data_A1AGU # _chem_comp.id A1AGU _chem_comp.name "(1R,2S)-2-{[N-({[(3S)-1-{[(1R,2R,4R)-bicyclo[2.2.1]hept-5-en-2-yl]methyl}-5-oxopyrrolidin-3-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H42 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 598.709 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGU C10 C1 C 0 1 N N N N N N -19.278 0.640 -0.408 -2.679 1.392 4.202 C10 A1AGU 1 A1AGU C13 C2 C 0 1 N N N N N N -20.445 1.224 6.568 -5.891 -1.175 -0.332 C13 A1AGU 2 A1AGU C15 C3 C 0 1 N N N N N N -20.305 -1.026 7.739 -4.001 -2.808 -0.232 C15 A1AGU 3 A1AGU C21 C4 C 0 1 N N R N N N -22.764 -8.031 -0.502 8.875 0.400 -0.096 C21 A1AGU 4 A1AGU C12 C5 C 0 1 N N S N N N -21.108 2.031 5.449 -5.005 0.061 -0.497 C12 A1AGU 5 A1AGU C16 C6 C 0 1 N N N N N N -22.554 -1.616 7.821 -5.674 -4.324 0.315 C16 A1AGU 6 A1AGU C19 C7 C 0 1 N N N N N N -22.505 -5.780 1.605 5.699 -0.010 -1.167 C19 A1AGU 7 A1AGU C23 C8 C 0 1 N N R N N N -24.260 -9.701 -1.397 10.195 -1.092 -1.515 C23 A1AGU 8 A1AGU C6 C9 C 0 1 N N S N N N -21.158 0.328 2.013 -1.391 0.347 0.730 C6 A1AGU 9 A1AGU C7 C10 C 0 1 N N N N N N -21.382 1.269 0.831 -1.425 1.101 2.061 C7 A1AGU 10 A1AGU C8 C11 C 0 1 N N N N N N -20.781 0.816 -0.499 -2.549 0.543 2.935 C8 A1AGU 11 A1AGU C9 C12 C 0 1 N N N N N N -21.140 1.799 -1.600 -2.227 -0.902 3.321 C9 A1AGU 12 A1AGU O4 O1 O 0 1 N N N N N N -21.449 4.274 4.543 -6.243 1.079 1.312 O4 A1AGU 13 A1AGU C3 C13 C 0 1 N N S N N N -22.277 -5.312 3.043 4.360 0.758 -1.240 C3 A1AGU 14 A1AGU C2 C14 C 0 1 N N N N N N -22.935 -6.441 3.854 4.741 2.116 -0.606 C2 A1AGU 15 A1AGU C14 C15 C 0 1 N N S N N N -21.007 -0.191 6.686 -5.225 -2.375 -1.008 C14 A1AGU 16 A1AGU C17 C16 C 0 1 N N N N N N -22.469 -0.280 7.109 -6.158 -3.608 -0.965 C17 A1AGU 17 A1AGU C1 C17 C 0 1 N N N N N N -22.770 -7.657 2.975 5.925 1.793 0.279 C1 A1AGU 18 A1AGU C22 C18 C 0 1 N N N N N N -24.138 -8.665 -0.248 8.926 -0.181 -1.531 C22 A1AGU 19 A1AGU C24 C19 C 0 1 N N N N N N -23.240 -10.766 -1.115 9.830 -2.224 -0.547 C24 A1AGU 20 A1AGU C25 C20 C 0 1 N N N N N N -22.044 -10.237 -1.309 9.787 -1.729 0.674 C25 A1AGU 21 A1AGU C26 C21 C 0 1 N N R N N N -22.244 -8.818 -1.744 10.120 -0.234 0.603 C26 A1AGU 22 A1AGU C18 C22 C 0 1 N N R N N N -20.701 3.496 5.484 -5.763 1.300 -0.016 C18 A1AGU 23 A1AGU C11 C23 C 0 1 N N N N N N -21.690 0.968 3.297 -2.675 0.593 -0.019 C11 A1AGU 24 A1AGU C20 C24 C 0 1 N N N N N N -21.835 -8.104 0.702 7.587 -0.025 0.611 C20 A1AGU 25 A1AGU C27 C25 C 0 1 N N N N N N -23.550 -8.953 -2.532 11.143 -0.243 -0.591 C27 A1AGU 26 A1AGU C4 C26 C 0 1 N N N N N N -22.735 -3.928 3.428 3.280 0.053 -0.417 C4 A1AGU 27 A1AGU C5 C27 C 0 1 N N N N N N -21.664 -1.937 2.704 0.948 0.235 0.057 C5 A1AGU 28 A1AGU N1 N1 N 0 1 N N N N N N -21.760 -0.970 1.775 -0.260 0.820 -0.071 N1 A1AGU 29 A1AGU N2 N2 N 0 1 N N N N N N -20.777 1.442 4.150 -3.785 -0.104 0.297 N2 A1AGU 30 A1AGU N3 N3 N 0 1 N N N N N N -21.219 -1.738 8.394 -4.278 -3.907 0.491 N3 A1AGU 31 A1AGU N4 N4 N 0 1 N N N N N N -22.260 -7.222 1.789 6.438 0.596 -0.054 N4 A1AGU 32 A1AGU O1 O2 O 0 1 N N N N N N -23.037 -8.820 3.264 6.350 2.510 1.160 O1 A1AGU 33 A1AGU O2 O3 O 0 1 N N N N N N -22.431 -2.997 2.372 2.010 0.734 -0.603 O2 A1AGU 34 A1AGU O3 O4 O 0 1 N N N N N N -19.088 -1.059 7.931 -2.925 -2.249 -0.262 O3 A1AGU 35 A1AGU O5 O5 O 0 1 N N N N N N -22.903 1.033 3.504 -2.711 1.419 -0.907 O5 A1AGU 36 A1AGU O6 O6 O 0 1 N N N N N N -20.964 -1.883 3.694 1.078 -0.741 0.769 O6 A1AGU 37 A1AGU H1 H1 H 0 1 N N N N N N -19.040 -0.074 0.394 -2.909 2.422 3.928 H1 A1AGU 38 A1AGU H2 H2 H 0 1 N N N N N N -18.895 0.257 -1.366 -3.480 0.995 4.825 H2 A1AGU 39 A1AGU H3 H3 H 0 1 N N N N N N -18.808 1.610 -0.186 -1.741 1.364 4.756 H3 A1AGU 40 A1AGU H4 H4 H 0 1 N N N N N N -19.366 1.158 6.363 -6.028 -1.386 0.729 H4 A1AGU 41 A1AGU H5 H5 H 0 1 N N N N N N -20.606 1.747 7.522 -6.862 -0.991 -0.793 H5 A1AGU 42 A1AGU H6 H6 H 0 1 N N N N N N -22.903 -6.978 -0.786 8.958 1.486 -0.120 H6 A1AGU 43 A1AGU H7 H7 H 0 1 N N N N N N -22.197 1.977 5.594 -4.741 0.181 -1.547 H7 A1AGU 44 A1AGU H8 H8 H 0 1 N N N N N N -23.326 -1.603 8.605 -6.270 -4.018 1.175 H8 A1AGU 45 A1AGU H9 H9 H 0 1 N N N N N N -22.762 -2.433 7.115 -5.731 -5.404 0.183 H9 A1AGU 46 A1AGU H10 H10 H 0 1 N N N N N N -21.788 -5.326 0.905 5.517 -1.067 -0.969 H10 A1AGU 47 A1AGU H11 H11 H 0 1 N N N N N N -23.530 -5.576 1.263 6.254 0.110 -2.098 H11 A1AGU 48 A1AGU H12 H12 H 0 1 N N N N N N -25.281 -10.047 -1.616 10.584 -1.395 -2.488 H12 A1AGU 49 A1AGU H13 H13 H 0 1 N N N N N N -20.073 0.195 2.132 -1.281 -0.721 0.921 H13 A1AGU 50 A1AGU H14 H14 H 0 1 N N N N N N -20.941 2.244 1.087 -0.470 0.977 2.573 H14 A1AGU 51 A1AGU H15 H15 H 0 1 N N N N N N -22.467 1.383 0.690 -1.601 2.160 1.874 H15 A1AGU 52 A1AGU H16 H16 H 0 1 N N N N N N -21.223 -0.158 -0.755 -3.488 0.571 2.382 H16 A1AGU 53 A1AGU H17 H17 H 0 1 N N N N N N -22.233 1.912 -1.649 -1.330 -0.921 3.940 H17 A1AGU 54 A1AGU H18 H18 H 0 1 N N N N N N -20.680 2.775 -1.385 -3.062 -1.324 3.879 H18 A1AGU 55 A1AGU H19 H19 H 0 1 N N N N N N -20.767 1.422 -2.564 -2.059 -1.490 2.418 H19 A1AGU 56 A1AGU H20 H20 H 0 1 N N N N N N -21.171 5.181 4.590 -5.546 0.902 1.958 H20 A1AGU 57 A1AGU H21 H21 H 0 1 N N N N N N -21.195 -5.366 3.234 4.040 0.886 -2.274 H21 A1AGU 58 A1AGU H22 H22 H 0 1 N N N N N N -23.999 -6.227 4.032 5.026 2.831 -1.378 H22 A1AGU 59 A1AGU H23 H23 H 0 1 N N N N N N -22.423 -6.581 4.818 3.914 2.505 -0.013 H23 A1AGU 60 A1AGU H24 H24 H 0 1 N N N N N N -20.896 -0.691 5.712 -4.958 -2.132 -2.037 H24 A1AGU 61 A1AGU H25 H25 H 0 1 N N N N N N -22.732 0.544 7.788 -6.013 -4.237 -1.843 H25 A1AGU 62 A1AGU H26 H26 H 0 1 N N N N N N -23.133 -0.259 6.233 -7.201 -3.305 -0.872 H26 A1AGU 63 A1AGU H27 H27 H 0 1 N N N N N N -24.938 -7.912 -0.307 8.033 -0.771 -1.737 H27 A1AGU 64 A1AGU H28 H28 H 0 1 N N N N N N -24.171 -9.158 0.735 9.037 0.618 -2.264 H28 A1AGU 65 A1AGU H29 H29 H 0 1 N N N N N N -23.446 -11.781 -0.809 9.642 -3.252 -0.819 H29 A1AGU 66 A1AGU H31 H31 H 0 1 N N N N N N -21.096 -10.737 -1.178 9.557 -2.283 1.572 H31 A1AGU 67 A1AGU H33 H33 H 0 1 N N N N N N -21.407 -8.348 -2.281 10.441 0.235 1.534 H33 A1AGU 68 A1AGU H34 H34 H 0 1 N N N N N N -20.930 3.869 6.493 -5.093 2.160 -0.022 H34 A1AGU 69 A1AGU S1 S1 S 0 1 N Y N N N N -19.668 3.556 5.212 -7.165 1.617 -1.122 S1 A1AGU 70 A1AGU H36 H36 H 0 1 N N N N N N -21.819 -9.139 1.073 7.489 -1.110 0.568 H36 A1AGU 71 A1AGU H37 H37 H 0 1 N N N N N N -20.823 -7.812 0.385 7.621 0.296 1.652 H37 A1AGU 72 A1AGU H38 H38 H 0 1 N N N N N N -24.015 -7.986 -2.775 12.066 -0.768 -0.346 H38 A1AGU 73 A1AGU H39 H39 H 0 1 N N N N N N -23.446 -9.550 -3.450 11.330 0.754 -0.989 H39 A1AGU 74 A1AGU H40 H40 H 0 1 N N N N N N -22.219 -3.616 4.348 3.189 -0.982 -0.747 H40 A1AGU 75 A1AGU H41 H41 H 0 1 N N N N N N -23.821 -3.939 3.602 3.553 0.076 0.637 H41 A1AGU 76 A1AGU H42 H42 H 0 1 N N N N N N -22.247 -1.146 0.919 -0.380 1.553 -0.694 H42 A1AGU 77 A1AGU H43 H43 H 0 1 N N N N N N -19.814 1.392 3.886 -3.775 -0.715 1.051 H43 A1AGU 78 A1AGU H44 H44 H 0 1 N N N N N N -21.012 -2.298 9.196 -3.637 -4.364 1.059 H44 A1AGU 79 A1AGU O8 O8 O 0 1 N Y N N N N ? ? ? -8.038 0.497 -1.155 O8 A1AGU 80 A1AGU O9 O9 O 0 1 N Y N N N N ? ? ? -7.668 2.932 -0.924 O9 A1AGU 81 A1AGU O7 O7 O 0 1 N Y N N N N ? ? ? -6.550 1.656 -2.513 O7 A1AGU 82 A1AGU H30 H30 H 0 1 N N N N N N ? ? ? -7.189 1.819 -3.221 H30 A1AGU 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGU C27 C26 SING N N 1 A1AGU C27 C23 SING N N 2 A1AGU C26 C25 SING N N 3 A1AGU C26 C21 SING N N 4 A1AGU C9 C8 SING N N 5 A1AGU C23 C24 SING N N 6 A1AGU C23 C22 SING N N 7 A1AGU C25 C24 DOUB N N 8 A1AGU C21 C22 SING N N 9 A1AGU C21 C20 SING N N 10 A1AGU C8 C10 SING N N 11 A1AGU C8 C7 SING N N 12 A1AGU C20 N4 SING N N 13 A1AGU C7 C6 SING N N 14 A1AGU C19 N4 SING N N 15 A1AGU C19 C3 SING N N 16 A1AGU N1 C6 SING N N 17 A1AGU N1 C5 SING N N 18 A1AGU N4 C1 SING N N 19 A1AGU C6 C11 SING N N 20 A1AGU O2 C5 SING N N 21 A1AGU O2 C4 SING N N 22 A1AGU C5 O6 DOUB N N 23 A1AGU C1 O1 DOUB N N 24 A1AGU C1 C2 SING N N 25 A1AGU C3 C4 SING N N 26 A1AGU C3 C2 SING N N 27 A1AGU C11 O5 DOUB N N 28 A1AGU C11 N2 SING N N 29 A1AGU N2 C12 SING N N 30 A1AGU O4 C18 SING N N 31 A1AGU C12 C18 SING N N 32 A1AGU C12 C13 SING N N 33 A1AGU C13 C14 SING N N 34 A1AGU C14 C17 SING N N 35 A1AGU C14 C15 SING N N 36 A1AGU C17 C16 SING N N 37 A1AGU C15 O3 DOUB N N 38 A1AGU C15 N3 SING N N 39 A1AGU C16 N3 SING N N 40 A1AGU C10 H1 SING N N 41 A1AGU C10 H2 SING N N 42 A1AGU C10 H3 SING N N 43 A1AGU C13 H4 SING N N 44 A1AGU C13 H5 SING N N 45 A1AGU C21 H6 SING N N 46 A1AGU C12 H7 SING N N 47 A1AGU C16 H8 SING N N 48 A1AGU C16 H9 SING N N 49 A1AGU C19 H10 SING N N 50 A1AGU C19 H11 SING N N 51 A1AGU C23 H12 SING N N 52 A1AGU C6 H13 SING N N 53 A1AGU C7 H14 SING N N 54 A1AGU C7 H15 SING N N 55 A1AGU C8 H16 SING N N 56 A1AGU C9 H17 SING N N 57 A1AGU C9 H18 SING N N 58 A1AGU C9 H19 SING N N 59 A1AGU O4 H20 SING N N 60 A1AGU C3 H21 SING N N 61 A1AGU C2 H22 SING N N 62 A1AGU C2 H23 SING N N 63 A1AGU C14 H24 SING N N 64 A1AGU C17 H25 SING N N 65 A1AGU C17 H26 SING N N 66 A1AGU C22 H27 SING N N 67 A1AGU C22 H28 SING N N 68 A1AGU C24 H29 SING N N 69 A1AGU C25 H31 SING N N 70 A1AGU C26 H33 SING N N 71 A1AGU C18 H34 SING N N 72 A1AGU C18 S1 SING N N 73 A1AGU C20 H36 SING N N 74 A1AGU C20 H37 SING N N 75 A1AGU C27 H38 SING N N 76 A1AGU C27 H39 SING N N 77 A1AGU C4 H40 SING N N 78 A1AGU C4 H41 SING N N 79 A1AGU N1 H42 SING N N 80 A1AGU N2 H43 SING N N 81 A1AGU N3 H44 SING N N 82 A1AGU S1 O8 DOUB N N 83 A1AGU S1 O9 DOUB N N 84 A1AGU S1 O7 SING N N 85 A1AGU O7 H30 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGU SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CC(=O)N(CC2CC3CC2C=C3)C1)C(O)S(=O)(=O)O" A1AGU InChI InChI 1.06 "InChI=1S/C27H42N4O9S/c1-15(2)7-21(25(34)29-22(26(35)41(37,38)39)11-19-5-6-28-24(19)33)30-27(36)40-14-17-10-23(32)31(12-17)13-20-9-16-3-4-18(20)8-16/h3-4,15-22,26,35H,5-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t16-,17+,18+,19+,20+,21+,22+,26-/m1/s1" A1AGU InChIKey InChI 1.06 QOJHUOHZVTVTCS-NWOQJEOISA-N A1AGU SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CN(C[C@@H]2C[C@H]3C[C@@H]2C=C3)C(=O)C1)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](O)[S](O)(=O)=O" A1AGU SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CN(C[CH]2C[CH]3C[CH]2C=C3)C(=O)C1)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" A1AGU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2CC(=O)N(C2)C[C@@H]3C[C@H]4C[C@@H]3C=C4" A1AGU SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC(=O)N(C2)CC3CC4CC3C=C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGU "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-{[N-({[(3S)-1-{[(1R,2R,4R)-bicyclo[2.2.1]hept-5-en-2-yl]methyl}-5-oxopyrrolidin-3-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGU "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(3~{S})-1-[[(1~{R},2~{R},4~{R})-2-bicyclo[2.2.1]hept-5-enyl]methyl]-5-oxidanylidene-pyrrolidin-3-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGU "Create component" 2024-02-29 RCSB A1AGU "Initial release" 2024-07-10 RCSB A1AGU "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGU _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #