data_A1AGZ # _chem_comp.id A1AGZ _chem_comp.name "(1S,2S)-2-{[N-({[(2R)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H44 N4 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2024-02-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.714 _chem_comp.one_letter_code ? _chem_comp.three_letter_code A1AGZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 9ATT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal A1AGZ C10 C1 C 0 1 N N S N N N 2.133 -11.695 -2.447 0.880 -0.084 0.313 C10 A1AGZ 1 A1AGZ C02 C2 C 0 1 N N N N N N 3.125 -4.741 0.848 -5.743 1.131 -1.929 C02 A1AGZ 2 A1AGZ C03 C3 C 0 1 N N N N N N 4.591 -4.824 1.171 -5.416 2.586 -2.180 C03 A1AGZ 3 A1AGZ C04 C4 C 0 1 N N N N N N 5.127 -5.824 0.146 -4.465 2.967 -1.021 C04 A1AGZ 4 A1AGZ C05 C5 C 0 1 N N R N N N 3.902 -6.700 -0.116 -4.863 1.940 0.062 C05 A1AGZ 5 A1AGZ C06 C6 C 0 1 N N N N N N 4.021 -7.545 -1.373 -3.635 1.505 0.866 C06 A1AGZ 6 A1AGZ C08 C7 C 0 1 N N N N N N 2.888 -9.643 -1.383 -1.428 0.673 0.507 C08 A1AGZ 7 A1AGZ C11 C8 C 0 1 N N N N N N 1.144 -12.122 -3.529 0.864 -1.558 0.722 C11 A1AGZ 8 A1AGZ C12 C9 C 0 1 N N N N N N -0.325 -11.861 -3.202 2.108 -1.870 1.555 C12 A1AGZ 9 A1AGZ C13 C10 C 0 1 N N N N N N -0.740 -12.609 -1.946 2.039 -1.108 2.880 C13 A1AGZ 10 A1AGZ C14 C11 C 0 1 N N N N N N -1.216 -12.258 -4.371 2.171 -3.373 1.835 C14 A1AGZ 11 A1AGZ C15 C12 C 0 1 N N N N N N 3.551 -12.141 -2.807 1.977 0.146 -0.695 C15 A1AGZ 12 A1AGZ C17 C13 C 0 1 N N S N N N 5.368 -13.745 -2.393 4.317 0.544 -1.247 C17 A1AGZ 13 A1AGZ C18 C14 C 0 1 N N N N N N 6.218 -13.672 -1.125 5.515 1.123 -0.492 C18 A1AGZ 14 A1AGZ C19 C15 C 0 1 N N S N N N 6.529 -12.228 -0.733 5.111 2.441 0.172 C19 A1AGZ 15 A1AGZ C20 C16 C 0 1 N N N N N N 7.330 -12.102 0.550 4.088 2.194 1.260 C20 A1AGZ 16 A1AGZ C22 C17 C 0 1 N N N N N N 8.116 -10.440 -0.874 6.113 2.519 2.349 C22 A1AGZ 17 A1AGZ C23 C18 C 0 1 N N N N N N 7.355 -11.435 -1.739 6.314 3.063 0.918 C23 A1AGZ 18 A1AGZ C25 C19 C 0 1 N N S N N N 5.260 -15.172 -2.892 4.753 -0.707 -2.013 C25 A1AGZ 19 A1AGZ C30 C20 C 0 1 N N N N N N 1.664 -5.702 -0.902 -5.603 -0.541 -0.095 C30 A1AGZ 20 A1AGZ C31 C21 C 0 1 N N N N N N 1.403 -4.394 -1.637 -6.989 -0.640 0.545 C31 A1AGZ 21 A1AGZ C32 C22 C 0 1 N N N N N N 0.065 -4.424 -2.359 -7.130 -1.990 1.250 C32 A1AGZ 22 A1AGZ C33 C23 C 0 1 N N N N N N -0.197 -3.116 -3.102 -8.516 -2.089 1.891 C33 A1AGZ 23 A1AGZ C34 C24 C 0 1 N N N N N N 0.922 -2.813 -4.079 -9.589 -1.964 0.807 C34 A1AGZ 24 A1AGZ C35 C25 C 0 1 N N N N N N 2.258 -2.776 -3.366 -9.448 -0.614 0.103 C35 A1AGZ 25 A1AGZ C36 C26 C 0 1 N N N N N N 2.520 -4.082 -2.620 -8.062 -0.515 -0.538 C36 A1AGZ 26 A1AGZ N09 N1 N 0 1 N N N N N N 2.043 -10.264 -2.223 -0.411 0.273 -0.281 N09 A1AGZ 27 A1AGZ N16 N2 N 0 1 N N N N N N 4.038 -13.192 -2.141 3.263 0.190 -0.293 N16 A1AGZ 28 A1AGZ N21 N3 N 0 1 N N N N N N 8.275 -11.183 0.371 4.675 2.249 2.467 N21 A1AGZ 29 A1AGZ N29 N4 N 0 1 N N N N N N 2.858 -5.670 -0.071 -5.423 0.796 -0.667 N29 A1AGZ 30 A1AGZ O01 O1 O 0 1 N N N N N N 2.302 -3.975 1.345 -6.228 0.377 -2.746 O01 A1AGZ 31 A1AGZ O07 O2 O 0 1 N N N N N N 2.806 -8.306 -1.548 -2.584 1.088 -0.044 O07 A1AGZ 32 A1AGZ O24 O3 O 0 1 N N N N N N 7.116 -12.729 1.604 2.910 1.979 1.069 O24 A1AGZ 33 A1AGZ O26 O4 O 0 1 N N N N N N 6.559 -15.663 -3.158 5.859 -0.386 -2.859 O26 A1AGZ 34 A1AGZ O27 O5 O 0 1 N N N N N N 4.199 -11.537 -3.657 1.703 0.290 -1.867 O27 A1AGZ 35 A1AGZ O28 O6 O 0 1 N N N N N N 3.587 -10.194 -0.562 -1.301 0.660 1.716 O28 A1AGZ 36 A1AGZ H1 H1 H 0 1 N N N N N N 1.850 -12.211 -1.518 1.059 0.535 1.192 H1 A1AGZ 37 A1AGZ H2 H2 H 0 1 N N N N N N 4.747 -5.190 2.196 -4.913 2.704 -3.140 H2 A1AGZ 38 A1AGZ H3 H3 H 0 1 N N N N N N 5.075 -3.843 1.054 -6.321 3.192 -2.148 H3 A1AGZ 39 A1AGZ H4 H4 H 0 1 N N N N N N 5.958 -6.413 0.560 -3.423 2.841 -1.314 H4 A1AGZ 40 A1AGZ H5 H5 H 0 1 N N N N N N 5.459 -5.316 -0.772 -4.652 3.985 -0.682 H5 A1AGZ 41 A1AGZ H6 H6 H 0 1 N N N N N N 3.774 -7.376 0.743 -5.615 2.371 0.724 H6 A1AGZ 42 A1AGZ H7 H7 H 0 1 N N N N N N 4.875 -8.232 -1.276 -3.283 2.341 1.471 H7 A1AGZ 43 A1AGZ H8 H8 H 0 1 N N N N N N 4.174 -6.890 -2.244 -3.904 0.673 1.517 H8 A1AGZ 44 A1AGZ H9 H9 H 0 1 N N N N N N 1.269 -13.202 -3.698 -0.030 -1.761 1.312 H9 A1AGZ 45 A1AGZ H10 H10 H 0 1 N N N N N N 1.390 -11.575 -4.451 0.859 -2.183 -0.172 H10 A1AGZ 46 A1AGZ H11 H11 H 0 1 N N N N N N -0.452 -10.783 -3.021 2.999 -1.565 1.007 H11 A1AGZ 47 A1AGZ H12 H12 H 0 1 N N N N N N -0.089 -12.313 -1.110 1.161 -1.431 3.440 H12 A1AGZ 48 A1AGZ H13 H13 H 0 1 N N N N N N -1.784 -12.364 -1.702 2.937 -1.310 3.463 H13 A1AGZ 49 A1AGZ H14 H14 H 0 1 N N N N N N -0.648 -13.692 -2.117 1.969 -0.038 2.680 H14 A1AGZ 50 A1AGZ H15 H15 H 0 1 N N N N N N -2.268 -12.062 -4.114 2.221 -3.916 0.891 H15 A1AGZ 51 A1AGZ H16 H16 H 0 1 N N N N N N -0.940 -11.670 -5.259 3.058 -3.595 2.428 H16 A1AGZ 52 A1AGZ H17 H17 H 0 1 N N N N N N -1.084 -13.329 -4.585 1.280 -3.678 2.383 H17 A1AGZ 53 A1AGZ H18 H18 H 0 1 N N N N N N 5.863 -13.145 -3.171 3.937 1.286 -1.949 H18 A1AGZ 54 A1AGZ H19 H19 H 0 1 N N N N N N 5.671 -14.155 -0.302 5.839 0.416 0.272 H19 A1AGZ 55 A1AGZ H20 H20 H 0 1 N N N N N N 7.164 -14.205 -1.299 6.332 1.304 -1.190 H20 A1AGZ 56 A1AGZ H21 H21 H 0 1 N N N N N N 5.573 -11.703 -0.590 4.718 3.136 -0.570 H21 A1AGZ 57 A1AGZ H22 H22 H 0 1 N N N N N N 9.091 -10.188 -1.317 6.682 1.600 2.487 H22 A1AGZ 58 A1AGZ H23 H23 H 0 1 N N N N N N 7.535 -9.519 -0.719 6.418 3.265 3.084 H23 A1AGZ 59 A1AGZ H24 H24 H 0 1 N N N N N N 6.705 -10.914 -2.457 7.257 2.714 0.496 H24 A1AGZ 60 A1AGZ H25 H25 H 0 1 N N N N N N 8.049 -12.093 -2.283 6.262 4.152 0.903 H25 A1AGZ 61 A1AGZ S1 S1 S 0 1 N Y N N N N 4.772 -15.785 -2.164 5.246 -1.995 -0.835 S1 A1AGZ 62 A1AGZ H27 H27 H 0 1 N N N N N N 4.723 -15.123 -3.851 3.923 -1.068 -2.620 H27 A1AGZ 63 A1AGZ H28 H28 H 0 1 N N N N N N 0.798 -5.920 -0.260 -4.839 -0.718 0.662 H28 A1AGZ 64 A1AGZ H29 H29 H 0 1 N N N N N N 1.779 -6.503 -1.647 -5.513 -1.288 -0.884 H29 A1AGZ 65 A1AGZ H30 H30 H 0 1 N N N N N N 1.370 -3.586 -0.892 -7.111 0.164 1.272 H30 A1AGZ 66 A1AGZ H31 H31 H 0 1 N N N N N N -0.736 -4.583 -1.622 -7.008 -2.794 0.523 H31 A1AGZ 67 A1AGZ H32 H32 H 0 1 N N N N N N 0.067 -5.252 -3.083 -6.365 -2.079 2.022 H32 A1AGZ 68 A1AGZ H33 H33 H 0 1 N N N N N N -0.269 -2.296 -2.372 -8.616 -3.051 2.393 H33 A1AGZ 69 A1AGZ H34 H34 H 0 1 N N N N N N -1.144 -3.200 -3.655 -8.638 -1.286 2.617 H34 A1AGZ 70 A1AGZ H35 H35 H 0 1 N N N N N N 0.736 -1.836 -4.549 -9.466 -2.768 0.081 H35 A1AGZ 71 A1AGZ H36 H36 H 0 1 N N N N N N 0.947 -3.594 -4.853 -10.576 -2.035 1.264 H36 A1AGZ 72 A1AGZ H37 H37 H 0 1 N N N N N N 3.056 -2.619 -4.107 -10.212 -0.525 -0.669 H37 A1AGZ 73 A1AGZ H38 H38 H 0 1 N N N N N N 2.258 -1.945 -2.646 -9.570 0.190 0.829 H38 A1AGZ 74 A1AGZ H39 H39 H 0 1 N N N N N N 2.594 -4.902 -3.349 -7.961 0.447 -1.040 H39 A1AGZ 75 A1AGZ H40 H40 H 0 1 N N N N N N 3.468 -3.995 -2.069 -7.939 -1.318 -1.265 H40 A1AGZ 76 A1AGZ H41 H41 H 0 1 N N N N N N 1.343 -9.733 -2.700 -0.533 0.220 -1.242 H41 A1AGZ 77 A1AGZ H42 H42 H 0 1 N N N N N N 3.468 -13.619 -1.439 3.490 -0.012 0.628 H42 A1AGZ 78 A1AGZ H43 H43 H 0 1 N N N N N N 9.016 -11.019 1.022 4.209 2.126 3.309 H43 A1AGZ 79 A1AGZ H44 H44 H 0 1 N N N N N N 6.502 -16.558 -3.472 6.635 -0.057 -2.384 H44 A1AGZ 80 A1AGZ O1 O7 O 0 1 N Y N N N N ? ? ? 6.377 -1.577 -0.083 O1 A1AGZ 81 A1AGZ O3 O8 O 0 1 N Y N N N N ? ? ? 4.105 -2.549 -0.195 O3 A1AGZ 82 A1AGZ O2 O9 O 0 1 N Y N N N N ? ? ? 5.773 -3.125 -1.707 O2 A1AGZ 83 A1AGZ H26 H26 H 0 1 N N N N N N ? ? ? 6.078 -3.897 -1.210 H26 A1AGZ 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AGZ C14 C12 SING N N 1 A1AGZ C34 C35 SING N N 2 A1AGZ C34 C33 SING N N 3 A1AGZ O27 C15 DOUB N N 4 A1AGZ C11 C12 SING N N 5 A1AGZ C11 C10 SING N N 6 A1AGZ C35 C36 SING N N 7 A1AGZ C12 C13 SING N N 8 A1AGZ O26 C25 SING N N 9 A1AGZ C33 C32 SING N N 10 A1AGZ C25 C17 SING N N 11 A1AGZ C15 C10 SING N N 12 A1AGZ C15 N16 SING N N 13 A1AGZ C36 C31 SING N N 14 A1AGZ C10 N09 SING N N 15 A1AGZ C17 N16 SING N N 16 A1AGZ C17 C18 SING N N 17 A1AGZ C32 C31 SING N N 18 A1AGZ N09 C08 SING N N 19 A1AGZ C23 C22 SING N N 20 A1AGZ C23 C19 SING N N 21 A1AGZ C31 C30 SING N N 22 A1AGZ O07 C08 SING N N 23 A1AGZ O07 C06 SING N N 24 A1AGZ C08 O28 DOUB N N 25 A1AGZ C06 C05 SING N N 26 A1AGZ C18 C19 SING N N 27 A1AGZ C30 N29 SING N N 28 A1AGZ C22 N21 SING N N 29 A1AGZ C19 C20 SING N N 30 A1AGZ C05 N29 SING N N 31 A1AGZ C05 C04 SING N N 32 A1AGZ N29 C02 SING N N 33 A1AGZ C04 C03 SING N N 34 A1AGZ N21 C20 SING N N 35 A1AGZ C20 O24 DOUB N N 36 A1AGZ C02 C03 SING N N 37 A1AGZ C02 O01 DOUB N N 38 A1AGZ C10 H1 SING N N 39 A1AGZ C03 H2 SING N N 40 A1AGZ C03 H3 SING N N 41 A1AGZ C04 H4 SING N N 42 A1AGZ C04 H5 SING N N 43 A1AGZ C05 H6 SING N N 44 A1AGZ C06 H7 SING N N 45 A1AGZ C06 H8 SING N N 46 A1AGZ C11 H9 SING N N 47 A1AGZ C11 H10 SING N N 48 A1AGZ C12 H11 SING N N 49 A1AGZ C13 H12 SING N N 50 A1AGZ C13 H13 SING N N 51 A1AGZ C13 H14 SING N N 52 A1AGZ C14 H15 SING N N 53 A1AGZ C14 H16 SING N N 54 A1AGZ C14 H17 SING N N 55 A1AGZ C17 H18 SING N N 56 A1AGZ C18 H19 SING N N 57 A1AGZ C18 H20 SING N N 58 A1AGZ C19 H21 SING N N 59 A1AGZ C22 H22 SING N N 60 A1AGZ C22 H23 SING N N 61 A1AGZ C23 H24 SING N N 62 A1AGZ C23 H25 SING N N 63 A1AGZ C25 S1 SING N N 64 A1AGZ C25 H27 SING N N 65 A1AGZ C30 H28 SING N N 66 A1AGZ C30 H29 SING N N 67 A1AGZ C31 H30 SING N N 68 A1AGZ C32 H31 SING N N 69 A1AGZ C32 H32 SING N N 70 A1AGZ C33 H33 SING N N 71 A1AGZ C33 H34 SING N N 72 A1AGZ C34 H35 SING N N 73 A1AGZ C34 H36 SING N N 74 A1AGZ C35 H37 SING N N 75 A1AGZ C35 H38 SING N N 76 A1AGZ C36 H39 SING N N 77 A1AGZ C36 H40 SING N N 78 A1AGZ N09 H41 SING N N 79 A1AGZ N16 H42 SING N N 80 A1AGZ N21 H43 SING N N 81 A1AGZ O26 H44 SING N N 82 A1AGZ S1 O1 DOUB N N 83 A1AGZ S1 O3 DOUB N N 84 A1AGZ S1 O2 SING N N 85 A1AGZ O2 H26 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor A1AGZ SMILES ACDLabs 12.01 "O=C1NCCC1CC(NC(=O)C(CC(C)C)NC(=O)OCC1CCC(=O)N1CC1CCCCC1)C(O)S(=O)(=O)O" A1AGZ InChI InChI 1.06 "InChI=1S/C26H44N4O9S/c1-16(2)12-20(24(33)28-21(25(34)40(36,37)38)13-18-10-11-27-23(18)32)29-26(35)39-15-19-8-9-22(31)30(19)14-17-6-4-3-5-7-17/h16-21,25,34H,3-15H2,1-2H3,(H,27,32)(H,28,33)(H,29,35)(H,36,37,38)/t18-,19+,20-,21-,25-/m0/s1" A1AGZ InChIKey InChI 1.06 UDXIYOCRUKPXES-YKUDZUIHSA-N A1AGZ SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1CCC(=O)N1CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O" A1AGZ SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1CCC(=O)N1CC2CCCCC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O" A1AGZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2CCC(=O)N2CC3CCCCC3" A1AGZ SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CCC(=O)N2CC3CCCCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier A1AGZ "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-{[N-({[(2R)-1-(cyclohexylmethyl)-5-oxopyrrolidin-2-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" A1AGZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{R})-1-(cyclohexylmethyl)-5-oxidanylidene-pyrrolidin-2-yl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site A1AGZ "Create component" 2024-02-29 RCSB A1AGZ "Initial release" 2024-07-10 RCSB A1AGZ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id A1AGZ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #