data_A1AGS # _chem_comp.id A1AGS _chem_comp.name "(1R,2S)-2-({N-[({(2S)-1-[(2,2-difluoro-2H-1,3-benzodioxol-5-yl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H36 F2 N4 O11 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 662.657 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AT7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGS C1 C1 C 0 1 N N N N N N 12.840 27.218 22.233 3.591 -0.794 -1.090 C1 A1AGS 1 A1AGS O2 O1 O 0 1 N N N N N N 11.483 25.494 26.282 1.215 1.251 -0.942 O2 A1AGS 2 A1AGS C3 C2 C 0 1 N N N N N N 13.103 25.687 24.035 3.534 1.098 -2.588 C3 A1AGS 3 A1AGS C4 C3 C 0 1 N N S N N N 11.696 26.292 24.028 3.628 1.528 -1.107 C4 A1AGS 4 A1AGS C5 C4 C 0 1 N N N N N N 11.033 26.523 25.371 2.310 2.159 -0.654 C5 A1AGS 5 A1AGS O6 O2 O 0 1 N N N N N N 10.674 23.702 25.084 -0.183 2.744 -0.079 O6 A1AGS 6 A1AGS C7 C5 C 0 1 N N S N N N 12.024 22.041 27.036 -2.430 1.307 -0.473 C7 A1AGS 7 A1AGS C8 C6 C 0 1 N N N N N N 13.107 21.664 28.043 -3.009 2.171 -1.596 C8 A1AGS 8 A1AGS C9 C7 C 0 1 N N N N N N 14.498 22.194 27.705 -2.184 3.452 -1.731 C9 A1AGS 9 A1AGS C10 C8 C 0 1 N N N N N N 15.488 22.010 28.856 -2.684 4.256 -2.933 C10 A1AGS 10 A1AGS C11 C9 C 0 1 N N N N N N 15.003 21.518 26.442 -2.330 4.290 -0.460 C11 A1AGS 11 A1AGS C12 C10 C 0 1 N N N N N N 10.637 21.598 27.483 -3.314 0.105 -0.257 C12 A1AGS 12 A1AGS C13 C11 C 0 1 N N S N N N 8.980 19.794 27.568 -5.489 -0.890 0.205 C13 A1AGS 13 A1AGS C16 C12 C 0 1 N N N N N N 6.614 20.962 24.703 -5.209 0.783 2.690 C16 A1AGS 14 A1AGS C17 C13 C 0 1 N N N N N N 5.619 22.552 26.091 -7.240 1.424 3.616 C17 A1AGS 15 A1AGS C18 C14 C 0 1 N N N N N N 6.655 21.834 26.937 -7.273 -0.119 3.558 C18 A1AGS 16 A1AGS C19 C15 C 0 1 N N R N N N 9.169 18.431 28.185 -6.043 -1.245 -1.177 C19 A1AGS 17 A1AGS C20 C16 C 0 1 N N N N N N 11.507 28.834 23.559 4.394 0.251 1.017 C20 A1AGS 18 A1AGS C21 C17 C 0 1 Y N N N N N 10.031 29.048 23.317 5.900 0.212 0.992 C21 A1AGS 19 A1AGS C22 C18 C 0 1 Y N N N N N 9.198 27.992 22.957 6.558 -1.004 0.950 C22 A1AGS 20 A1AGS C24 C19 C 0 1 N N N N N N 5.715 28.165 22.318 10.071 -1.521 0.448 C24 A1AGS 21 A1AGS C26 C20 C 0 1 Y N N N N N 8.130 30.580 23.261 8.003 1.360 0.984 C26 A1AGS 22 A1AGS C27 C21 C 0 1 Y N N N N N 9.489 30.318 23.467 6.621 1.391 1.007 C27 A1AGS 23 A1AGS C14 C22 C 0 1 N N N N N N 8.038 19.737 26.363 -6.647 -0.561 1.149 C14 A1AGS 24 A1AGS C15 C23 C 0 1 N N S N N N 7.527 21.106 25.912 -6.116 -0.422 2.578 C15 A1AGS 25 A1AGS C2 C24 C 0 1 N N N N N N 13.525 25.923 22.592 3.100 -0.380 -2.460 C2 A1AGS 26 A1AGS C23 C25 C 0 1 Y N N N N N 7.872 28.254 22.758 7.943 -1.042 0.923 C23 A1AGS 27 A1AGS C25 C26 C 0 1 Y N N N N N 7.350 29.519 22.910 8.669 0.146 0.937 C25 A1AGS 28 A1AGS C6 C27 C 0 1 N N N N N N 11.314 24.182 26.005 -0.023 1.659 -0.602 C6 A1AGS 29 A1AGS F1 F1 F 0 1 N N N N N N 5.194 28.099 21.090 11.143 -2.183 1.056 F1 A1AGS 30 A1AGS F2 F2 F 0 1 N N N N N N 4.777 27.677 23.134 10.186 -1.574 -0.946 F2 A1AGS 31 A1AGS N1 N1 N 0 1 N N N N N N 11.992 23.484 26.922 -1.084 0.863 -0.842 N1 A1AGS 32 A1AGS N2 N2 N 0 1 N N N N N N 10.288 20.337 27.204 -4.605 0.272 0.092 N2 A1AGS 33 A1AGS N3 N3 N 0 1 N N N N N N 5.558 21.749 24.879 -5.862 1.799 3.280 N3 A1AGS 34 A1AGS N4 N4 N 0 1 N N N N N N 12.013 27.503 23.258 3.885 0.293 -0.356 N4 A1AGS 35 A1AGS O1 O3 O 0 1 N N N N N N 13.054 27.929 21.253 3.699 -1.940 -0.708 O1 A1AGS 36 A1AGS O3 O4 O 0 1 N N N N N N 6.837 20.248 23.725 -4.058 0.825 2.309 O3 A1AGS 37 A1AGS O4 O5 O 0 1 N N N N N N 10.000 18.519 29.336 -6.900 -0.195 -1.630 O4 A1AGS 38 A1AGS O5 O6 O 0 1 N N N N N N 9.890 22.395 28.057 -2.863 -1.012 -0.398 O5 A1AGS 39 A1AGS O7 O7 O 0 1 N N N N N N 6.842 27.385 22.391 8.819 -2.088 0.874 O7 A1AGS 40 A1AGS O8 O8 O 0 1 N N N N N N 5.981 29.472 22.640 10.000 -0.155 0.904 O8 A1AGS 41 A1AGS H1 H1 H 0 1 N N N N N N 13.081 24.615 24.280 2.780 1.682 -3.116 H1 A1AGS 42 A1AGS H2 H2 H 0 1 N N N N N N 13.765 26.211 24.741 4.503 1.180 -3.080 H2 A1AGS 43 A1AGS H3 H3 H 0 1 N N N N N N 11.044 25.643 23.425 4.450 2.231 -0.970 H3 A1AGS 44 A1AGS H4 H4 H 0 1 N N N N N N 11.314 27.513 25.759 2.155 3.097 -1.186 H4 A1AGS 45 A1AGS H5 H5 H 0 1 N N N N N N 9.940 26.470 25.260 2.349 2.352 0.418 H5 A1AGS 46 A1AGS H6 H6 H 0 1 N N N N N N 12.257 21.584 26.063 -2.381 1.891 0.446 H6 A1AGS 47 A1AGS H7 H7 H 0 1 N N N N N N 12.816 22.064 29.026 -2.976 1.616 -2.534 H7 A1AGS 48 A1AGS H8 H8 H 0 1 N N N N N N 13.161 20.567 28.095 -4.042 2.427 -1.361 H8 A1AGS 49 A1AGS H9 H9 H 0 1 N N N N N N 14.410 23.272 27.503 -1.134 3.194 -1.877 H9 A1AGS 50 A1AGS H10 H10 H 0 1 N N N N N N 15.100 22.508 29.757 -3.733 4.514 -2.786 H10 A1AGS 51 A1AGS H11 H11 H 0 1 N N N N N N 15.620 20.937 29.058 -2.095 5.169 -3.029 H11 A1AGS 52 A1AGS H12 H12 H 0 1 N N N N N N 16.456 22.453 28.581 -2.579 3.659 -3.839 H12 A1AGS 53 A1AGS H13 H13 H 0 1 N N N N N N 16.005 21.899 26.197 -1.742 5.202 -0.556 H13 A1AGS 54 A1AGS H14 H14 H 0 1 N N N N N N 15.053 20.431 26.603 -3.379 4.547 -0.313 H14 A1AGS 55 A1AGS H15 H15 H 0 1 N N N N N N 14.316 21.734 25.611 -1.974 3.717 0.397 H15 A1AGS 56 A1AGS H16 H16 H 0 1 N N N N N N 8.523 20.451 28.323 -4.928 -1.737 0.600 H16 A1AGS 57 A1AGS H17 H17 H 0 1 N N N N N N 5.938 23.580 25.866 -7.934 1.844 2.888 H17 A1AGS 58 A1AGS H18 H18 H 0 1 N N N N N N 4.643 22.574 26.598 -7.492 1.769 4.619 H18 A1AGS 59 A1AGS H19 H19 H 0 1 N N N N N N 6.174 21.119 27.620 -7.076 -0.551 4.539 H19 A1AGS 60 A1AGS H20 H20 H 0 1 N N N N N N 7.252 22.552 27.518 -8.224 -0.474 3.161 H20 A1AGS 61 A1AGS S1 S1 S 0 1 N Y N N N N 9.600 17.761 27.471 -6.985 -2.792 -1.071 S1 A1AGS 62 A1AGS H22 H22 H 0 1 N N N N N N 8.174 18.111 28.528 -5.218 -1.370 -1.878 H22 A1AGS 63 A1AGS H23 H23 H 0 1 N N N N N N 11.708 29.039 24.621 4.016 -0.641 1.517 H23 A1AGS 64 A1AGS H24 H24 H 0 1 N N N N N N 12.059 29.553 22.936 4.062 1.138 1.555 H24 A1AGS 65 A1AGS H25 H25 H 0 1 N N N N N N 9.590 26.993 22.838 5.992 -1.924 0.939 H25 A1AGS 66 A1AGS H26 H26 H 0 1 N N N N N N 7.720 31.573 23.374 8.564 2.283 0.996 H26 A1AGS 67 A1AGS H27 H27 H 0 1 N N N N N N 10.139 31.132 23.753 6.104 2.339 1.035 H27 A1AGS 68 A1AGS H28 H28 H 0 1 N N N N N N 7.171 19.114 26.630 -7.111 0.376 0.842 H28 A1AGS 69 A1AGS H29 H29 H 0 1 N N N N N N 8.577 19.274 25.523 -7.385 -1.362 1.112 H29 A1AGS 70 A1AGS H30 H30 H 0 1 N N N N N N 8.384 21.743 25.647 -5.587 -1.327 2.877 H30 A1AGS 71 A1AGS H31 H31 H 0 1 N N N N N N 13.182 25.104 21.943 3.573 -0.985 -3.234 H31 A1AGS 72 A1AGS H32 H32 H 0 1 N N N N N N 14.618 26.021 22.513 2.015 -0.465 -2.518 H32 A1AGS 73 A1AGS H33 H33 H 0 1 N N N N N N 12.525 24.005 27.589 -0.956 -0.003 -1.260 H33 A1AGS 74 A1AGS H34 H34 H 0 1 N N N N N N 10.943 19.747 26.731 -4.948 1.162 0.269 H34 A1AGS 75 A1AGS H35 H35 H 0 1 N N N N N N 4.792 21.786 24.238 -5.472 2.669 3.461 H35 A1AGS 76 A1AGS H36 H36 H 0 1 N N N N N N 10.111 17.655 29.714 -6.462 0.663 -1.711 H36 A1AGS 77 A1AGS O10 O10 O 0 1 N Y N N N N ? ? ? -8.050 -2.664 -0.139 O10 A1AGS 78 A1AGS O9 O9 O 0 1 N Y N N N N ? ? ? -7.207 -3.330 -2.368 O9 A1AGS 79 A1AGS O11 O11 O 0 1 N Y N N N N ? ? ? -6.028 -3.776 -0.415 O11 A1AGS 80 A1AGS H21 H21 H 0 1 N N N N N N ? ? ? -6.398 -4.661 -0.291 H21 A1AGS 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGS F1 C24 SING N N 1 A1AGS O1 C1 DOUB N N 2 A1AGS C1 C2 SING N N 3 A1AGS C1 N4 SING N N 4 A1AGS C24 O7 SING N N 5 A1AGS C24 O8 SING N N 6 A1AGS C24 F2 SING N N 7 A1AGS O7 C23 SING N N 8 A1AGS C2 C3 SING N N 9 A1AGS O8 C25 SING N N 10 A1AGS C23 C25 DOUB Y N 11 A1AGS C23 C22 SING Y N 12 A1AGS C25 C26 SING Y N 13 A1AGS C22 C21 DOUB Y N 14 A1AGS N4 C20 SING N N 15 A1AGS N4 C4 SING N N 16 A1AGS C26 C27 DOUB Y N 17 A1AGS C21 C27 SING Y N 18 A1AGS C21 C20 SING N N 19 A1AGS O3 C16 DOUB N N 20 A1AGS C4 C3 SING N N 21 A1AGS C4 C5 SING N N 22 A1AGS C16 N3 SING N N 23 A1AGS C16 C15 SING N N 24 A1AGS N3 C17 SING N N 25 A1AGS O6 C6 DOUB N N 26 A1AGS C5 O2 SING N N 27 A1AGS C15 C14 SING N N 28 A1AGS C15 C18 SING N N 29 A1AGS C6 O2 SING N N 30 A1AGS C6 N1 SING N N 31 A1AGS C17 C18 SING N N 32 A1AGS C14 C13 SING N N 33 A1AGS C11 C9 SING N N 34 A1AGS N1 C7 SING N N 35 A1AGS C7 C12 SING N N 36 A1AGS C7 C8 SING N N 37 A1AGS N2 C12 SING N N 38 A1AGS N2 C13 SING N N 39 A1AGS C12 O5 DOUB N N 40 A1AGS C13 C19 SING N N 41 A1AGS C9 C8 SING N N 42 A1AGS C9 C10 SING N N 43 A1AGS C19 O4 SING N N 44 A1AGS C3 H1 SING N N 45 A1AGS C3 H2 SING N N 46 A1AGS C4 H3 SING N N 47 A1AGS C5 H4 SING N N 48 A1AGS C5 H5 SING N N 49 A1AGS C7 H6 SING N N 50 A1AGS C8 H7 SING N N 51 A1AGS C8 H8 SING N N 52 A1AGS C9 H9 SING N N 53 A1AGS C10 H10 SING N N 54 A1AGS C10 H11 SING N N 55 A1AGS C10 H12 SING N N 56 A1AGS C11 H13 SING N N 57 A1AGS C11 H14 SING N N 58 A1AGS C11 H15 SING N N 59 A1AGS C13 H16 SING N N 60 A1AGS C17 H17 SING N N 61 A1AGS C17 H18 SING N N 62 A1AGS C18 H19 SING N N 63 A1AGS C18 H20 SING N N 64 A1AGS C19 S1 SING N N 65 A1AGS C19 H22 SING N N 66 A1AGS C20 H23 SING N N 67 A1AGS C20 H24 SING N N 68 A1AGS C22 H25 SING N N 69 A1AGS C26 H26 SING N N 70 A1AGS C27 H27 SING N N 71 A1AGS C14 H28 SING N N 72 A1AGS C14 H29 SING N N 73 A1AGS C15 H30 SING N N 74 A1AGS C2 H31 SING N N 75 A1AGS C2 H32 SING N N 76 A1AGS N1 H33 SING N N 77 A1AGS N2 H34 SING N N 78 A1AGS N3 H35 SING N N 79 A1AGS O4 H36 SING N N 80 A1AGS S1 O10 DOUB N N 81 A1AGS S1 O9 DOUB N N 82 A1AGS S1 O11 SING N N 83 A1AGS O11 H21 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGS SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1Cc1ccc2OC(F)(F)Oc2c1)C(O)S(=O)(=O)O" A1AGS InChI InChI 1.06 "InChI=1S/C27H36F2N4O11S/c1-14(2)9-18(24(36)31-19(25(37)45(39,40)41)11-16-7-8-30-23(16)35)32-26(38)42-13-17-4-6-22(34)33(17)12-15-3-5-20-21(10-15)44-27(28,29)43-20/h3,5,10,14,16-19,25,37H,4,6-9,11-13H2,1-2H3,(H,30,35)(H,31,36)(H,32,38)(H,39,40,41)/t16-,17-,18-,19-,25+/m0/s1" A1AGS InChIKey InChI 1.06 ITFVOMQMGITEDI-WAMQXFNRSA-N A1AGS SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1Cc2ccc3OC(F)(F)Oc3c2)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](O)[S](O)(=O)=O" A1AGS SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1Cc2ccc3OC(F)(F)Oc3c2)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" A1AGS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2Cc3ccc4c(c3)OC(O4)(F)F" A1AGS SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2Cc3ccc4c(c3)OC(O4)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGS "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-({N-[({(2S)-1-[(2,2-difluoro-2H-1,3-benzodioxol-5-yl)methyl]-5-oxopyrrolidin-2-yl}methoxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-[[2,2-bis(fluoranyl)-1,3-benzodioxol-5-yl]methyl]-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGS "Create component" 2024-02-29 RCSB A1AGS "Initial release" 2024-07-10 RCSB A1AGS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGS _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #