data_A1AGQ # _chem_comp.id A1AGQ _chem_comp.name "(1R,2S)-2-{[N-({[(2S)-1-{[(1R,2S,4R)-bicyclo[2.2.1]hept-5-en-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H42 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 598.709 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGQ O4 O1 O 0 1 N N N N N N 10.081 -34.330 0.687 -4.060 2.974 1.995 O4 A1AGQ 1 A1AGQ O3 O2 O 0 1 N N N N N N 12.553 -28.035 0.941 -5.765 -2.281 2.190 O3 A1AGQ 2 A1AGQ C16 C1 C 0 1 N N N N N N 12.614 -28.620 -0.152 -6.339 -1.646 1.331 C16 A1AGQ 3 A1AGQ C15 C2 C 0 1 N N S N N N 11.774 -29.820 -0.572 -5.688 -0.619 0.432 C15 A1AGQ 4 A1AGQ C14 C3 C 0 1 N N N N N N 11.543 -30.834 0.551 -4.780 0.306 1.245 C14 A1AGQ 5 A1AGQ C13 C4 C 0 1 N N S N N N 10.754 -32.056 0.077 -4.037 1.252 0.299 C13 A1AGQ 6 A1AGQ C18 C5 C 0 1 N N N N N N 12.541 -30.372 -1.775 -6.876 0.174 -0.161 C18 A1AGQ 7 A1AGQ C17 C6 C 0 1 N N N N N N 13.208 -29.135 -2.349 -8.023 -0.855 -0.059 C17 A1AGQ 8 A1AGQ C4 C7 C 0 1 N N S N N N 8.932 -27.417 -6.147 4.705 -2.243 -0.011 C4 A1AGQ 9 A1AGQ O2 O3 O 0 1 N N N N N N 8.035 -29.023 -4.531 2.330 -1.730 -0.174 O2 A1AGQ 10 A1AGQ C3 C8 C 0 1 N N N N N N 10.423 -27.695 -6.361 4.317 -3.537 0.738 C3 A1AGQ 11 A1AGQ C2 C9 C 0 1 N N N N N N 11.084 -26.371 -6.054 4.986 -3.317 2.115 C2 A1AGQ 12 A1AGQ C1 C10 C 0 1 N N N N N N 10.047 -25.360 -6.456 5.096 -1.813 2.237 C1 A1AGQ 13 A1AGQ C6 C11 C 0 1 N N N N N N 8.055 -29.455 -3.253 1.223 -1.355 -0.843 C6 A1AGQ 14 A1AGQ C7 C12 C 0 1 N N S N N N 7.524 -31.374 -1.871 -1.180 -0.968 -0.946 C7 A1AGQ 15 A1AGQ C9 C13 C 0 1 N N N N N N 5.061 -32.100 -1.991 -3.032 -1.954 -2.303 C9 A1AGQ 16 A1AGQ N3 N1 N 0 1 N N N N N N 13.419 -28.312 -1.165 -7.645 -1.758 1.035 N3 A1AGQ 17 A1AGQ N2 N2 N 0 1 N N N N N N 9.409 -31.652 -0.339 -3.154 0.475 -0.575 N2 A1AGQ 18 A1AGQ C8 C14 C 0 1 N N N N N N 6.519 -32.525 -1.872 -1.798 -2.271 -1.455 C8 A1AGQ 19 A1AGQ O1 O4 O 0 1 N N N N N N 10.235 -24.171 -6.712 5.305 -1.214 3.271 O1 A1AGQ 20 A1AGQ C10 C15 C 0 1 N N N N N N 4.149 -33.312 -2.077 -2.602 -1.216 -3.573 C10 A1AGQ 21 A1AGQ C11 C16 C 0 1 N N N N N N 4.680 -31.236 -0.803 -3.737 -3.257 -2.684 C11 A1AGQ 22 A1AGQ C12 C17 C 0 1 N N N N N N 8.928 -31.895 -1.565 -2.162 -0.265 -0.043 C12 A1AGQ 23 A1AGQ C19 C18 C 0 1 N N R N N N 10.671 -33.125 1.159 -3.203 2.240 1.118 C19 A1AGQ 24 A1AGQ C20 C19 C 0 1 N N N N N N 7.538 -25.345 -6.688 4.969 0.208 0.796 C20 A1AGQ 25 A1AGQ C21 C20 C 0 1 N N S N N N 6.686 -26.122 -7.686 6.404 0.636 0.483 C21 A1AGQ 26 A1AGQ C22 C21 C 0 1 N N N N N N 5.218 -25.639 -7.705 6.852 0.075 -0.889 C22 A1AGQ 27 A1AGQ C23 C22 C 0 1 N N R N N N 5.012 -25.179 -9.159 7.149 1.356 -1.732 C23 A1AGQ 28 A1AGQ C24 C23 C 0 1 N N N N N N 5.073 -26.453 -9.955 8.381 1.971 -1.057 C24 A1AGQ 29 A1AGQ C25 C24 C 0 1 N N N N N N 6.331 -26.840 -10.000 8.018 2.448 0.117 C25 A1AGQ 30 A1AGQ C26 C25 C 0 1 N N R N N N 7.143 -25.899 -9.162 6.487 2.185 0.298 C26 A1AGQ 31 A1AGQ C27 C26 C 0 1 N N N N N N 6.389 -24.603 -9.483 6.019 2.313 -1.202 C27 A1AGQ 32 A1AGQ C5 C27 C 0 1 N N N N N N 8.487 -27.658 -4.714 3.566 -1.804 -0.933 C5 A1AGQ 33 A1AGQ N1 N3 N 0 1 N N N N N N 7.523 -30.685 -3.146 0.043 -1.267 -0.198 N1 A1AGQ 34 A1AGQ N4 N4 N 0 1 N N N N N N 8.838 -25.973 -6.445 4.931 -1.237 1.033 N4 A1AGQ 35 A1AGQ O5 O5 O 0 1 N N N N N N 9.565 -32.508 -2.427 -2.058 -0.367 1.161 O5 A1AGQ 36 A1AGQ O6 O6 O 0 1 N N N N N N 8.503 -28.809 -2.326 1.288 -1.096 -2.028 O6 A1AGQ 37 A1AGQ H1 H1 H 0 1 N N N N N N 10.050 -34.965 1.393 -4.546 2.422 2.623 H1 A1AGQ 38 A1AGQ H2 H2 H 0 1 N N N N N N 10.796 -29.457 -0.920 -5.121 -1.109 -0.360 H2 A1AGQ 39 A1AGQ H3 H3 H 0 1 N N N N N N 12.519 -31.169 0.931 -5.384 0.888 1.941 H3 A1AGQ 40 A1AGQ H4 H4 H 0 1 N N N N N N 10.983 -30.344 1.361 -4.058 -0.292 1.802 H4 A1AGQ 41 A1AGQ H5 H5 H 0 1 N N N N N N 11.280 -32.486 -0.788 -4.758 1.800 -0.307 H5 A1AGQ 42 A1AGQ H6 H6 H 0 1 N N N N N N 11.856 -30.827 -2.506 -7.092 1.059 0.438 H6 A1AGQ 43 A1AGQ H7 H7 H 0 1 N N N N N N 13.289 -31.115 -1.461 -6.685 0.445 -1.199 H7 A1AGQ 44 A1AGQ H8 H8 H 0 1 N N N N N N 14.163 -29.387 -2.833 -8.962 -0.352 0.172 H8 A1AGQ 45 A1AGQ H9 H9 H 0 1 N N N N N N 12.552 -28.629 -3.073 -8.113 -1.414 -0.990 H9 A1AGQ 46 A1AGQ H10 H10 H 0 1 N N N N N N 8.325 -28.010 -6.847 5.617 -2.400 -0.587 H10 A1AGQ 47 A1AGQ H11 H11 H 0 1 N N N N N N 10.778 -28.479 -5.675 3.235 -3.620 0.839 H11 A1AGQ 48 A1AGQ H12 H12 H 0 1 N N N N N N 10.620 -28.000 -7.399 4.729 -4.415 0.240 H12 A1AGQ 49 A1AGQ H13 H13 H 0 1 N N N N N N 12.005 -26.245 -6.643 4.361 -3.720 2.912 H13 A1AGQ 50 A1AGQ H14 H14 H 0 1 N N N N N N 11.320 -26.288 -4.983 5.974 -3.777 2.137 H14 A1AGQ 51 A1AGQ H15 H15 H 0 1 N N N N N N 7.238 -30.668 -1.077 -0.940 -0.324 -1.792 H15 A1AGQ 52 A1AGQ H16 H16 H 0 1 N N N N N N 4.943 -31.506 -2.909 -3.714 -1.325 -1.731 H16 A1AGQ 53 A1AGQ H17 H17 H 0 1 N N N N N N 14.104 -27.585 -1.119 -8.260 -2.355 1.489 H17 A1AGQ 54 A1AGQ H18 H18 H 0 1 N N N N N N 8.826 -31.175 0.319 -3.285 0.494 -1.536 H18 A1AGQ 55 A1AGQ H19 H19 H 0 1 N N N N N N 6.637 -33.083 -0.932 -1.068 -2.807 -2.062 H19 A1AGQ 56 A1AGQ H20 H20 H 0 1 N N N N N N 6.754 -33.184 -2.721 -2.090 -2.891 -0.607 H20 A1AGQ 57 A1AGQ H21 H21 H 0 1 N N N N N N 3.104 -32.980 -2.162 -1.971 -1.869 -4.176 H21 A1AGQ 58 A1AGQ H22 H22 H 0 1 N N N N N N 4.417 -33.910 -2.961 -3.485 -0.933 -4.145 H22 A1AGQ 59 A1AGQ H23 H23 H 0 1 N N N N N N 4.266 -33.924 -1.171 -2.042 -0.321 -3.301 H23 A1AGQ 60 A1AGQ H24 H24 H 0 1 N N N N N N 5.348 -30.364 -0.754 -4.043 -3.782 -1.780 H24 A1AGQ 61 A1AGQ H25 H25 H 0 1 N N N N N N 3.640 -30.895 -0.916 -4.616 -3.031 -3.288 H25 A1AGQ 62 A1AGQ H26 H26 H 0 1 N N N N N N 4.775 -31.823 0.123 -3.055 -3.886 -3.256 H26 A1AGQ 63 A1AGQ S1 S1 S 0 1 N Y N N N N 10.114 -32.752 1.993 -2.356 3.389 -0.002 S1 A1AGQ 64 A1AGQ H28 H28 H 0 1 N N N N N N 11.713 -33.363 1.420 -2.465 1.694 1.705 H28 A1AGQ 65 A1AGQ H29 H29 H 0 1 N N N N N N 7.705 -24.332 -7.082 4.619 0.732 1.686 H29 A1AGQ 66 A1AGQ H30 H30 H 0 1 N N N N N N 6.994 -25.283 -5.734 4.324 0.455 -0.048 H30 A1AGQ 67 A1AGQ H31 H31 H 0 1 N N N N N N 6.719 -27.196 -7.451 7.081 0.308 1.271 H31 A1AGQ 68 A1AGQ H32 H32 H 0 1 N N N N N N 5.069 -24.805 -7.004 7.753 -0.529 -0.780 H32 A1AGQ 69 A1AGQ H33 H33 H 0 1 N N N N N N 4.531 -26.459 -7.451 6.053 -0.509 -1.344 H33 A1AGQ 70 A1AGQ H34 H34 H 0 1 N N N N N N 4.151 -24.520 -9.342 7.207 1.220 -2.812 H34 A1AGQ 71 A1AGQ H35 H35 H 0 1 N N N N N N 4.235 -26.960 -10.409 9.377 2.007 -1.472 H35 A1AGQ 72 A1AGQ H37 H37 H 0 1 N N N N N N 6.712 -27.690 -10.547 8.666 2.941 0.826 H37 A1AGQ 73 A1AGQ H39 H39 H 0 1 N N N N N N 8.230 -25.888 -9.332 5.977 2.793 1.046 H39 A1AGQ 74 A1AGQ H40 H40 H 0 1 N N N N N N 6.671 -23.767 -8.827 6.131 3.326 -1.589 H40 A1AGQ 75 A1AGQ H41 H41 H 0 1 N N N N N N 6.490 -24.295 -10.534 5.015 1.921 -1.362 H41 A1AGQ 76 A1AGQ H42 H42 H 0 1 N N N N N N 9.333 -27.466 -4.038 3.794 -0.823 -1.351 H42 A1AGQ 77 A1AGQ H43 H43 H 0 1 N N N N N N 7.662 -26.971 -4.474 3.453 -2.526 -1.741 H43 A1AGQ 78 A1AGQ H44 H44 H 0 1 N N N N N N 7.125 -31.127 -3.950 0.004 -1.401 0.762 H44 A1AGQ 79 A1AGQ O9 O9 O 0 1 N Y N N N N ? ? ? -3.278 3.964 -0.917 O9 A1AGQ 80 A1AGQ O7 O7 O 0 1 N Y N N N N ? ? ? -1.436 4.199 0.718 O7 A1AGQ 81 A1AGQ O8 O8 O 0 1 N Y N N N N ? ? ? -1.476 2.497 -0.865 O8 A1AGQ 82 A1AGQ H27 H27 H 0 1 N N N N N N ? ? ? -0.954 2.978 -1.523 H27 A1AGQ 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGQ C25 C24 DOUB N N 1 A1AGQ C25 C26 SING N N 2 A1AGQ C24 C23 SING N N 3 A1AGQ C27 C26 SING N N 4 A1AGQ C27 C23 SING N N 5 A1AGQ C26 C21 SING N N 6 A1AGQ C23 C22 SING N N 7 A1AGQ C22 C21 SING N N 8 A1AGQ C21 C20 SING N N 9 A1AGQ O1 C1 DOUB N N 10 A1AGQ C20 N4 SING N N 11 A1AGQ C1 N4 SING N N 12 A1AGQ C1 C2 SING N N 13 A1AGQ N4 C4 SING N N 14 A1AGQ C3 C4 SING N N 15 A1AGQ C3 C2 SING N N 16 A1AGQ C4 C5 SING N N 17 A1AGQ C5 O2 SING N N 18 A1AGQ O2 C6 SING N N 19 A1AGQ C6 N1 SING N N 20 A1AGQ C6 O6 DOUB N N 21 A1AGQ N1 C7 SING N N 22 A1AGQ O5 C12 DOUB N N 23 A1AGQ C17 C18 SING N N 24 A1AGQ C17 N3 SING N N 25 A1AGQ C10 C9 SING N N 26 A1AGQ C9 C8 SING N N 27 A1AGQ C9 C11 SING N N 28 A1AGQ C8 C7 SING N N 29 A1AGQ C7 C12 SING N N 30 A1AGQ C18 C15 SING N N 31 A1AGQ C12 N2 SING N N 32 A1AGQ N3 C16 SING N N 33 A1AGQ C15 C16 SING N N 34 A1AGQ C15 C14 SING N N 35 A1AGQ N2 C13 SING N N 36 A1AGQ C16 O3 DOUB N N 37 A1AGQ C13 C14 SING N N 38 A1AGQ C13 C19 SING N N 39 A1AGQ O4 C19 SING N N 40 A1AGQ O4 H1 SING N N 41 A1AGQ C15 H2 SING N N 42 A1AGQ C14 H3 SING N N 43 A1AGQ C14 H4 SING N N 44 A1AGQ C13 H5 SING N N 45 A1AGQ C18 H6 SING N N 46 A1AGQ C18 H7 SING N N 47 A1AGQ C17 H8 SING N N 48 A1AGQ C17 H9 SING N N 49 A1AGQ C4 H10 SING N N 50 A1AGQ C3 H11 SING N N 51 A1AGQ C3 H12 SING N N 52 A1AGQ C2 H13 SING N N 53 A1AGQ C2 H14 SING N N 54 A1AGQ C7 H15 SING N N 55 A1AGQ C9 H16 SING N N 56 A1AGQ N3 H17 SING N N 57 A1AGQ N2 H18 SING N N 58 A1AGQ C8 H19 SING N N 59 A1AGQ C8 H20 SING N N 60 A1AGQ C10 H21 SING N N 61 A1AGQ C10 H22 SING N N 62 A1AGQ C10 H23 SING N N 63 A1AGQ C11 H24 SING N N 64 A1AGQ C11 H25 SING N N 65 A1AGQ C11 H26 SING N N 66 A1AGQ C19 S1 SING N N 67 A1AGQ C19 H28 SING N N 68 A1AGQ C20 H29 SING N N 69 A1AGQ C20 H30 SING N N 70 A1AGQ C21 H31 SING N N 71 A1AGQ C22 H32 SING N N 72 A1AGQ C22 H33 SING N N 73 A1AGQ C23 H34 SING N N 74 A1AGQ C24 H35 SING N N 75 A1AGQ C25 H37 SING N N 76 A1AGQ C26 H39 SING N N 77 A1AGQ C27 H40 SING N N 78 A1AGQ C27 H41 SING N N 79 A1AGQ C5 H42 SING N N 80 A1AGQ C5 H43 SING N N 81 A1AGQ N1 H44 SING N N 82 A1AGQ S1 O9 DOUB N N 83 A1AGQ S1 O7 DOUB N N 84 A1AGQ S1 O8 SING N N 85 A1AGQ O8 H27 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGQ SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CC2CC1C=C2)C(O)S(=O)(=O)O" A1AGQ InChI InChI 1.06 "InChI=1S/C27H42N4O9S/c1-15(2)9-21(25(34)29-22(26(35)41(37,38)39)12-18-7-8-28-24(18)33)30-27(36)40-14-20-5-6-23(32)31(20)13-19-11-16-3-4-17(19)10-16/h3-4,15-22,26,35H,5-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t16-,17+,18+,19-,20+,21+,22+,26-/m1/s1" A1AGQ InChIKey InChI 1.06 DZWIJESAJPXJIB-AQOOIRESSA-N A1AGQ SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1C[C@H]2C[C@H]3C[C@@H]2C=C3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](O)[S](O)(=O)=O" A1AGQ SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1C[CH]2C[CH]3C[CH]2C=C3)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" A1AGQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2C[C@H]3C[C@H]4C[C@@H]3C=C4" A1AGQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CC4CC3C=C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGQ "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-{[N-({[(2S)-1-{[(1R,2S,4R)-bicyclo[2.2.1]hept-5-en-2-yl]methyl}-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[[(1~{R},2~{S},4~{R})-2-bicyclo[2.2.1]hept-5-enyl]methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGQ "Create component" 2024-02-29 RCSB A1AGQ "Initial release" 2024-07-10 RCSB A1AGQ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGQ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #