A1AGP O9 O9 O 0 1 N Y N N N N ? ? ? -7.454 -1.357 -1.268 O9 A1AGP 82 A1AGP O7 O7 O 0 1 N Y N N N N ? ? ? -7.545 0.289 -2.907 O7 A1AGP 83 A1AGP H33 H33 H 0 1 N N N N N N ? ? ? -8.044 -1.970 -1.727 H33 A1AGP 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGP F1 C24 SING N N 1 A1AGP F2 C24 SING N N 2 A1AGP C11 C9 SING N N 3 A1AGP C24 C23 SING N N 4 A1AGP C24 C25 SING N N 5 A1AGP C23 C22 SING N N 6 A1AGP C9 C10 SING N N 7 A1AGP C9 C8 SING N N 8 A1AGP C25 C26 SING N N 9 A1AGP C22 C21 SING N N 10 A1AGP C26 C21 SING N N 11 A1AGP C8 C7 SING N N 12 A1AGP C21 C20 SING N N 13 A1AGP N1 C7 SING N N 14 A1AGP N1 C6 SING N N 15 A1AGP C20 N4 SING N N 16 A1AGP C7 C12 SING N N 17 A1AGP O2 C6 SING N N 18 A1AGP O2 C5 SING N N 19 A1AGP C6 O6 DOUB N N 20 A1AGP C4 C5 SING N N 21 A1AGP C4 N4 SING N N 22 A1AGP C4 C3 SING N N 23 A1AGP N4 C1 SING N N 24 A1AGP C12 O5 DOUB N N 25 A1AGP C12 N2 SING N N 26 A1AGP C3 C2 SING N N 27 A1AGP C1 O1 DOUB N N 28 A1AGP C1 C2 SING N N 29 A1AGP N2 C13 SING N N 30 A1AGP C19 C13 SING N N 31 A1AGP C19 O4 SING N N 32 A1AGP C13 C14 SING N N 33 A1AGP C14 C15 SING N N 34 A1AGP C15 C18 SING N N 35 A1AGP C15 C16 SING N N 36 A1AGP C18 C17 SING N N 37 A1AGP C17 N3 SING N N 38 A1AGP C16 O3 DOUB N N 39 A1AGP C16 N3 SING N N 40 A1AGP C2 H1 SING N N 41 A1AGP C2 H2 SING N N 42 A1AGP C3 H3 SING N N 43 A1AGP C3 H4 SING N N 44 A1AGP C4 H5 SING N N 45 A1AGP C5 H6 SING N N 46 A1AGP C5 H7 SING N N 47 A1AGP C8 H8 SING N N 48 A1AGP C8 H9 SING N N 49 A1AGP C9 H10 SING N N 50 A1AGP C10 H11 SING N N 51 A1AGP C10 H12 SING N N 52 A1AGP C10 H13 SING N N 53 A1AGP C11 H14 SING N N 54 A1AGP C11 H15 SING N N 55 A1AGP C11 H16 SING N N 56 A1AGP C15 H17 SING N N 57 A1AGP C18 H18 SING N N 58 A1AGP C18 H19 SING N N 59 A1AGP C20 H20 SING N N 60 A1AGP C20 H21 SING N N 61 A1AGP C21 H22 SING N N 62 A1AGP C25 H23 SING N N 63 A1AGP C25 H24 SING N N 64 A1AGP C26 H25 SING N N 65 A1AGP C26 H26 SING N N 66 A1AGP C7 H27 SING N N 67 A1AGP C14 H28 SING N N 68 A1AGP C14 H29 SING N N 69 A1AGP C17 H30 SING N N 70 A1AGP C17 H31 SING N N 71 A1AGP C19 H32 SING N N 72 A1AGP C19 S1 SING N N 73 A1AGP C23 H34 SING N N 74 A1AGP C23 H35 SING N N 75 A1AGP C13 H36 SING N N 76 A1AGP C22 H37 SING N N 77 A1AGP C22 H38 SING N N 78 A1AGP N1 H39 SING N N 79 A1AGP N2 H40 SING N N 80 A1AGP N3 H41 SING N N 81 A1AGP O4 H42 SING N N 82 A1AGP S1 O8 DOUB N N 83 A1AGP S1 O9 SING N N 84 A1AGP S1 O7 DOUB N N 85 A1AGP O9 H33 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGP SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CCC(F)(F)CC1)C(O)S(=O)(=O)O" A1AGP InChI InChI 1.06 "InChI=1S/C26H42F2N4O9S/c1-15(2)11-19(23(35)30-20(24(36)42(38,39)40)12-17-7-10-29-22(17)34)31-25(37)41-14-18-3-4-21(33)32(18)13-16-5-8-26(27,28)9-6-16/h15-20,24,36H,3-14H2,1-2H3,(H,29,34)(H,30,35)(H,31,37)(H,38,39,40)/t17-,18-,19-,20-,24-/m0/s1" A1AGP InChIKey InChI 1.06 RHYSFFXFVGVALZ-HPGFDKJQSA-N A1AGP SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1CC2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" A1AGP SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1CC2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2CC3CCC(CC3)(F)F" A1AGP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CCC(CC3)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGP "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-({N-[({(2S)-1-[(4,4-difluorocyclohexyl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[[4,4-bis(fluoranyl)cyclohexyl]methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGP "Create component" 2024-02-29 RCSB A1AGP "Initial release" 2024-07-10 RCSB A1AGP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGP _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #