data_A1AGV # _chem_comp.id A1AGV _chem_comp.name "(1S,2S)-2-{[N-({[(3S)-1-{[(1R,2R,4R)-bicyclo[2.2.1]hept-5-en-2-yl]methyl}-5-oxopyrrolidin-3-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H42 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 598.709 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGV C18 C1 C 0 1 N N S N N N -20.695 3.417 5.460 -5.357 -1.098 1.492 C18 A1AGV 1 A1AGV C16 C2 C 0 1 N N N N N N -22.565 -1.638 7.863 -6.321 4.531 0.662 C16 A1AGV 2 A1AGV C15 C3 C 0 1 N N N N N N -20.313 -1.055 7.784 -6.947 2.965 -0.936 C15 A1AGV 3 A1AGV C14 C4 C 0 1 N N S N N N -21.007 -0.241 6.711 -5.800 2.343 -0.170 C14 A1AGV 4 A1AGV C12 C5 C 0 1 N N S N N N -21.096 1.953 5.441 -4.968 0.298 1.000 C12 A1AGV 5 A1AGV C11 C6 C 0 1 N N N N N N -21.646 0.824 3.320 -2.575 -0.074 0.734 C11 A1AGV 6 A1AGV C10 C7 C 0 1 N N N N N N -19.268 0.638 -0.418 -2.770 -2.597 -2.796 C10 A1AGV 7 A1AGV C19 C8 C 0 1 N N N N N N -22.548 -5.777 1.624 5.864 0.716 0.941 C19 A1AGV 8 A1AGV C22 C9 C 0 1 N N N N N N -24.153 -8.727 -0.275 9.110 0.922 0.979 C22 A1AGV 9 A1AGV C6 C10 C 0 1 N N S N N N -21.113 0.253 2.004 -1.346 -0.217 -0.127 C6 A1AGV 10 A1AGV C7 C11 C 0 1 N N N N N N -21.371 1.216 0.848 -1.466 -1.482 -0.980 C7 A1AGV 11 A1AGV C8 C12 C 0 1 N N N N N N -20.775 0.797 -0.496 -2.585 -1.299 -2.008 C8 A1AGV 12 A1AGV C9 C13 C 0 1 N N N N N N -21.151 1.794 -1.580 -2.215 -0.167 -2.968 C9 A1AGV 13 A1AGV O4 O1 O 0 1 N N N N N N -21.240 4.094 6.576 -6.593 -1.025 2.205 O4 A1AGV 14 A1AGV C3 C14 C 0 1 N N S N N N -22.280 -5.361 3.069 4.534 0.110 1.440 C3 A1AGV 15 A1AGV C2 C15 C 0 1 N N N N N N -22.992 -6.466 3.865 4.865 -1.400 1.468 C2 A1AGV 16 A1AGV C17 C16 C 0 1 N N N N N N -22.471 -0.315 7.128 -5.698 3.193 1.118 C17 A1AGV 17 A1AGV C1 C17 C 0 1 N N N N N N -22.887 -7.677 2.973 5.982 -1.553 0.459 C1 A1AGV 18 A1AGV C21 C18 C 0 1 N N R N N N -22.785 -8.076 -0.524 8.954 -0.243 -0.030 C21 A1AGV 19 A1AGV C23 C19 C 0 1 N N R N N N -24.251 -9.776 -1.414 10.376 1.685 0.474 C23 A1AGV 20 A1AGV C24 C20 C 0 1 N N N N N N -23.227 -10.829 -1.104 9.946 2.271 -0.876 C24 A1AGV 21 A1AGV C25 C21 C 0 1 N N N N N N -22.033 -10.291 -1.281 9.814 1.281 -1.737 C25 A1AGV 22 A1AGV C26 C22 C 0 1 N N R N N N -22.237 -8.881 -1.741 10.145 -0.037 -1.019 C26 A1AGV 23 A1AGV C13 C23 C 0 1 N N N N N N -20.438 1.168 6.575 -6.115 0.885 0.175 C13 A1AGV 24 A1AGV C20 C24 C 0 1 N N N N N N -21.889 -8.092 0.708 7.617 -0.140 -0.768 C20 A1AGV 25 A1AGV C27 C25 C 0 1 N N N N N N -23.530 -9.036 -2.547 11.254 0.479 -0.025 C27 A1AGV 26 A1AGV C4 C26 C 0 1 N N N N N N -22.664 -3.960 3.471 3.397 0.403 0.460 C4 A1AGV 27 A1AGV C5 C27 C 0 1 N N N N N N -21.553 -2.031 2.658 1.036 0.106 0.270 C5 A1AGV 28 A1AGV N1 N1 N 0 1 N N N N N N -21.689 -1.054 1.746 -0.160 -0.315 0.727 N1 A1AGV 29 A1AGV N2 N2 N 0 1 N N N N N N -20.746 1.351 4.153 -3.765 0.205 0.168 N2 A1AGV 30 A1AGV N3 N3 N 0 1 N N N N N N -21.232 -1.756 8.444 -7.221 4.186 -0.446 N3 A1AGV 31 A1AGV N4 N4 N 0 1 N N N N N N -22.442 -7.240 1.761 6.519 -0.353 0.178 N4 A1AGV 32 A1AGV O1 O2 O 0 1 N N N N N N -23.135 -8.842 3.274 6.341 -2.605 -0.026 O1 A1AGV 33 A1AGV O2 O3 O 0 1 N N N N N N -22.387 -3.056 2.385 2.143 -0.076 1.014 O2 A1AGV 34 A1AGV O3 O4 O 0 1 N N N N N N -19.098 -1.080 7.990 -7.533 2.439 -1.858 O3 A1AGV 35 A1AGV O5 O5 O 0 1 N N N N N N -22.847 0.755 3.583 -2.491 -0.209 1.937 O5 A1AGV 36 A1AGV O6 O6 O 0 1 N N N N N N -20.771 -2.016 3.586 1.115 0.650 -0.813 O6 A1AGV 37 A1AGV H1 H1 H 0 1 N N N N N N -21.105 3.874 4.547 -4.578 -1.481 2.152 H1 A1AGV 38 A1AGV S1 S1 S 0 1 N Y N N N N -19.629 3.463 5.538 -5.544 -2.210 0.070 S1 A1AGV 39 A1AGV H3 H3 H 0 1 N N N N N N -23.340 -1.608 8.643 -6.885 4.983 1.478 H3 A1AGV 40 A1AGV H4 H4 H 0 1 N N N N N N -22.774 -2.466 7.170 -5.544 5.213 0.318 H4 A1AGV 41 A1AGV H5 H5 H 0 1 N N N N N N -20.892 -0.759 5.747 -4.877 2.409 -0.745 H5 A1AGV 42 A1AGV H6 H6 H 0 1 N N N N N N -22.186 1.895 5.575 -4.769 0.942 1.856 H6 A1AGV 43 A1AGV H7 H7 H 0 1 N N N N N N -19.016 -0.086 0.371 -3.033 -3.404 -2.112 H7 A1AGV 44 A1AGV H8 H8 H 0 1 N N N N N N -18.887 0.275 -1.384 -3.566 -2.467 -3.529 H8 A1AGV 45 A1AGV H9 H9 H 0 1 N N N N N N -18.809 1.610 -0.184 -1.841 -2.845 -3.310 H9 A1AGV 46 A1AGV H10 H10 H 0 1 N N N N N N -21.791 -5.375 0.935 5.670 1.574 0.298 H10 A1AGV 47 A1AGV H11 H11 H 0 1 N N N N N N -23.549 -5.469 1.289 6.485 1.011 1.787 H11 A1AGV 48 A1AGV H12 H12 H 0 1 N N N N N N -24.963 -7.986 -0.349 8.235 1.572 0.952 H12 A1AGV 49 A1AGV H13 H13 H 0 1 N N N N N N -24.187 -9.211 0.712 9.270 0.538 1.986 H13 A1AGV 50 A1AGV H14 H14 H 0 1 N N N N N N -20.024 0.141 2.107 -1.255 0.652 -0.777 H14 A1AGV 51 A1AGV H15 H15 H 0 1 N N N N N N -20.946 2.194 1.119 -0.524 -1.662 -1.497 H15 A1AGV 52 A1AGV H16 H16 H 0 1 N N N N N N -22.460 1.312 0.722 -1.697 -2.332 -0.338 H16 A1AGV 53 A1AGV H17 H17 H 0 1 N N N N N N -21.206 -0.178 -0.767 -3.513 -1.051 -1.494 H17 A1AGV 54 A1AGV H18 H18 H 0 1 N N N N N N -22.245 1.896 -1.622 -1.319 -0.441 -3.525 H18 A1AGV 55 A1AGV H19 H19 H 0 1 N N N N N N -20.700 2.771 -1.352 -3.038 0.002 -3.663 H19 A1AGV 56 A1AGV H20 H20 H 0 1 N N N N N N -20.779 1.437 -2.552 -2.026 0.744 -2.400 H20 A1AGV 57 A1AGV H21 H21 H 0 1 N N N N N N -20.970 5.005 6.557 -7.332 -0.692 1.678 H21 A1AGV 58 A1AGV H22 H22 H 0 1 N N N N N N -21.201 -5.474 3.248 4.289 0.475 2.438 H22 A1AGV 59 A1AGV H23 H23 H 0 1 N N N N N N -24.045 -6.203 4.046 5.205 -1.698 2.460 H23 A1AGV 60 A1AGV H24 H24 H 0 1 N N N N N N -22.488 -6.643 4.827 3.997 -1.987 1.170 H24 A1AGV 61 A1AGV H25 H25 H 0 1 N N N N N N -22.733 0.522 7.791 -4.658 3.329 1.414 H25 A1AGV 62 A1AGV H26 H26 H 0 1 N N N N N N -23.131 -0.307 6.248 -6.278 2.748 1.926 H26 A1AGV 63 A1AGV H27 H27 H 0 1 N N N N N N -22.941 -7.033 -0.838 9.036 -1.203 0.479 H27 A1AGV 64 A1AGV H28 H28 H 0 1 N N N N N N -25.266 -10.132 -1.644 10.834 2.379 1.179 H28 A1AGV 65 A1AGV H29 H29 H 0 1 N N N N N N -23.430 -11.843 -0.793 9.778 3.317 -1.086 H29 A1AGV 66 A1AGV H31 H31 H 0 1 N N N N N N -21.083 -10.780 -1.123 9.521 1.379 -2.771 H31 A1AGV 67 A1AGV H33 H33 H 0 1 N N N N N N -21.395 -8.413 -2.273 10.397 -0.884 -1.657 H33 A1AGV 68 A1AGV H34 H34 H 0 1 N N N N N N -19.359 1.096 6.375 -7.038 0.840 0.752 H34 A1AGV 69 A1AGV H35 H35 H 0 1 N N N N N N -20.601 1.708 7.520 -6.232 0.312 -0.745 H35 A1AGV 70 A1AGV H36 H36 H 0 1 N N N N N N -21.809 -9.123 1.083 7.525 0.850 -1.215 H36 A1AGV 71 A1AGV H37 H37 H 0 1 N N N N N N -20.890 -7.723 0.433 7.575 -0.897 -1.550 H37 A1AGV 72 A1AGV H38 H38 H 0 1 N N N N N N -23.999 -8.076 -2.808 12.158 0.804 -0.540 H38 A1AGV 73 A1AGV H39 H39 H 0 1 N N N N N N -23.407 -9.643 -3.456 11.468 -0.236 0.769 H39 A1AGV 74 A1AGV H40 H40 H 0 1 N N N N N N -22.083 -3.660 4.355 3.332 1.478 0.289 H40 A1AGV 75 A1AGV H41 H41 H 0 1 N N N N N N -23.737 -3.928 3.710 3.593 -0.103 -0.486 H41 A1AGV 76 A1AGV H42 H42 H 0 1 N N N N N N -22.184 -1.226 0.894 -0.235 -0.683 1.621 H42 A1AGV 77 A1AGV H43 H43 H 0 1 N N N N N N -19.783 1.334 3.884 -3.826 0.344 -0.790 H43 A1AGV 78 A1AGV H44 H44 H 0 1 N N N N N N -21.030 -2.306 9.254 -7.923 4.766 -0.781 H44 A1AGV 79 A1AGV O8 O8 O 0 1 N Y N N N N ? ? ? -6.607 -1.774 -0.766 O8 A1AGV 80 A1AGV O7 O7 O 0 1 N Y N N N N ? ? ? -4.274 -2.543 -0.473 O7 A1AGV 81 A1AGV O9 O9 O 0 1 N Y N N N N ? ? ? -6.050 -3.513 0.672 O9 A1AGV 82 A1AGV H2 H2 H 0 1 N N N N N N ? ? ? -6.199 -4.214 0.022 H2 A1AGV 83 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGV C27 C26 SING N N 1 A1AGV C27 C23 SING N N 2 A1AGV C26 C25 SING N N 3 A1AGV C26 C21 SING N N 4 A1AGV C9 C8 SING N N 5 A1AGV C23 C24 SING N N 6 A1AGV C23 C22 SING N N 7 A1AGV C25 C24 DOUB N N 8 A1AGV C21 C22 SING N N 9 A1AGV C21 C20 SING N N 10 A1AGV C8 C10 SING N N 11 A1AGV C8 C7 SING N N 12 A1AGV C20 N4 SING N N 13 A1AGV C7 C6 SING N N 14 A1AGV C19 N4 SING N N 15 A1AGV C19 C3 SING N N 16 A1AGV N1 C6 SING N N 17 A1AGV N1 C5 SING N N 18 A1AGV N4 C1 SING N N 19 A1AGV C6 C11 SING N N 20 A1AGV O2 C5 SING N N 21 A1AGV O2 C4 SING N N 22 A1AGV C5 O6 DOUB N N 23 A1AGV C1 O1 DOUB N N 24 A1AGV C1 C2 SING N N 25 A1AGV C3 C4 SING N N 26 A1AGV C3 C2 SING N N 27 A1AGV C11 O5 DOUB N N 28 A1AGV C11 N2 SING N N 29 A1AGV N2 C12 SING N N 30 A1AGV C12 C18 SING N N 31 A1AGV C12 C13 SING N N 32 A1AGV C18 O4 SING N N 33 A1AGV C13 C14 SING N N 34 A1AGV C14 C17 SING N N 35 A1AGV C14 C15 SING N N 36 A1AGV C17 C16 SING N N 37 A1AGV C15 O3 DOUB N N 38 A1AGV C15 N3 SING N N 39 A1AGV C16 N3 SING N N 40 A1AGV C18 H1 SING N N 41 A1AGV C18 S1 SING N N 42 A1AGV C16 H3 SING N N 43 A1AGV C16 H4 SING N N 44 A1AGV C14 H5 SING N N 45 A1AGV C12 H6 SING N N 46 A1AGV C10 H7 SING N N 47 A1AGV C10 H8 SING N N 48 A1AGV C10 H9 SING N N 49 A1AGV C19 H10 SING N N 50 A1AGV C19 H11 SING N N 51 A1AGV C22 H12 SING N N 52 A1AGV C22 H13 SING N N 53 A1AGV C6 H14 SING N N 54 A1AGV C7 H15 SING N N 55 A1AGV C7 H16 SING N N 56 A1AGV C8 H17 SING N N 57 A1AGV C9 H18 SING N N 58 A1AGV C9 H19 SING N N 59 A1AGV C9 H20 SING N N 60 A1AGV O4 H21 SING N N 61 A1AGV C3 H22 SING N N 62 A1AGV C2 H23 SING N N 63 A1AGV C2 H24 SING N N 64 A1AGV C17 H25 SING N N 65 A1AGV C17 H26 SING N N 66 A1AGV C21 H27 SING N N 67 A1AGV C23 H28 SING N N 68 A1AGV C24 H29 SING N N 69 A1AGV C25 H31 SING N N 70 A1AGV C26 H33 SING N N 71 A1AGV C13 H34 SING N N 72 A1AGV C13 H35 SING N N 73 A1AGV C20 H36 SING N N 74 A1AGV C20 H37 SING N N 75 A1AGV C27 H38 SING N N 76 A1AGV C27 H39 SING N N 77 A1AGV C4 H40 SING N N 78 A1AGV C4 H41 SING N N 79 A1AGV N1 H42 SING N N 80 A1AGV N2 H43 SING N N 81 A1AGV N3 H44 SING N N 82 A1AGV S1 O8 DOUB N N 83 A1AGV S1 O7 DOUB N N 84 A1AGV S1 O9 SING N N 85 A1AGV O9 H2 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGV SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CC(=O)N(CC2CC3CC2C=C3)C1)C(O)S(=O)(=O)O" A1AGV InChI InChI 1.06 "InChI=1S/C27H42N4O9S/c1-15(2)7-21(25(34)29-22(26(35)41(37,38)39)11-19-5-6-28-24(19)33)30-27(36)40-14-17-10-23(32)31(12-17)13-20-9-16-3-4-18(20)8-16/h3-4,15-22,26,35H,5-14H2,1-2H3,(H,28,33)(H,29,34)(H,30,36)(H,37,38,39)/t16-,17+,18+,19+,20+,21+,22+,26+/m1/s1" A1AGV InChIKey InChI 1.06 QOJHUOHZVTVTCS-MHJVTTCDSA-N A1AGV SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CN(C[C@@H]2C[C@H]3C[C@@H]2C=C3)C(=O)C1)C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@@H](O)[S](O)(=O)=O" A1AGV SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CN(C[CH]2C[CH]3C[CH]2C=C3)C(=O)C1)C(=O)N[CH](C[CH]4CCNC4=O)[CH](O)[S](O)(=O)=O" A1AGV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2CC(=O)N(C2)C[C@@H]3C[C@H]4C[C@@H]3C=C4" A1AGV SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC(=O)N(C2)CC3CC4CC3C=C4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGV "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-{[N-({[(3S)-1-{[(1R,2R,4R)-bicyclo[2.2.1]hept-5-en-2-yl]methyl}-5-oxopyrrolidin-3-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(3~{S})-1-[[(1~{R},2~{R},4~{R})-2-bicyclo[2.2.1]hept-5-enyl]methyl]-5-oxidanylidene-pyrrolidin-3-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGV "Create component" 2024-02-29 RCSB A1AGV "Initial release" 2024-07-10 RCSB A1AGV "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGV _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #