data_A1AGY # _chem_comp.id A1AGY _chem_comp.name "(1R,2S)-2-{[N-({[(2R)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGY C10 C1 C 0 1 N N S N N N 2.176 -11.648 -2.398 0.949 -0.019 0.308 C10 A1AGY 1 A1AGY C02 C2 C 0 1 N N N N N N 3.138 -4.674 0.907 -5.697 0.997 -1.965 C02 A1AGY 2 A1AGY C03 C3 C 0 1 N N N N N N 4.604 -4.772 1.223 -5.379 2.432 -2.325 C03 A1AGY 3 A1AGY C04 C4 C 0 1 N N N N N N 5.127 -5.768 0.188 -4.421 2.900 -1.204 C04 A1AGY 4 A1AGY C05 C5 C 0 1 N N R N N N 3.895 -6.632 -0.075 -4.806 1.954 -0.045 C05 A1AGY 5 A1AGY C06 C6 C 0 1 N N N N N N 3.996 -7.455 -1.349 -3.570 1.585 0.779 C06 A1AGY 6 A1AGY C08 C7 C 0 1 N N N N N N 2.910 -9.578 -1.347 -1.361 0.738 0.465 C08 A1AGY 7 A1AGY C11 C8 C 0 1 N N N N N N 1.189 -12.085 -3.480 0.946 -1.461 0.820 C11 A1AGY 8 A1AGY C12 C9 C 0 1 N N N N N N -0.275 -11.762 -3.185 2.181 -1.694 1.693 C12 A1AGY 9 A1AGY C13 C10 C 0 1 N N N N N N -0.745 -12.477 -1.929 2.079 -0.842 2.959 C13 A1AGY 10 A1AGY C14 C11 C 0 1 N N N N N N -1.159 -12.130 -4.367 2.261 -3.173 2.078 C14 A1AGY 11 A1AGY C15 C12 C 0 1 N N N N N N 3.598 -12.097 -2.742 2.037 0.146 -0.722 C15 A1AGY 12 A1AGY C17 C13 C 0 1 N N S N N N 5.386 -13.749 -2.350 4.374 0.495 -1.318 C17 A1AGY 13 A1AGY C18 C14 C 0 1 N N N N N N 6.192 -13.632 -1.055 5.584 1.107 -0.609 C18 A1AGY 14 A1AGY C19 C15 C 0 1 N N S N N N 6.495 -12.180 -0.684 5.195 2.464 -0.017 C19 A1AGY 15 A1AGY C20 C16 C 0 1 N N N N N N 7.295 -12.022 0.597 4.182 2.287 1.093 C20 A1AGY 16 A1AGY C22 C17 C 0 1 N N N N N N 8.048 -10.365 -0.853 6.220 2.658 2.143 C22 A1AGY 17 A1AGY C23 C18 C 0 1 N N N N N N 7.316 -11.395 -1.700 6.410 3.118 0.680 C23 A1AGY 18 A1AGY C25 C19 C 0 1 N N R N N N 5.341 -15.190 -2.823 4.794 -0.800 -2.015 C25 A1AGY 19 A1AGY C30 C20 C 0 1 N N N N N N 1.662 -5.614 -0.842 -5.535 -0.535 -0.015 C30 A1AGY 20 A1AGY C31 C21 C 0 1 N N N N N N 1.399 -4.293 -1.553 -6.916 -0.592 0.642 C31 A1AGY 21 A1AGY C32 C22 C 0 1 N N N N N N 0.069 -4.316 -2.287 -7.045 -1.888 1.445 C32 A1AGY 22 A1AGY C33 C23 C 0 1 N N N N N N -0.195 -2.995 -3.008 -8.425 -1.946 2.102 C33 A1AGY 23 A1AGY C34 C24 C 0 1 N N N N N N 0.931 -2.665 -3.968 -9.507 -1.906 1.021 C34 A1AGY 24 A1AGY C35 C25 C 0 1 N N N N N N 2.261 -2.634 -3.240 -9.378 -0.609 0.218 C35 A1AGY 25 A1AGY C36 C26 C 0 1 N N N N N N 2.524 -3.954 -2.518 -7.997 -0.552 -0.439 C36 A1AGY 26 A1AGY N09 N1 N 0 1 N N N N N N 2.082 -10.214 -2.193 -0.348 0.286 -0.300 N09 A1AGY 27 A1AGY N16 N2 N 0 1 N N N N N N 4.037 -13.215 -2.154 3.327 0.204 -0.335 N16 A1AGY 28 A1AGY N21 N3 N 0 1 N N N N N N 8.209 -11.072 0.413 4.782 2.406 2.290 N21 A1AGY 29 A1AGY N29 N4 N 0 1 N N N N N N 2.858 -5.596 -0.014 -5.366 0.757 -0.684 N29 A1AGY 30 A1AGY O01 O1 O 0 1 N N N N N N 2.326 -3.900 1.409 -6.184 0.183 -2.720 O01 A1AGY 31 A1AGY O07 O2 O 0 1 N N N N N N 2.795 -8.242 -1.502 -2.523 1.107 -0.106 O07 A1AGY 32 A1AGY O24 O3 O 0 1 N N N N N N 7.106 -12.650 1.655 3.000 2.069 0.926 O24 A1AGY 33 A1AGY O26 O4 O 0 1 N N N N N N 4.744 -15.278 -4.106 3.695 -1.311 -2.773 O26 A1AGY 34 A1AGY O27 O5 O 0 1 N N N N N N 4.296 -11.429 -3.499 1.753 0.227 -1.898 O27 A1AGY 35 A1AGY O28 O6 O 0 1 N N N N N N 3.622 -10.118 -0.530 -1.226 0.814 1.670 O28 A1AGY 36 A1AGY H1 H1 H 0 1 N N N N N N 1.887 -12.153 -1.464 1.130 0.662 1.140 H1 A1AGY 37 A1AGY H2 H2 H 0 1 N N N N N N 4.762 -5.148 2.245 -4.884 2.481 -3.295 H2 A1AGY 38 A1AGY H3 H3 H 0 1 N N N N N N 5.096 -3.795 1.112 -6.287 3.034 -2.329 H3 A1AGY 39 A1AGY H4 H4 H 0 1 N N N N N N 5.956 -6.367 0.593 -3.381 2.758 -1.495 H4 A1AGY 40 A1AGY H5 H5 H 0 1 N N N N N N 5.458 -5.256 -0.727 -4.611 3.940 -0.939 H5 A1AGY 41 A1AGY H6 H6 H 0 1 N N N N N N 3.767 -7.320 0.774 -5.555 2.429 0.589 H6 A1AGY 42 A1AGY H7 H7 H 0 1 N N N N N N 4.868 -8.123 -1.288 -3.217 2.464 1.318 H7 A1AGY 43 A1AGY H8 H8 H 0 1 N N N N N N 4.108 -6.783 -2.213 -3.830 0.802 1.491 H8 A1AGY 44 A1AGY H9 H9 H 0 1 N N N N N N 1.280 -13.174 -3.605 0.046 -1.635 1.410 H9 A1AGY 45 A1AGY H10 H10 H 0 1 N N N N N N 1.467 -11.583 -4.419 0.964 -2.147 -0.026 H10 A1AGY 46 A1AGY H11 H11 H 0 1 N N N N N N -0.359 -10.678 -3.016 3.076 -1.414 1.138 H11 A1AGY 47 A1AGY H12 H12 H 0 1 N N N N N N -0.096 -12.201 -1.085 1.197 -1.138 3.526 H12 A1AGY 48 A1AGY H13 H13 H 0 1 N N N N N N -1.781 -12.184 -1.706 2.970 -0.991 3.570 H13 A1AGY 49 A1AGY H14 H14 H 0 1 N N N N N N -0.698 -13.565 -2.087 1.999 0.210 2.684 H14 A1AGY 50 A1AGY H15 H15 H 0 1 N N N N N N -2.206 -11.889 -4.132 2.334 -3.780 1.176 H15 A1AGY 51 A1AGY H16 H16 H 0 1 N N N N N N -0.842 -11.560 -5.253 3.141 -3.339 2.700 H16 A1AGY 52 A1AGY H17 H17 H 0 1 N N N N N N -1.068 -13.207 -4.571 1.366 -3.453 2.633 H17 A1AGY 53 A1AGY H18 H18 H 0 1 N N N N N N 5.895 -13.152 -3.121 3.992 1.199 -2.058 H18 A1AGY 54 A1AGY H19 H19 H 0 1 N N N N N N 5.616 -14.092 -0.238 5.911 0.442 0.191 H19 A1AGY 55 A1AGY H20 H20 H 0 1 N N N N N N 7.143 -14.170 -1.182 6.395 1.242 -1.324 H20 A1AGY 56 A1AGY H21 H21 H 0 1 N N N N N N 5.535 -11.659 -0.551 4.800 3.118 -0.793 H21 A1AGY 57 A1AGY H22 H22 H 0 1 N N N N N N 9.022 -10.106 -1.293 6.784 1.744 2.327 H22 A1AGY 58 A1AGY H23 H23 H 0 1 N N N N N N 7.448 -9.452 -0.727 6.538 3.442 2.830 H23 A1AGY 59 A1AGY H24 H24 H 0 1 N N N N N N 6.663 -10.904 -2.437 7.346 2.738 0.271 H24 A1AGY 60 A1AGY H25 H25 H 0 1 N N N N N N 8.028 -12.052 -2.221 6.365 4.205 0.604 H25 A1AGY 61 A1AGY H26 H26 H 0 1 N N N N N N 6.383 -15.531 -2.907 5.633 -0.599 -2.682 H26 A1AGY 62 A1AGY S1 S1 S 0 1 N Y N N N N 4.747 -15.754 -2.134 5.290 -2.024 -0.771 S1 A1AGY 63 A1AGY H28 H28 H 0 1 N N N N N N 0.798 -5.843 -0.201 -4.765 -0.653 0.747 H28 A1AGY 64 A1AGY H29 H29 H 0 1 N N N N N N 1.775 -6.402 -1.601 -5.448 -1.337 -0.747 H29 A1AGY 65 A1AGY H30 H30 H 0 1 N N N N N N 1.354 -3.501 -0.791 -7.036 0.262 1.309 H30 A1AGY 66 A1AGY H31 H31 H 0 1 N N N N N N -0.737 -4.494 -1.560 -6.924 -2.742 0.778 H31 A1AGY 67 A1AGY H32 H32 H 0 1 N N N N N N 0.083 -5.130 -3.026 -6.274 -1.917 2.215 H32 A1AGY 68 A1AGY H33 H33 H 0 1 N N N N N N -0.280 -2.190 -2.263 -8.517 -2.869 2.674 H33 A1AGY 69 A1AGY H34 H34 H 0 1 N N N N N N -1.136 -3.075 -3.572 -8.546 -1.092 2.769 H34 A1AGY 70 A1AGY H35 H35 H 0 1 N N N N N N 0.743 -1.680 -4.420 -9.386 -2.759 0.354 H35 A1AGY 71 A1AGY H36 H36 H 0 1 N N N N N N 0.969 -3.430 -4.758 -10.490 -1.946 1.489 H36 A1AGY 72 A1AGY H37 H37 H 0 1 N N N N N N 3.065 -2.457 -3.969 -10.148 -0.581 -0.552 H37 A1AGY 73 A1AGY H38 H38 H 0 1 N N N N N N 2.248 -1.818 -2.503 -9.498 0.244 0.885 H38 A1AGY 74 A1AGY H39 H39 H 0 1 N N N N N N 2.611 -4.758 -3.263 -7.905 0.371 -1.011 H39 A1AGY 75 A1AGY H40 H40 H 0 1 N N N N N N 3.466 -3.873 -1.955 -7.876 -1.406 -1.106 H40 A1AGY 76 A1AGY H41 H41 H 0 1 N N N N N N 1.390 -9.691 -2.690 -0.478 0.162 -1.254 H41 A1AGY 77 A1AGY H42 H42 H 0 1 N N N N N N 3.413 -13.711 -1.550 3.563 0.052 0.594 H42 A1AGY 78 A1AGY H43 H43 H 0 1 N N N N N N 8.931 -10.865 1.073 4.323 2.334 3.141 H43 A1AGY 79 A1AGY H44 H44 H 0 1 N N N N N N 4.725 -16.186 -4.385 2.912 -1.513 -2.243 H44 A1AGY 80 A1AGY O1 O7 O 0 1 N Y N N N N ? ? ? 6.497 -1.626 -0.134 O1 A1AGY 81 A1AGY O3 O8 O 0 1 N Y N N N N ? ? ? 4.166 -2.447 -0.012 O3 A1AGY 82 A1AGY O2 O9 O 0 1 N Y N N N N ? ? ? 5.680 -3.252 -1.580 O2 A1AGY 83 A1AGY H27 H27 H 0 1 N N N N N N ? ? ? 5.972 -4.001 -1.043 H27 A1AGY 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGY C14 C12 SING N N 1 A1AGY O26 C25 SING N N 2 A1AGY C34 C35 SING N N 3 A1AGY C34 C33 SING N N 4 A1AGY O27 C15 DOUB N N 5 A1AGY C11 C12 SING N N 6 A1AGY C11 C10 SING N N 7 A1AGY C35 C36 SING N N 8 A1AGY C12 C13 SING N N 9 A1AGY C33 C32 SING N N 10 A1AGY C25 C17 SING N N 11 A1AGY C15 C10 SING N N 12 A1AGY C15 N16 SING N N 13 A1AGY C36 C31 SING N N 14 A1AGY C10 N09 SING N N 15 A1AGY C17 N16 SING N N 16 A1AGY C17 C18 SING N N 17 A1AGY C32 C31 SING N N 18 A1AGY N09 C08 SING N N 19 A1AGY C23 C22 SING N N 20 A1AGY C23 C19 SING N N 21 A1AGY C31 C30 SING N N 22 A1AGY O07 C06 SING N N 23 A1AGY O07 C08 SING N N 24 A1AGY C06 C05 SING N N 25 A1AGY C08 O28 DOUB N N 26 A1AGY C18 C19 SING N N 27 A1AGY C22 N21 SING N N 28 A1AGY C30 N29 SING N N 29 A1AGY C19 C20 SING N N 30 A1AGY C05 N29 SING N N 31 A1AGY C05 C04 SING N N 32 A1AGY N29 C02 SING N N 33 A1AGY C04 C03 SING N N 34 A1AGY N21 C20 SING N N 35 A1AGY C20 O24 DOUB N N 36 A1AGY C02 C03 SING N N 37 A1AGY C02 O01 DOUB N N 38 A1AGY C10 H1 SING N N 39 A1AGY C03 H2 SING N N 40 A1AGY C03 H3 SING N N 41 A1AGY C04 H4 SING N N 42 A1AGY C04 H5 SING N N 43 A1AGY C05 H6 SING N N 44 A1AGY C06 H7 SING N N 45 A1AGY C06 H8 SING N N 46 A1AGY C11 H9 SING N N 47 A1AGY C11 H10 SING N N 48 A1AGY C12 H11 SING N N 49 A1AGY C13 H12 SING N N 50 A1AGY C13 H13 SING N N 51 A1AGY C13 H14 SING N N 52 A1AGY C14 H15 SING N N 53 A1AGY C14 H16 SING N N 54 A1AGY C14 H17 SING N N 55 A1AGY C17 H18 SING N N 56 A1AGY C18 H19 SING N N 57 A1AGY C18 H20 SING N N 58 A1AGY C19 H21 SING N N 59 A1AGY C22 H22 SING N N 60 A1AGY C22 H23 SING N N 61 A1AGY C23 H24 SING N N 62 A1AGY C23 H25 SING N N 63 A1AGY C25 H26 SING N N 64 A1AGY C25 S1 SING N N 65 A1AGY C30 H28 SING N N 66 A1AGY C30 H29 SING N N 67 A1AGY C31 H30 SING N N 68 A1AGY C32 H31 SING N N 69 A1AGY C32 H32 SING N N 70 A1AGY C33 H33 SING N N 71 A1AGY C33 H34 SING N N 72 A1AGY C34 H35 SING N N 73 A1AGY C34 H36 SING N N 74 A1AGY C35 H37 SING N N 75 A1AGY C35 H38 SING N N 76 A1AGY C36 H39 SING N N 77 A1AGY C36 H40 SING N N 78 A1AGY N09 H41 SING N N 79 A1AGY N16 H42 SING N N 80 A1AGY N21 H43 SING N N 81 A1AGY O26 H44 SING N N 82 A1AGY S1 O1 DOUB N N 83 A1AGY S1 O3 DOUB N N 84 A1AGY S1 O2 SING N N 85 A1AGY O2 H27 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGY SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CCCCC1)C(O)S(=O)(=O)O" A1AGY InChI InChI 1.06 "InChI=1S/C26H44N4O9S/c1-16(2)12-20(24(33)28-21(25(34)40(36,37)38)13-18-10-11-27-23(18)32)29-26(35)39-15-19-8-9-22(31)30(19)14-17-6-4-3-5-7-17/h16-21,25,34H,3-15H2,1-2H3,(H,27,32)(H,28,33)(H,29,35)(H,36,37,38)/t18-,19+,20-,21-,25+/m0/s1" A1AGY InChIKey InChI 1.06 UDXIYOCRUKPXES-QQQKFWQGSA-N A1AGY SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1CCC(=O)N1CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O" A1AGY SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1CC2CCCCC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2CCC(=O)N2CC3CCCCC3" A1AGY SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CCCCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGY "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-2-{[N-({[(2R)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{R})-1-(cyclohexylmethyl)-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGY "Create component" 2024-02-29 RCSB A1AGY "Initial release" 2024-07-10 RCSB A1AGY "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGY _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #