data_A1AGX # _chem_comp.id A1AGX _chem_comp.name "(1S,2S)-2-{[N-({[(2S)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9AT0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGX C11 C1 C 0 1 N N N N N N -21.662 -7.112 3.922 1.698 -1.684 1.255 C11 A1AGX 1 A1AGX C12 C2 C 0 1 N N N N N N -23.189 -7.006 4.016 0.834 -2.028 2.471 C12 A1AGX 2 A1AGX C13 C3 C 0 1 N N N N N N -23.626 -5.759 4.776 1.334 -3.331 3.099 C13 A1AGX 3 A1AGX C14 C4 C 0 1 N N N N N N -23.842 -8.187 4.718 0.927 -0.898 3.498 C14 A1AGX 4 A1AGX C15 C5 C 0 1 N N N N N N -19.429 -6.005 3.621 2.040 -0.039 -0.569 C15 A1AGX 5 A1AGX C17 C6 C 0 1 N N S N N N -17.265 -5.800 4.829 4.209 0.702 -1.396 C17 A1AGX 6 A1AGX C18 C7 C 0 1 N N N N N N -16.461 -4.417 4.892 5.320 1.597 -0.845 C18 A1AGX 7 A1AGX C10 C8 C 0 1 N N S N N N -20.958 -5.769 3.556 1.123 -0.451 0.554 C10 A1AGX 8 A1AGX C23 C9 C 0 1 N N N N N N -15.945 -4.221 2.316 5.838 3.897 0.068 C23 A1AGX 9 A1AGX C19 C10 C 0 1 N N S N N N -16.612 -3.637 3.575 4.720 2.925 -0.378 C19 A1AGX 10 A1AGX N21 N1 N 0 1 N N N N N N -15.011 -2.096 2.735 4.570 3.127 1.953 N21 A1AGX 11 A1AGX C22 C11 C 0 1 N N N N N N -14.783 -3.270 1.931 5.901 3.628 1.588 C22 A1AGX 12 A1AGX C02 C12 C 0 1 N N N N N N -24.464 -0.587 -1.111 -4.816 -0.836 -1.827 C02 A1AGX 13 A1AGX C03 C13 C 0 1 N N N N N N -24.950 -0.587 0.306 -4.308 -2.244 -1.611 C03 A1AGX 14 A1AGX C04 C14 C 0 1 N N N N N N -24.445 -1.955 0.835 -4.785 -2.605 -0.185 C04 A1AGX 15 A1AGX C05 C15 C 0 1 N N S N N N -23.149 -2.240 0.018 -4.924 -1.209 0.463 C05 A1AGX 16 A1AGX C06 C16 C 0 1 N N N N N N -22.705 -3.722 -0.025 -3.637 -0.837 1.201 C06 A1AGX 17 A1AGX C08 C17 C 0 1 N N N N N N -20.943 -4.188 1.653 -1.291 -0.672 0.797 C08 A1AGX 18 A1AGX C20 C18 C 0 1 N N N N N N -16.000 -2.243 3.665 3.887 2.721 0.868 C20 A1AGX 19 A1AGX C25 C19 C 0 1 N N S N N N -16.945 -6.614 6.127 4.827 -0.544 -2.034 C25 A1AGX 20 A1AGX C30 C20 C 0 1 N N N N N N -22.821 -1.767 -2.613 -5.697 1.072 -0.500 C30 A1AGX 21 A1AGX C31 C21 C 0 1 N N N N N N -21.352 -1.272 -2.832 -7.223 1.027 -0.594 C31 A1AGX 22 A1AGX C32 C22 C 0 1 N N N N N N -20.937 -0.220 -1.787 -7.778 2.453 -0.562 C32 A1AGX 23 A1AGX C33 C23 C 0 1 N N N N N N -19.505 0.281 -2.004 -9.305 2.408 -0.656 C33 A1AGX 24 A1AGX C34 C24 C 0 1 N N N N N N -19.296 0.850 -3.402 -9.866 1.615 0.526 C34 A1AGX 25 A1AGX C35 C25 C 0 1 N N N N N N -19.799 -0.107 -4.486 -9.311 0.190 0.493 C35 A1AGX 26 A1AGX C36 C26 C 0 1 N N N N N N -21.216 -0.645 -4.221 -7.785 0.234 0.588 C36 A1AGX 27 A1AGX N09 N2 N 0 1 N N N N N N -21.403 -5.370 2.220 -0.200 -0.770 0.012 N09 A1AGX 28 A1AGX N16 N3 N 0 1 N N N N N N -18.685 -5.612 4.733 3.317 0.301 -0.305 N16 A1AGX 29 A1AGX N29 N4 N 0 1 N N N N N N -23.458 -1.551 -1.292 -5.159 -0.282 -0.651 N29 A1AGX 30 A1AGX O01 O1 O 0 1 N N N N N N -24.924 0.140 -1.988 -4.897 -0.284 -2.904 O01 A1AGX 31 A1AGX O07 O2 O 0 1 N N N N N N -21.288 -3.873 0.359 -2.507 -0.965 0.299 O07 A1AGX 32 A1AGX O24 O3 O 0 1 N N N N N N -16.334 -1.360 4.448 2.766 2.258 0.886 O24 A1AGX 33 A1AGX O26 O4 O 0 1 N N N N N N -15.546 -6.638 6.174 5.784 -0.150 -3.019 O26 A1AGX 34 A1AGX O27 O5 O 0 1 N N N N N N -18.856 -6.517 2.669 1.629 -0.014 -1.709 O27 A1AGX 35 A1AGX O28 O6 O 0 1 N N N N N N -20.233 -3.419 2.300 -1.177 -0.320 1.954 O28 A1AGX 36 A1AGX H1 H1 H 0 1 N N N N N N -21.413 -7.855 3.150 2.717 -1.475 1.581 H1 A1AGX 37 A1AGX H2 H2 H 0 1 N N N N N N -21.278 -7.451 4.895 1.703 -2.526 0.563 H2 A1AGX 38 A1AGX H3 H3 H 0 1 N N N N N N -23.592 -6.946 2.994 -0.202 -2.150 2.157 H3 A1AGX 39 A1AGX H4 H4 H 0 1 N N N N N N -24.724 -5.722 4.820 2.371 -3.209 3.412 H4 A1AGX 40 A1AGX H5 H5 H 0 1 N N N N N N -23.219 -5.791 5.797 0.719 -3.576 3.965 H5 A1AGX 41 A1AGX H6 H6 H 0 1 N N N N N N -23.249 -4.864 4.259 1.268 -4.136 2.367 H6 A1AGX 42 A1AGX H7 H7 H 0 1 N N N N N N -24.932 -8.040 4.747 1.964 -0.776 3.812 H7 A1AGX 43 A1AGX H8 H8 H 0 1 N N N N N N -23.611 -9.112 4.170 0.571 0.030 3.051 H8 A1AGX 44 A1AGX H9 H9 H 0 1 N N N N N N -23.455 -8.263 5.745 0.312 -1.143 4.364 H9 A1AGX 45 A1AGX H10 H10 H 0 1 N N N N N N -16.898 -6.368 3.962 3.640 1.250 -2.148 H10 A1AGX 46 A1AGX H11 H11 H 0 1 N N N N N N -15.395 -4.627 5.067 5.803 1.101 -0.003 H11 A1AGX 47 A1AGX H12 H12 H 0 1 N N N N N N -16.855 -3.808 5.719 6.056 1.786 -1.626 H12 A1AGX 48 A1AGX H13 H13 H 0 1 N N N N N N -21.237 -5.005 4.296 1.036 0.366 1.270 H13 A1AGX 49 A1AGX H14 H14 H 0 1 N N N N N N -16.674 -4.277 1.494 6.785 3.648 -0.411 H14 A1AGX 50 A1AGX H15 H15 H 0 1 N N N N N N -15.554 -5.227 2.529 5.560 4.931 -0.134 H15 A1AGX 51 A1AGX H16 H16 H 0 1 N N N N N N -17.687 -3.526 3.368 4.120 3.373 -1.169 H16 A1AGX 52 A1AGX H17 H17 H 0 1 N N N N N N -14.491 -1.249 2.622 4.227 3.094 2.859 H17 A1AGX 53 A1AGX H18 H18 H 0 1 N N N N N N -13.810 -3.725 2.170 6.659 2.876 1.808 H18 A1AGX 54 A1AGX H19 H19 H 0 1 N N N N N N -14.819 -3.023 0.860 6.117 4.551 2.126 H19 A1AGX 55 A1AGX H20 H20 H 0 1 N N N N N N -24.512 0.246 0.876 -4.745 -2.924 -2.343 H20 A1AGX 56 A1AGX H21 H21 H 0 1 N N N N N N -26.047 -0.525 0.350 -3.220 -2.270 -1.668 H21 A1AGX 57 A1AGX H22 H22 H 0 1 N N N N N N -25.195 -2.740 0.659 -5.745 -3.120 -0.213 H22 A1AGX 58 A1AGX H23 H23 H 0 1 N N N N N N -24.221 -1.896 1.910 -4.038 -3.204 0.336 H23 A1AGX 59 A1AGX H24 H24 H 0 1 N N N N N N -22.338 -1.676 0.502 -5.771 -1.195 1.150 H24 A1AGX 60 A1AGX H25 H25 H 0 1 N N N N N N -23.328 -4.302 0.672 -3.706 0.191 1.555 H25 A1AGX 61 A1AGX H26 H26 H 0 1 N N N N N N -22.842 -4.107 -1.046 -3.500 -1.506 2.052 H26 A1AGX 62 A1AGX H27 H27 H 0 1 N N N N N N -17.292 -7.639 5.931 4.043 -1.138 -2.505 H27 A1AGX 63 A1AGX S1 S1 S 0 1 N Y N N N N -17.378 -6.177 7.003 5.648 -1.533 -0.754 S1 A1AGX 64 A1AGX H29 H29 H 0 1 N N N N N N -23.448 -1.260 -3.361 -5.303 1.710 -1.291 H29 A1AGX 65 A1AGX H30 H30 H 0 1 N N N N N N -22.829 -2.851 -2.802 -5.405 1.473 0.470 H30 A1AGX 66 A1AGX H31 H31 H 0 1 N N N N N N -20.675 -2.136 -2.759 -7.516 0.545 -1.527 H31 A1AGX 67 A1AGX H32 H32 H 0 1 N N N N N N -21.625 0.636 -1.854 -7.486 2.935 0.371 H32 A1AGX 68 A1AGX H33 H33 H 0 1 N N N N N N -21.007 -0.669 -0.785 -7.378 3.017 -1.404 H33 A1AGX 69 A1AGX H34 H34 H 0 1 N N N N N N -18.810 -0.559 -1.857 -9.700 3.424 -0.633 H34 A1AGX 70 A1AGX H35 H35 H 0 1 N N N N N N -19.290 1.068 -1.266 -9.597 1.926 -1.589 H35 A1AGX 71 A1AGX H36 H36 H 0 1 N N N N N N -18.222 1.030 -3.556 -9.573 2.098 1.459 H36 A1AGX 72 A1AGX H37 H37 H 0 1 N N N N N N -19.843 1.801 -3.485 -10.953 1.584 0.459 H37 A1AGX 73 A1AGX H38 H38 H 0 1 N N N N N N -19.108 -0.961 -4.545 -9.711 -0.375 1.336 H38 A1AGX 74 A1AGX H39 H39 H 0 1 N N N N N N -19.804 0.428 -5.447 -9.604 -0.293 -0.439 H39 A1AGX 75 A1AGX H40 H40 H 0 1 N N N N N N -21.931 0.187 -4.305 -7.390 -0.781 0.565 H40 A1AGX 76 A1AGX H41 H41 H 0 1 N N N N N N -21.451 -1.408 -4.978 -7.492 0.717 1.520 H41 A1AGX 77 A1AGX H42 H42 H 0 1 N N N N N N -22.041 -5.950 1.713 -0.291 -1.051 -0.912 H42 A1AGX 78 A1AGX H43 H43 H 0 1 N N N N N N -19.162 -5.180 5.498 3.646 0.282 0.607 H43 A1AGX 79 A1AGX H44 H44 H 0 1 N N N N N N -15.263 -7.119 6.942 5.414 0.383 -3.736 H44 A1AGX 80 A1AGX O3 O7 O 0 1 N Y N N N N ? ? ? 5.971 -2.824 -1.253 O3 A1AGX 81 A1AGX O1 O8 O 0 1 N Y N N N N ? ? ? 6.613 -0.752 -0.063 O1 A1AGX 82 A1AGX O2 O9 O 0 1 N Y N N N N ? ? ? 4.563 -1.791 0.281 O2 A1AGX 83 A1AGX H28 H28 H 0 1 N N N N N N ? ? ? 4.858 -2.317 1.038 H28 A1AGX 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGX C35 C36 SING N N 1 A1AGX C35 C34 SING N N 2 A1AGX C36 C31 SING N N 3 A1AGX C34 C33 SING N N 4 A1AGX C31 C30 SING N N 5 A1AGX C31 C32 SING N N 6 A1AGX C30 N29 SING N N 7 A1AGX C33 C32 SING N N 8 A1AGX O01 C02 DOUB N N 9 A1AGX N29 C02 SING N N 10 A1AGX N29 C05 SING N N 11 A1AGX C02 C03 SING N N 12 A1AGX C06 C05 SING N N 13 A1AGX C06 O07 SING N N 14 A1AGX C05 C04 SING N N 15 A1AGX C03 C04 SING N N 16 A1AGX O07 C08 SING N N 17 A1AGX C08 N09 SING N N 18 A1AGX C08 O28 DOUB N N 19 A1AGX C22 C23 SING N N 20 A1AGX C22 N21 SING N N 21 A1AGX N09 C10 SING N N 22 A1AGX C23 C19 SING N N 23 A1AGX O27 C15 DOUB N N 24 A1AGX N21 C20 SING N N 25 A1AGX C10 C15 SING N N 26 A1AGX C10 C11 SING N N 27 A1AGX C19 C20 SING N N 28 A1AGX C19 C18 SING N N 29 A1AGX C15 N16 SING N N 30 A1AGX C20 O24 DOUB N N 31 A1AGX C11 C12 SING N N 32 A1AGX C12 C14 SING N N 33 A1AGX C12 C13 SING N N 34 A1AGX N16 C17 SING N N 35 A1AGX C17 C18 SING N N 36 A1AGX C17 C25 SING N N 37 A1AGX C25 O26 SING N N 38 A1AGX C11 H1 SING N N 39 A1AGX C11 H2 SING N N 40 A1AGX C12 H3 SING N N 41 A1AGX C13 H4 SING N N 42 A1AGX C13 H5 SING N N 43 A1AGX C13 H6 SING N N 44 A1AGX C14 H7 SING N N 45 A1AGX C14 H8 SING N N 46 A1AGX C14 H9 SING N N 47 A1AGX C17 H10 SING N N 48 A1AGX C18 H11 SING N N 49 A1AGX C18 H12 SING N N 50 A1AGX C10 H13 SING N N 51 A1AGX C23 H14 SING N N 52 A1AGX C23 H15 SING N N 53 A1AGX C19 H16 SING N N 54 A1AGX N21 H17 SING N N 55 A1AGX C22 H18 SING N N 56 A1AGX C22 H19 SING N N 57 A1AGX C03 H20 SING N N 58 A1AGX C03 H21 SING N N 59 A1AGX C04 H22 SING N N 60 A1AGX C04 H23 SING N N 61 A1AGX C05 H24 SING N N 62 A1AGX C06 H25 SING N N 63 A1AGX C06 H26 SING N N 64 A1AGX C25 H27 SING N N 65 A1AGX C25 S1 SING N N 66 A1AGX C30 H29 SING N N 67 A1AGX C30 H30 SING N N 68 A1AGX C31 H31 SING N N 69 A1AGX C32 H32 SING N N 70 A1AGX C32 H33 SING N N 71 A1AGX C33 H34 SING N N 72 A1AGX C33 H35 SING N N 73 A1AGX C34 H36 SING N N 74 A1AGX C34 H37 SING N N 75 A1AGX C35 H38 SING N N 76 A1AGX C35 H39 SING N N 77 A1AGX C36 H40 SING N N 78 A1AGX C36 H41 SING N N 79 A1AGX N09 H42 SING N N 80 A1AGX N16 H43 SING N N 81 A1AGX O26 H44 SING N N 82 A1AGX S1 O3 DOUB N N 83 A1AGX S1 O1 DOUB N N 84 A1AGX S1 O2 SING N N 85 A1AGX O2 H28 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGX SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CCCCC1)C(O)S(=O)(=O)O" A1AGX InChI InChI 1.06 "InChI=1S/C26H44N4O9S/c1-16(2)12-20(24(33)28-21(25(34)40(36,37)38)13-18-10-11-27-23(18)32)29-26(35)39-15-19-8-9-22(31)30(19)14-17-6-4-3-5-7-17/h16-21,25,34H,3-15H2,1-2H3,(H,27,32)(H,28,33)(H,29,35)(H,36,37,38)/t18-,19-,20-,21-,25-/m0/s1" A1AGX InChIKey InChI 1.06 UDXIYOCRUKPXES-SQDATOHTSA-N A1AGX SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@@H]1CCC(=O)N1CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" A1AGX SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1CC2CCCCC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@@H]2CCC(=O)N2CC3CCCCC3" A1AGX SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CCCCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGX "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-{[N-({[(2S)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGX "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-1-(cyclohexylmethyl)-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGX "Create component" 2024-02-29 RCSB A1AGX "Initial release" 2024-07-10 RCSB A1AGX "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGX _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #