data_A1AH3
#
_chem_comp.id A1AH3
_chem_comp.name "{(2R,3S,4R,5R)-5-[(8S)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H23 N5 O14 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2024-03-12
_chem_comp.pdbx_modified_date 2024-04-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 583.337
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code A1AH3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 9AZX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A1AH3 N1 N1 N 0 1 N N N N N N -22.160 11.540 -17.154 3.773 -0.736 3.369 N1 A1AH3 1
A1AH3 N3 N2 N 0 1 Y N N N N N -18.870 10.774 -17.927 3.826 -2.543 -0.065 N3 A1AH3 2
A1AH3 C4 C1 C 0 1 N N N N N N -21.500 10.911 -16.470 4.056 -0.257 2.379 C4 A1AH3 3
A1AH3 C5 C2 C 0 1 N N R N N N -20.189 10.759 -13.465 2.717 1.890 0.920 C5 A1AH3 4
A1AH3 C6 C3 C 0 1 N N N N N N -19.295 9.969 -12.521 1.794 2.607 -0.067 C6 A1AH3 5
A1AH3 C7 C4 C 0 1 N N N N N N -16.925 5.906 -8.425 -5.593 0.031 -0.818 C7 A1AH3 6
A1AH3 C8 C5 C 0 1 N N R N N N -16.942 4.400 -8.537 -6.049 -1.097 0.109 C8 A1AH3 7
A1AH3 C10 C6 C 0 1 N N R N N N -15.061 3.435 -9.630 -8.055 -1.679 1.363 C10 A1AH3 8
A1AH3 C13 C7 C 0 1 Y N N N N N -20.038 7.614 -16.695 6.608 -0.275 -0.049 C13 A1AH3 9
A1AH3 C15 C8 C 0 1 Y N N N N N -18.691 8.391 -18.315 6.082 -2.302 -0.816 C15 A1AH3 10
A1AH3 C17 C9 C 0 1 Y N N N N N -17.818 8.672 -19.399 5.963 -3.590 -1.387 C17 A1AH3 11
A1AH3 C1 C10 C 0 1 N N S N N N -21.657 10.343 -13.495 3.963 2.752 1.216 C1 A1AH3 12
A1AH3 C11 C11 C 0 1 N N R N N N -16.310 3.147 -10.447 -6.782 -1.574 2.232 C11 A1AH3 13
A1AH3 C12 C12 C 0 1 Y N N N N N -20.011 9.029 -16.629 5.327 -0.552 0.311 C12 A1AH3 14
A1AH3 C14 C13 C 0 1 Y N N N N N -19.209 7.240 -17.755 7.100 -1.370 -0.762 C14 A1AH3 15
A1AH3 C16 C14 C 0 1 Y N N N N N -18.049 10.947 -18.928 3.782 -3.726 -0.614 C16 A1AH3 16
A1AH3 C2 C15 C 0 1 N N R N N N -21.613 9.292 -14.606 5.111 1.725 1.334 C2 A1AH3 17
A1AH3 C3 C16 C 0 1 N N R N N N -20.710 9.956 -15.669 4.423 0.363 1.095 C3 A1AH3 18
A1AH3 C9 C17 C 0 1 N N S N N N -15.617 3.699 -8.232 -7.562 -1.357 -0.065 C9 A1AH3 19
A1AH3 N2 N3 N 0 1 Y N N N N N -19.193 9.467 -17.625 4.995 -1.774 -0.146 N2 A1AH3 20
A1AH3 N4 N4 N 0 1 Y N N N N N -17.495 9.964 -19.670 4.822 -4.248 -1.263 N4 A1AH3 21
A1AH3 N5 N5 N 0 1 N N N N N N -17.278 7.699 -20.143 7.024 -4.155 -2.065 N5 A1AH3 22
A1AH3 O1 O1 O 0 1 N N N N N N -22.511 11.428 -13.850 3.800 3.464 2.445 O1 A1AH3 23
A1AH3 O10 O2 O 0 1 N N N N N N -19.938 8.189 -8.855 -3.462 0.938 -3.140 O10 A1AH3 24
A1AH3 O11 O3 O 0 1 N N N N N N -17.510 8.838 -8.283 -3.911 2.619 -1.311 O11 A1AH3 25
A1AH3 O12 O4 O 0 1 N N N N N N -17.764 7.190 -12.917 -0.050 2.312 -2.764 O12 A1AH3 26
A1AH3 O13 O5 O 0 1 N N N N N N -19.787 6.306 -11.622 -1.048 3.636 -0.861 O13 A1AH3 27
A1AH3 O14 O6 O 0 1 N N N N N N -22.890 8.944 -15.127 5.692 1.770 2.639 O14 A1AH3 28
A1AH3 O2 O7 O 0 1 N N N N N N -19.721 10.569 -14.845 3.235 0.676 0.333 O2 A1AH3 29
A1AH3 O3 O8 O 0 1 N N N N N N -19.808 8.627 -12.344 0.611 1.830 -0.265 O3 A1AH3 30
A1AH3 O4 O9 O 0 1 N N N N N N -18.117 7.939 -10.579 -1.803 1.242 -1.123 O4 A1AH3 31
A1AH3 O5 O10 O 0 1 N N N N N N -18.277 6.409 -8.600 -4.174 0.177 -0.727 O5 A1AH3 32
A1AH3 O6 O11 O 0 1 N N N N N N -17.314 4.008 -9.880 -5.900 -0.703 1.491 O6 A1AH3 33
A1AH3 O7 O12 O 0 1 N N N N N N -16.177 3.425 -11.809 -7.094 -1.001 3.504 O7 A1AH3 34
A1AH3 O8 O13 O 0 1 N N N N N N -14.089 2.391 -9.695 -8.594 -3.001 1.422 O8 A1AH3 35
A1AH3 O9 O14 O 0 1 N N N N N N -15.832 2.503 -7.486 -7.781 -2.472 -0.933 O9 A1AH3 36
A1AH3 P1 P1 P 0 1 N N N N N N -18.846 7.413 -11.901 -0.583 2.285 -1.245 P1 A1AH3 37
A1AH3 P2 P2 P 0 1 N N N N N N -18.477 7.952 -8.980 -3.350 1.274 -1.570 P2 A1AH3 38
A1AH3 H4 H1 H 0 1 N N N N N N -20.129 11.825 -13.201 2.182 1.666 1.844 H4 A1AH3 39
A1AH3 H5 H2 H 0 1 N N N N N N -18.280 9.916 -12.942 1.524 3.585 0.333 H5 A1AH3 40
A1AH3 H6 H3 H 0 1 N N N N N N -19.261 10.476 -11.545 2.309 2.734 -1.019 H6 A1AH3 41
A1AH3 H7 H4 H 0 1 N N N N N N -16.272 6.326 -9.204 -5.868 -0.210 -1.845 H7 A1AH3 42
A1AH3 H8 H5 H 0 1 N N N N N N -16.548 6.198 -7.433 -6.074 0.963 -0.521 H8 A1AH3 43
A1AH3 H9 H6 H 0 1 N N N N N N -17.695 4.015 -7.834 -5.482 -2.006 -0.091 H9 A1AH3 44
A1AH3 H11 H7 H 0 1 N N N N N N -14.617 4.370 -10.002 -8.799 -0.949 1.686 H11 A1AH3 45
A1AH3 H16 H8 H 0 1 N N N N N N -20.594 6.951 -16.049 7.150 0.631 0.176 H16 A1AH3 46
A1AH3 H2 H9 H 0 1 N N N N N N -21.948 9.882 -12.539 4.153 3.444 0.395 H2 A1AH3 47
A1AH3 H12 H10 H 0 1 N N N N N N -16.594 2.095 -10.297 -6.328 -2.556 2.359 H12 A1AH3 48
A1AH3 H17 H11 H 0 1 N N N N N N -19.009 6.230 -18.079 8.087 -1.470 -1.188 H17 A1AH3 49
A1AH3 H18 H12 H 0 1 N N N N N N -17.791 11.964 -19.184 2.872 -4.302 -0.540 H18 A1AH3 50
A1AH3 H3 H13 H 0 1 N N N N N N -21.102 8.396 -14.224 5.868 1.909 0.571 H3 A1AH3 51
A1AH3 H10 H14 H 0 1 N N N N N N -14.950 4.388 -7.693 -8.061 -0.468 -0.451 H10 A1AH3 52
A1AH3 H19 H15 H 0 1 N N N N N N -16.677 8.101 -20.833 7.859 -3.667 -2.152 H19 A1AH3 53
A1AH3 H20 H16 H 0 1 N N N N N N -16.749 7.086 -19.557 6.937 -5.039 -2.454 H20 A1AH3 54
A1AH3 H1 H17 H 0 1 N N N N N N -22.522 12.066 -13.146 4.577 3.975 2.709 H1 A1AH3 55
A1AH3 H22 H18 H 0 1 N N N N N N -20.090 8.943 -8.297 -3.112 0.070 -3.383 H22 A1AH3 56
A1AH3 H23 H19 H 0 1 N N N N N N -17.834 6.310 -13.267 0.272 1.458 -3.083 H23 A1AH3 57
A1AH3 H21 H20 H 0 1 N N N N N N -22.787 8.291 -15.809 6.086 2.624 2.864 H21 A1AH3 58
A1AH3 H13 H21 H 0 1 N N N N N N -16.991 3.223 -12.255 -6.331 -0.911 4.092 H13 A1AH3 59
A1AH3 H14 H22 H 0 1 N N N N N N -13.793 2.288 -10.592 -8.864 -3.276 2.309 H14 A1AH3 60
A1AH3 H15 H23 H 0 1 N N N N N N -14.997 2.086 -7.309 -8.715 -2.680 -1.077 H15 A1AH3 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A1AH3 O1 C1 SING N N 1
A1AH3 C1 C2 SING N N 2
A1AH3 C2 C3 SING N N 3
A1AH3 C3 C4 SING N N 4
A1AH3 C4 N1 TRIP N N 5
A1AH3 C3 O2 SING N N 6
A1AH3 O2 C5 SING N N 7
A1AH3 C5 C6 SING N N 8
A1AH3 C6 O3 SING N N 9
A1AH3 O3 P1 SING N N 10
A1AH3 P1 O4 SING N N 11
A1AH3 O4 P2 SING N N 12
A1AH3 P2 O5 SING N N 13
A1AH3 O5 C7 SING N N 14
A1AH3 C7 C8 SING N N 15
A1AH3 C8 C9 SING N N 16
A1AH3 C9 C10 SING N N 17
A1AH3 C10 C11 SING N N 18
A1AH3 C11 O6 SING N N 19
A1AH3 C11 O7 SING N N 20
A1AH3 C10 O8 SING N N 21
A1AH3 C9 O9 SING N N 22
A1AH3 P2 O10 SING N N 23
A1AH3 P2 O11 DOUB N N 24
A1AH3 P1 O12 SING N N 25
A1AH3 P1 O13 DOUB N N 26
A1AH3 C3 C12 SING N N 27
A1AH3 C12 C13 DOUB Y N 28
A1AH3 C13 C14 SING Y N 29
A1AH3 C14 C15 DOUB Y N 30
A1AH3 C15 N2 SING Y N 31
A1AH3 N2 N3 SING Y N 32
A1AH3 N3 C16 DOUB Y N 33
A1AH3 C16 N4 SING Y N 34
A1AH3 N4 C17 DOUB Y N 35
A1AH3 C17 N5 SING N N 36
A1AH3 C2 O14 SING N N 37
A1AH3 C1 C5 SING N N 38
A1AH3 C8 O6 SING N N 39
A1AH3 C12 N2 SING Y N 40
A1AH3 C15 C17 SING Y N 41
A1AH3 C5 H4 SING N N 42
A1AH3 C6 H5 SING N N 43
A1AH3 C6 H6 SING N N 44
A1AH3 C7 H7 SING N N 45
A1AH3 C7 H8 SING N N 46
A1AH3 C8 H9 SING N N 47
A1AH3 C10 H11 SING N N 48
A1AH3 C13 H16 SING N N 49
A1AH3 C1 H2 SING N N 50
A1AH3 C11 H12 SING N N 51
A1AH3 C14 H17 SING N N 52
A1AH3 C16 H18 SING N N 53
A1AH3 C2 H3 SING N N 54
A1AH3 C9 H10 SING N N 55
A1AH3 N5 H19 SING N N 56
A1AH3 N5 H20 SING N N 57
A1AH3 O1 H1 SING N N 58
A1AH3 O10 H22 SING N N 59
A1AH3 O12 H23 SING N N 60
A1AH3 O14 H21 SING N N 61
A1AH3 O7 H13 SING N N 62
A1AH3 O8 H14 SING N N 63
A1AH3 O9 H15 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A1AH3 SMILES ACDLabs 12.01 "OC1C(O)C(O)OC1COP(=O)(O)OP(=O)(O)OCC1OC(C#N)(C(O)C1O)c1ccc2c(N)ncnn21"
A1AH3 InChI InChI 1.06 "InChI=1S/C17H23N5O14P2/c18-5-17(10-2-1-7-15(19)20-6-21-22(7)10)14(26)12(24)9(35-17)4-33-38(30,31)36-37(28,29)32-3-8-11(23)13(25)16(27)34-8/h1-2,6,8-9,11-14,16,23-27H,3-4H2,(H,28,29)(H,30,31)(H2,19,20,21)/t8-,9-,11-,12-,13-,14-,16-,17+/m1/s1"
A1AH3 InChIKey InChI 1.06 OXUMWBCVIOHGKL-AFOAYCNSSA-N
A1AH3 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnn2c1ccc2[C@@]3(O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@@H](O)[C@H](O)[C@@H]4O)[C@@H](O)[C@H]3O)C#N"
A1AH3 SMILES CACTVS 3.385 "Nc1ncnn2c1ccc2[C]3(O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH](O)[CH](O)[CH]4O)[CH](O)[CH]3O)C#N"
A1AH3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)[C@]3([C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)O)O)O)O)O)C#N"
A1AH3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)C3(C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)O)O)O)O)O)C#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A1AH3 "SYSTEMATIC NAME" ACDLabs 12.01 "{(2R,3S,4R,5R)-5-[(8S)-4-aminopyrrolo[2,1-f][1,2,4]triazin-7-yl]-5-cyano-3,4-dihydroxyoxolan-2-yl}methyl [(2R,3S,4R,5R)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen diphosphate (non-preferred name)"
A1AH3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-cyano-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4,5-tris(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A1AH3 "Create component" 2024-03-12 RCSB
A1AH3 "Initial release" 2024-05-01 RCSB
#